Mercurial > repos > iuc > decontaminator
comparison tool-data/decontaminator.loc.sample @ 0:b856d3d95413 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
| author | iuc |
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| date | Mon, 09 Jan 2023 13:27:09 +0000 |
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| -1:000000000000 | 0:b856d3d95413 |
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| 1 #This is a sample file distributed with Galaxy that enables tools | |
| 2 #to use a directory of decontaminator hdf5 model files. You will need | |
| 3 #to create these data files and then create a decontaminator.loc file | |
| 4 #similar to this one (store it in this directory) that points to | |
| 5 #the directories in which those files are stored. The decontaminator.loc | |
| 6 #file has this format (white space characters are TAB characters): | |
| 7 # | |
| 8 # <value> <name> <path> | |
| 9 # | |
| 10 #So, for example, if you had fungi hdf5 model files stored in | |
| 11 # | |
| 12 # /tool-data/weights/fungi/, | |
| 13 # | |
| 14 #then the decontaminator.loc entry would look like this: | |
| 15 # | |
| 16 #fungi fungi ${__HERE__}/weights/fungi | |
| 17 # | |
| 18 #and your /tool-data/weights/fungi/ directory | |
| 19 #would contain model_500.h5 and model_1000.h5 files. | |
| 20 # | |
| 21 #Your decontaminator.loc file should include an entry per line for | |
| 22 #each index set you have stored. The file in the path does actually | |
| 23 #exist, but it should never be directly used. Instead, the name serves | |
| 24 #as a prefix for the index file. For example: | |
| 25 # | |
| 26 #fungi fungi ${__HERE__}/weights/fungi | |
| 27 #phage phage ${__HERE__}/weights/phage |