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comparison deepvariant.xml @ 4:63b68fe4af85 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit d936ef547007b54a536787384cae90e98af2aede
author iuc
date Tue, 05 Mar 2024 08:10:46 +0000
parents 918c8b94c8d8
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3:918c8b94c8d8 4:63b68fe4af85
54 </when> 54 </when>
55 <when value="history"> 55 <when value="history">
56 <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" /> 56 <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" />
57 </when> 57 </when>
58 </conditional> 58 </conditional>
59 <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" /> 59 <param argument="--reads" type="data" format="bam" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" />
60 <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling"> 60 <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling">
61 <option value="WGS">WGS: Illumina whole genome sequencing</option> 61 <option value="WGS">WGS: Illumina whole genome sequencing</option>
62 <option value="WES">WES: Illumina whole exome sequencing</option> 62 <option value="WES">WES: Illumina whole exome sequencing</option>
63 <option value="PACBIO">PacBio HiFi</option> 63 <option value="PACBIO">PacBio HiFi</option>
64 <option value="HYBRID_PACBIO_ILLUMINA">Hybrid PacBio HiFi-Illumina</option> 64 <option value="HYBRID_PACBIO_ILLUMINA">Hybrid PacBio HiFi-Illumina</option>