Mercurial > repos > iuc > deepvariant
diff deepvariant.xml @ 3:918c8b94c8d8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit 95f18cd38ca051a3f5cfe456c1a8ef5fa21730d1
| author | iuc |
|---|---|
| date | Mon, 10 Apr 2023 11:11:16 +0000 |
| parents | 98fe794d2ec0 |
| children | 63b68fe4af85 |
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--- a/deepvariant.xml Sun Sep 04 07:54:30 2022 +0000 +++ b/deepvariant.xml Mon Apr 10 11:11:16 2023 +0000 @@ -62,6 +62,7 @@ <option value="WES">WES: Illumina whole exome sequencing</option> <option value="PACBIO">PacBio HiFi</option> <option value="HYBRID_PACBIO_ILLUMINA">Hybrid PacBio HiFi-Illumina</option> + <option value="ONT_R104">ONT R10.4 simplex and duplex data</option> </param> <conditional name="regions_conditional"> <param name="regions_option" type="select" label="Select specific regions to process" help="Restrict the analysis to specific regions. A space-separated list of chromosome regions to process. Individual elements can be region literals, such as chr20:10-20 or paths to BED files."> @@ -110,12 +111,12 @@ <output name="vcf_file" file="output.vcf" ftype="vcf"> <assert_contents> <has_text text="##fileformat=VCFv4.2"/> - <has_size value="2473"/> + <has_size value="2478" delta="10"/> </assert_contents> </output> <output name="html_report" file="report.html" ftype="html"> <assert_contents> - <has_size value="19287" delta="100"/> + <has_size value="23176" delta="100"/> </assert_contents> </output> </test> @@ -134,12 +135,12 @@ <output name="vcf_file" ftype="vcf"> <assert_contents> <has_text text="##fileformat=VCFv4.2"/> - <has_size value="1842"/> + <has_size value="1843" delta="10"/> </assert_contents> </output> <output name="html_report" ftype="html"> <assert_contents> - <has_size value="14880" delta="100"/> + <has_size value="18894" delta="100"/> </assert_contents> </output> </test> @@ -158,12 +159,12 @@ <output name="vcf_file" ftype="vcf"> <assert_contents> <has_text text="##fileformat=VCFv4.2"/> - <has_size value="1842"/> + <has_size value="1843" delta="10"/> </assert_contents> </output> <output name="html_report" ftype="html"> <assert_contents> - <has_size value="14880" delta="100"/> + <has_size value="18894" delta="100"/> </assert_contents> </output> </test> @@ -183,18 +184,18 @@ <output name="vcf_file" ftype="vcf"> <assert_contents> <has_text text="##fileformat=VCFv4.2"/> - <has_size value="1842"/> + <has_size value="1843" delta="10"/> </assert_contents> </output> <output name="gvcf_file" file="output.g.vcf" ftype="vcf"> <assert_contents> <has_text text="##fileformat=VCFv4.2"/> - <has_size value="3191"/> + <has_size value="3192" delta="10" /> </assert_contents> </output> <output name="html_report" ftype="html"> <assert_contents> - <has_size value="14880" delta="100"/> + <has_size value="18894" delta="100"/> </assert_contents> </output> </test> @@ -212,12 +213,12 @@ <output name="vcf_file" ftype="vcf"> <assert_contents> <has_text text="##fileformat=VCFv4.2"/> - <has_size value="2473"/> + <has_size value="2478"/> </assert_contents> </output> <output name="html_report" ftype="html"> <assert_contents> - <has_size value="19287" delta="100"/> + <has_size value="23176" delta="100"/> </assert_contents> </output> </test> @@ -235,12 +236,12 @@ <output name="vcf_file" ftype="vcf"> <assert_contents> <has_text text="##fileformat=VCFv4.2"/> - <has_size value="2473"/> + <has_size value="2478"/> </assert_contents> </output> <output name="html_report" ftype="html"> <assert_contents> - <has_size value="19287" delta="100"/> + <has_size value="23176" delta="100"/> </assert_contents> </output> </test>