Mercurial > repos > iuc > deepvariant

diff deepvariant.xml @ 2:98fe794d2ec0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit 4255237ed7a51299e25bd7de7ad52ac5d419a56c
author iuc
date Sun, 04 Sep 2022 07:54:30 +0000
parents b778a18bd878
children 918c8b94c8d8
line wrap: on
line diff
--- a/deepvariant.xml	Fri Oct 01 07:46:42 2021 +0000
+++ b/deepvariant.xml	Sun Sep 04 07:54:30 2022 +0000
@@ -134,12 +134,12 @@
             <output name="vcf_file" ftype="vcf">
                 <assert_contents>
                     <has_text text="##fileformat=VCFv4.2"/>
-                    <has_size value="1846"/>
+                    <has_size value="1842"/>
                 </assert_contents>
             </output>
             <output name="html_report" ftype="html">
                 <assert_contents>
-                    <has_size value="18864" delta="100"/>
+                    <has_size value="14880" delta="100"/>
                 </assert_contents>
             </output>
         </test>
@@ -153,17 +153,17 @@
             <param name="model_type" value="WGS"/>
             <conditional name="regions_conditional">
                 <param name="regions_option" value="bed"/>
-                <param name="bed_file" value="region.bed"/>
+                <param name="bed_file" value="region.bed" ftype="bed"/>
             </conditional>
             <output name="vcf_file" ftype="vcf">
                 <assert_contents>
                     <has_text text="##fileformat=VCFv4.2"/>
-                    <has_size value="1846"/>
+                    <has_size value="1842"/>
                 </assert_contents>
             </output>
             <output name="html_report" ftype="html">
                 <assert_contents>
-                    <has_size value="18864" delta="100"/>
+                    <has_size value="14880" delta="100"/>
                 </assert_contents>
             </output>
         </test>
@@ -183,18 +183,18 @@
             <output name="vcf_file" ftype="vcf">
                 <assert_contents>
                     <has_text text="##fileformat=VCFv4.2"/>
-                    <has_size value="1846"/>
+                    <has_size value="1842"/>
                 </assert_contents>
             </output>
             <output name="gvcf_file" file="output.g.vcf" ftype="vcf">
                 <assert_contents>
                     <has_text text="##fileformat=VCFv4.2"/>
-                    <has_size value="3195"/>
+                    <has_size value="3191"/>
                 </assert_contents>
             </output>
             <output name="html_report" ftype="html">
                 <assert_contents>
-                    <has_size value="18864" delta="100"/>
+                    <has_size value="14880" delta="100"/>
                 </assert_contents>
             </output>
         </test>