Mercurial > repos > iuc > deepvariant

diff deepvariant.xml @ 4:63b68fe4af85 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit d936ef547007b54a536787384cae90e98af2aede
author iuc
date Tue, 05 Mar 2024 08:10:46 +0000
parents 918c8b94c8d8
children
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--- a/deepvariant.xml	Mon Apr 10 11:11:16 2023 +0000
+++ b/deepvariant.xml	Tue Mar 05 08:10:46 2024 +0000
@@ -56,7 +56,7 @@
                 <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" />
             </when>
         </conditional>
-        <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" />
+        <param argument="--reads" type="data" format="bam" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" />
         <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling">
             <option value="WGS">WGS: Illumina whole genome sequencing</option>
             <option value="WES">WES: Illumina whole exome sequencing</option>