Mercurial > repos > iuc > deepvariant
changeset 1:b778a18bd878 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit ce3024e2098c50a93ea8a7fc120a40a570fd0c53"
| author | iuc |
|---|---|
| date | Fri, 01 Oct 2021 07:46:42 +0000 |
| parents | 7608209110d3 |
| children | 98fe794d2ec0 |
| files | deepvariant.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/deepvariant.xml Mon Sep 06 17:34:08 2021 +0000 +++ b/deepvariant.xml Fri Oct 01 07:46:42 2021 +0000 @@ -31,7 +31,7 @@ #else if $regions_conditional.regions_option == 'bed' --regions region.bed #end if - --call_variants_extra_args="use_openvino=true" ## Setting this will use OpenVINO on Intel CPUs, which empirically reduces call_variants runtime by 15%-25%. + ##--call_variants_extra_args="use_openvino=true" ## Setting this will use OpenVINO on Intel CPUs, which empirically reduces call_variants runtime by 15%-25%. --num_shards=\${GALAXY_SLOTS:-2} && gunzip './output.vcf.gz' #if $output_gvcf @@ -56,7 +56,7 @@ <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" /> </when> </conditional> - <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads files for child and one or two parents in BAM format. The reads must be aligned to the reference genome" /> + <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" /> <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling"> <option value="WGS">WGS: Illumina whole genome sequencing</option> <option value="WES">WES: Illumina whole exome sequencing</option>
--- a/macros.xml Mon Sep 06 17:34:08 2021 +0000 +++ b/macros.xml Fri Oct 01 07:46:42 2021 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.2.0</token> - <token name="@SUFFIX_VERSION@">0</token> + <token name="@SUFFIX_VERSION@">1</token> <xml name="edam_ontology"> <edam_topics> <edam_topic>topic_0199</edam_topic>