--- a/deg_annotate.xml	Fri Nov 23 01:59:47 2018 -0500
+++ b/deg_annotate.xml	Wed Jan 23 07:47:22 2019 -0500
@@ -1,5 +1,5 @@
-<tool id="deg_annotate" name="Annotate DESeq2/DEXSeq output tables" version="1.0">
-    <description>Append useful information from annotation files to DESeq2/DEXSeq outputs</description>
+<tool id="deg_annotate" name="Annotate DESeq2/DEXSeq output tables" version="1.1.0">
+    <description>Append annotation from GTF to differential expression tool outputs</description>
     <requirements>
         <requirement type="package" version="2.27.0">bedtools</requirement>
         <requirement type="package" version="0.6.4">bcbiogff</requirement>
@@ -21,10 +21,10 @@
                type="data"
                format="tabular"
                argument="-in"
-               label="Tabular output of DESeq2 or DEXSeq"/>
+               label="Tabular output of DESeq2/edgeR/limma/DEXSeq"/>
 
         <param name="mode" type="select" argument="-m" label="Input file type">
-                <option value="deseq2">DESeq2</option>
+                <option value="degseq">DESeq2/edgeR/limma</option>
                 <option value="dexseq">DEXseq</option>
         </param>
 
@@ -92,6 +92,19 @@
                 </assert_contents>
             </output>
         </test>
+        <test expect_num_outputs="1">
+            <param name="input_table"
+                value="edger_output.tabular"/>
+            <param name="annotation"
+               value="annotation.gtf"/>
+            <param name="mode"
+               value="degseq"/>
+            <output name="output">
+                <assert_contents>
+                    <has_text_matching expression="FBgn0039155\t-4.40480020002641\t5.8344799947229\t573.433304439283\t1.62187751744916e-36\t2.54342832286378e-32\tchr3R\t24141394\t24147490\t\+\tprotein_coding\tKal1"/>
+                </assert_contents>
+            </output>
+        </test>
     </tests>
 
     <help>
@@ -99,7 +112,7 @@
 
 **What it does**
 
-    This tool appends the output table of DESeq2 or DEXSeq with gene symbols, biotypes, positions etc. The information
+    This tool appends the output table of DESeq2/edgeR/limma/DEXSeq with gene symbols, biotypes, positions etc. The information
     you want to add is configurable. This information should present in the input GTF/GFF file as attributes of feature
     you choose.
     DEXSeq-Count tool is used to prepare the DEXSeq compatible annotation (flattened GTF file) from input GTF/GFF. In