# HG changeset patch
# User iuc
# Date 1542956387 18000
# Node ID b42373cddb77ce2f63d1f93449be5598c366d8be

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deg_annotate commit bc766aeec78fe74a1d70d608d2f73ba3f2a3e047

diff -r 000000000000 -r b42373cddb77 deg_annotate.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/deg_annotate.py	Fri Nov 23 01:59:47 2018 -0500
@@ -0,0 +1,178 @@
+import argparse
+import os
+from collections import defaultdict
+
+from BCBio import GFF
+
+
+def strandardize(strand):
+    if str(strand) == '-1':
+        strand = '-'
+    elif str(strand) == '1':
+        strand = '+'
+    return strand
+
+
+def gff_to_dict(f_gff, feat_type, idattr, txattr, attributes, input_type):
+    """
+    It reads only exonic features because not all GFF files contain gene and trascript features. From the exonic
+    features it extracts gene names, biotypes, start and end positions. If any of these attributes do not exit
+    then they are set to NA.
+    """
+    annotation = defaultdict(lambda: defaultdict(lambda: 'NA'))
+    exon_pos = defaultdict(lambda: defaultdict(lambda: defaultdict(int)))
+    tx_info = defaultdict(lambda: defaultdict(str))
+
+    with open(f_gff) as gff_handle:
+        for rec in GFF.parse(gff_handle, limit_info=dict(gff_type=[feat_type]), target_lines=1):
+            for sub_feature in rec.features:
+                start = sub_feature.location.start
+                end = sub_feature.location.end
+                strand = strandardize(sub_feature.location.strand)
+                try:
+                    geneid = sub_feature.qualifiers[idattr][0]
+                except KeyError:
+                    print("No '" + idattr + "' attribute found for the feature at position "
+                          + rec.id + ":" + str(start) + ":" + str(end) + ". Please check your GTF/GFF file.")
+                    continue
+
+                annotation[geneid]['chr'] = rec.id
+                annotation[geneid]['strand'] = strand
+                if annotation[geneid]['start'] == 'NA' or start <= int(annotation[geneid]['start']):
+                    annotation[geneid]['start'] = start
+                if annotation[geneid]['end'] == 'NA' or end >= int(annotation[geneid]['end']):
+                    annotation[geneid]['end'] = end
+
+                for attr in attributes:
+                    if attr in annotation[geneid]:
+                        continue
+                    try:
+                        annotation[geneid][attr] = sub_feature.qualifiers[attr][0]
+                    except KeyError:
+                        annotation[geneid][attr] = 'NA'
+                # extract exon information only in case of dexseq output
+                if input_type != "dexseq":
+                    continue
+                try:
+                    txid = sub_feature.qualifiers[txattr][0]
+                    tx_info[txid]['chr'] = rec.id
+                    tx_info[txid]['strand'] = strand
+                    exon_pos[txid][int(start)][int(end)] = 1
+                except KeyError:
+                    print("No '" + txattr + "' attribute found for the feature at position " + rec.id + ":" + str(
+                        start) + ":" + str(end) + ". Please check your GTF/GFF file.")
+                    pass
+
+    bed_entries = []
+    # create BED lines only for deseq output
+    if input_type == "dexseq":
+        for txid in exon_pos.keys():
+            starts = sorted(exon_pos[txid])
+            strand = tx_info[txid]['strand']
+            if strand == '-':
+                starts = reversed(starts)
+            for c, start in enumerate(starts, 1):
+                ends = sorted(exon_pos[txid][start])
+                if strand == '-':
+                    ends = reversed(ends)
+                for end in ends:
+                    bed_entries.append('\t'.join([tx_info[txid]['chr'], str(start), str(end),
+                                                  txid + ':' + str(c), '0', strand]))
+
+    return annotation, bed_entries
+
+
+def main():
+    parser = argparse.ArgumentParser(description='Annotate DESeq2/DEXSeq tables with information from GFF/GTF files')
+    parser.add_argument('-in', '--input', required=True,
+                        help='DESeq2/DEXSeq output. It is allowed to have extra information, '
+                             'but make sure that the original output columns are not altered')
+    parser.add_argument('-m', '--mode', required=True, choices=["deseq2", "dexseq"], default='deseq2',
+                        help='Input file type')
+    parser.add_argument('-g', '--gff', required=True, help='The same annotation GFF/GTF file used for couting')
+    parser.add_argument('-t', '--type', default='exon', required=False,
+                        help='feature type (3rd column in GFF file) to be used (default: exon)')
+    parser.add_argument('-i', '--idattr', default='gene_id', required=False,
+                        help='GFF attribute to be used as feature ID. '
+                             'This should match the first column of DESeq2 output(default: geneid)')
+    parser.add_argument('-x', '--txattr', default='transcript_id', required=False,
+                        help='GFF attribute to be used as transcript ID. Used for DEXSeq output only.'
+                             'This should match the first column of DESeq2 output(default: transcript_id)')
+    parser.add_argument('-a', '--attributes', default='gene_biotype, gene_name', required=False,
+                        help='Comma separated attributes to include in output. Default: gene_biotype, gene_name')
+    parser.add_argument('-o', '--output', required=True, help='Output file')
+    args = parser.parse_args()
+
+    print("DE(X)Seq output file     : %s" % args.input)
+    print("Input file type          : %s" % args.mode)
+    print("Annotation file          : %s" % args.gff)
+    print("Feature type             : %s" % args.type)
+    print("ID attribute             : %s" % args.idattr)
+    print("Transcript attribute     : %s" % args.txattr)
+    print("Attributes to include    : %s" % args.attributes)
+    print("Annotated output file    : %s" % args.output)
+
+    attr = [x.strip() for x in args.attributes.split(',')]
+    annotation, bed_entries = gff_to_dict(args.gff, args.type, args.idattr, args.txattr, attr, args.mode)
+
+    d_binexon = {}
+    skip_exon_annotation = False
+
+    if args.mode == "dexseq":
+        with open(args.input) as fh_input, open("input.bed", "w") as fh_input_bed:
+            for line in fh_input:
+                f = line.split('\t')
+                fh_input_bed.write('\t'.join([f[11], f[12], f[13], f[0], "0", f[15]]) + "\n")
+
+        if len(bed_entries) == 0 and args.mode == "dexseq":
+            print("It seems there are no transcript ids present in GFF file. Skipping exon annotation.")
+            skip_exon_annotation = True
+
+        if not skip_exon_annotation:
+            with open("annotation.bed", "w") as fh_annotation_bed:
+                for line in bed_entries:
+                    fh_annotation_bed.write(line + "\n")
+
+            # interset the DEXseq couting bins with exons in the GFF file
+            # overlaped positions can be later used to infer which bin corresponds to which exon
+            os.system("intersectBed -wo -s -a input.bed -b annotation.bed > overlap.txt")
+
+            with open("overlap.txt") as fh_overlap:
+                for line in fh_overlap:
+                    binid = line.split('\t')[3]
+                    exonid = line.split('\t')[9]
+                    d_binexon.setdefault(binid, []).append(exonid)
+
+    with open(args.input) as fh_input, open(args.output, 'w') as fh_output:
+        for line in fh_input:
+            annot = []
+            # Append the extra information from GFF to DESeq2 output
+            if args.mode == "deseq2":
+                geneid = line.split('\t')[0]
+                annot = [str(annotation[geneid]['chr']),
+                         str(annotation[geneid]['start']),
+                         str(annotation[geneid]['end']),
+                         str(annotation[geneid]['strand'])]
+                for a in attr:
+                    annot.append(annotation[geneid][a])
+            # DEXSeq exonic bins might originate from aggrigating multiple genes. They are are separated by '+'
+            # Append the attributes from the GFF but keep the order of the aggregated genes and use '+'
+            # Aappend the transcript id and exon number from the annotation that correspond to the DEXseq counting bins
+            elif args.mode == "dexseq":
+                geneids = line.split('\t')[1].split('+')
+                for a in attr:
+                    tmp = []
+                    for geneid in geneids:
+                        tmp.append(str(annotation[geneid][a]))
+                    annot.append('+'.join(tmp))
+                if not skip_exon_annotation:
+                    binid = line.split('\t')[0]
+                    try:
+                        annot.append(','.join(sorted(set(d_binexon[binid]))))
+                    except KeyError:
+                        annot.append('NA')
+            fh_output.write(line.rstrip('\n') + '\t' + '\t'.join(annot) + '\n')
+
+
+if __name__ == "__main__":
+    main()
diff -r 000000000000 -r b42373cddb77 deg_annotate.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/deg_annotate.xml	Fri Nov 23 01:59:47 2018 -0500
@@ -0,0 +1,125 @@
+<tool id="deg_annotate" name="Annotate DESeq2/DEXSeq output tables" version="1.0">
+    <description>Append useful information from annotation files to DESeq2/DEXSeq outputs</description>
+    <requirements>
+        <requirement type="package" version="2.27.0">bedtools</requirement>
+        <requirement type="package" version="0.6.4">bcbiogff</requirement>
+    </requirements>
+    <command>
+    <![CDATA[
+        python '$__tool_directory__/deg_annotate.py' -in '$input_table'
+        -m '$mode'
+        -g '$annotation'
+        -t '$advanced_parameters.gff_feature_type'
+        -i '$advanced_parameters.gff_feature_attribute'
+        -x '$advanced_parameters.gff_transcript_attribute'
+        -a '$advanced_parameters.gff_attributes'
+        -o '$output'
+    ]]>
+    </command>
+    <inputs>
+        <param name="input_table"
+               type="data"
+               format="tabular"
+               argument="-in"
+               label="Tabular output of DESeq2 or DEXSeq"/>
+
+        <param name="mode" type="select" argument="-m" label="Input file type">
+                <option value="deseq2">DESeq2</option>
+                <option value="dexseq">DEXseq</option>
+        </param>
+
+        <param name="annotation"
+               type="data"
+               format="gff,gtf,gff3"
+               argument="-g"
+               label="Reference annotation in GFF/GTF format" />
+
+        <section name="advanced_parameters" title="Advanced options">
+            <param name="gff_feature_type"
+                type="text"
+                value="exon"
+                argument="-t"
+                label="GFF feature type"
+                help="This is the 3rd column in GFF file. Only rows which have the matched feature type in the GTF annotation file will be included. `exon' by default." />
+
+            <param name="gff_feature_attribute"
+                type="text"
+                value="gene_id"
+                argument="-i"
+                label="GFF feature identifier"
+                help="GFF attribute to be used as feature identifier. The value of this attribute should match the first column of DESeq2 output (default: gene_id)" />
+
+            <param name="gff_transcript_attribute"
+                type="text"
+                value="transcript_id"
+                argument="-x"
+                label="GFF transcript identifier"
+                help="GFF attribute to be used as transcript identifier. This options is only used for DEXSeq output annotation. Exon numbers are counted for each transcript separately (default: transcript_id)" />
+
+            <param name="gff_attributes"
+                type="text"
+                value="gene_biotype, gene_name"
+                argument="-a"
+                label="GFF attributes to include"
+                help="Comma separated list of attributes from GFF file to include in output. These attributes should associate with your chosen GFF feature type." />
+        </section>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" label="${tool.name} on ${on_string}"/>
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <param name="input_table"
+                value="deseq2_output.tabular"/>
+            <param name="annotation"
+               value="annotation.gtf"/>
+            <output name="output">
+                <assert_contents>
+                    <has_text_matching expression="FBgn0025111\t2192.32236942864\t2.69993841720991\t0.0979447231457099\t27.565940568266\t2.8504782974107e-167\t6.1121380892229e-164\tchrX\t10778953\t10786907\t-\tprotein_coding\tAnt2"/>
+                </assert_contents>
+            </output>
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input_table"
+                value="dexseq_output.tabular"/>
+            <param name="annotation"
+               value="annotation.gtf"/>
+            <param name="mode"
+               value="dexseq"/>
+            <output name="output">
+                <assert_contents>
+                    <has_text_matching expression="FBgn0025111\+FBgn0003360:E005\tFBgn0025111\+FBgn0003360\tE005\t0.273966640920426\t6.62572321505791\t0.774068626605711\t0.378961325638675\tNA\t0.41523701984849\t1.17020080867011\t2.99101950917789\tchrX\t10780596\t10780661\t66\t-\t10\t0\t0\t0\t0\t0\t2\tFBtr0073425, FBtr0333963\tprotein_coding\+protein_coding\tAnt2\+sesB\tFBtr0073425:1,FBtr0333963:1"/>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+
+    <help>
+       <![CDATA[
+
+**What it does**
+
+    This tool appends the output table of DESeq2 or DEXSeq with gene symbols, biotypes, positions etc. The information
+    you want to add is configurable. This information should present in the input GTF/GFF file as attributes of feature
+    you choose.
+    DEXSeq-Count tool is used to prepare the DEXSeq compatible annotation (flattened GTF file) from input GTF/GFF. In
+    this  process, the exons that appear multiple times, once for each transcript are collapsed to so called
+    *exon counting bins*. Counting bins for parts of exons arise when an exonic region appears with different
+    boundaries in different transcripts. The resulting flattened GTF file contains pseudo exon ids per gene instead
+    of per transcript. This tool maps the DEXSeq couting bins back to the original exon ids. This mapping is only
+    possible if the input GTF/GFF file contains transcript identifier attribute for the chosen features type.
+
+**Inputs**
+
+**Differential gene expression tables**
+    At the moment, this tool supports DESeq2 and DEXSeq tool outputs.
+
+**Annotation**
+    Annotation file ne GTF or GFF3 format that was used for counting.
+
+**Outputs**
+    Input tabular file and with chosen attributes appended as additional columns.
+
+        ]]>
+    </help>
+</tool>
diff -r 000000000000 -r b42373cddb77 test-data/annotation.gtf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotation.gtf	Fri Nov 23 01:59:47 2018 -0500
@@ -0,0 +1,360 @@
+chr3R	FlyBase	gene	6762593	6765261	.	+	.	gene_id "FBgn0000071"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chr3R	FlyBase	transcript	6762593	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	6762593	6762996	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; exon_number "1"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0081618-E1";
+chr3R	FlyBase	CDS	6762980	6762996	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; exon_number "1"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0081135";
+chr3R	FlyBase	start_codon	6762980	6762982	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; exon_number "1"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	6763833	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0081618-E2";
+chr3R	FlyBase	CDS	6763833	6764838	.	+	1	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0081135";
+chr3R	FlyBase	stop_codon	6764839	6764841	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	6762593	6762979	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	three_prime_utr	6764842	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081618"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	transcript	6763404	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	6763404	6763516	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; exon_number "1"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0081619-E1";
+chr3R	FlyBase	exon	6763833	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0081619-E2";
+chr3R	FlyBase	CDS	6763840	6764838	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0081136";
+chr3R	FlyBase	start_codon	6763840	6763842	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	stop_codon	6764839	6764841	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	6763404	6763516	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	6763833	6763839	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	three_prime_utr	6764842	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081619"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	transcript	6763404	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	6763404	6763500	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; exon_number "1"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0081620-E1";
+chr3R	FlyBase	exon	6763833	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0081619-E2";
+chr3R	FlyBase	CDS	6763840	6764838	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0081137";
+chr3R	FlyBase	start_codon	6763840	6763842	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	stop_codon	6764839	6764841	.	+	0	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; exon_number "2"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	6763404	6763500	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	6763833	6763839	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	three_prime_utr	6764842	6765261	.	+	.	gene_id "FBgn0000071"; transcript_id "FBtr0081620"; gene_name "Ama"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ama-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	gene	10780893	10786958	.	-	.	gene_id "FBgn0003360"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chrX	FlyBase	transcript	10780893	10784458	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10784351	10784458	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "1"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E1";
+chrX	FlyBase	exon	10782777	10782889	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E2";
+chrX	FlyBase	CDS	10782777	10782811	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073280";
+chrX	FlyBase	start_codon	10782809	10782811	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10782380	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E3";
+chrX	FlyBase	CDS	10782380	10782680	.	-	1	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073280";
+chrX	FlyBase	exon	10782173	10782300	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E4";
+chrX	FlyBase	CDS	10782173	10782300	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073280";
+chrX	FlyBase	exon	10780893	10782095	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "5"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E5";
+chrX	FlyBase	CDS	10781624	10782095	.	-	1	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "5"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073280";
+chrX	FlyBase	stop_codon	10781621	10781623	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; exon_number "5"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10784351	10784458	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10782812	10782889	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10780893	10781620	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073424"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RD"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	transcript	10780993	10784458	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10784351	10784458	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "1"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E1";
+chrX	FlyBase	exon	10782380	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073423-E2";
+chrX	FlyBase	CDS	10782380	10782676	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073279";
+chrX	FlyBase	start_codon	10782674	10782676	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10782173	10782300	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E4";
+chrX	FlyBase	CDS	10782173	10782300	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073279";
+chrX	FlyBase	exon	10780993	10782095	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073423-E4";
+chrX	FlyBase	CDS	10781624	10782095	.	-	1	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073279";
+chrX	FlyBase	stop_codon	10781621	10781623	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10784351	10784458	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10782677	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10780993	10781620	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073423"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	transcript	10780993	10786907	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10786806	10786907	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "1"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073422-E1";
+chrX	FlyBase	exon	10782777	10782889	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E2";
+chrX	FlyBase	CDS	10782777	10782811	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073278";
+chrX	FlyBase	start_codon	10782809	10782811	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10782380	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E3";
+chrX	FlyBase	CDS	10782380	10782680	.	-	1	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073278";
+chrX	FlyBase	exon	10782173	10782300	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E4";
+chrX	FlyBase	CDS	10782173	10782300	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073278";
+chrX	FlyBase	exon	10780993	10782095	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "5"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073423-E4";
+chrX	FlyBase	CDS	10781624	10782095	.	-	1	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "5"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073278";
+chrX	FlyBase	stop_codon	10781621	10781623	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; exon_number "5"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10786806	10786907	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10782812	10782889	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10780993	10781620	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073422"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	transcript	10780993	10786958	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10786806	10786958	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "1"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0346384-E1";
+chrX	FlyBase	exon	10782380	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073423-E2";
+chrX	FlyBase	CDS	10782380	10782676	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0312078";
+chrX	FlyBase	start_codon	10782674	10782676	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10782173	10782300	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E4";
+chrX	FlyBase	CDS	10782173	10782300	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0312078";
+chrX	FlyBase	exon	10780993	10782095	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073423-E4";
+chrX	FlyBase	CDS	10781624	10782095	.	-	1	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0312078";
+chrX	FlyBase	stop_codon	10781621	10781623	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10786806	10786958	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10782677	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10780993	10781620	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0346384"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RE"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	transcript	10780993	10786907	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10786806	10786907	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "1"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073422-E1";
+chrX	FlyBase	exon	10782380	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073423-E2";
+chrX	FlyBase	CDS	10782380	10782676	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073277";
+chrX	FlyBase	start_codon	10782674	10782676	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "2"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10782173	10782300	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073424-E4";
+chrX	FlyBase	CDS	10782173	10782300	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "3"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073277";
+chrX	FlyBase	exon	10780993	10782095	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073423-E4";
+chrX	FlyBase	CDS	10781624	10782095	.	-	1	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073277";
+chrX	FlyBase	stop_codon	10781621	10781623	.	-	0	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; exon_number "4"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10786806	10786907	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10782677	10782680	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10780993	10781620	.	-	.	gene_id "FBgn0003360"; transcript_id "FBtr0073421"; gene_name "sesB"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "sesB-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	gene	10778954	10786907	.	-	.	gene_id "FBgn0025111"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chrX	FlyBase	transcript	10778954	10780661	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10780596	10780661	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "1"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E1";
+chrX	FlyBase	exon	10780197	10780526	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E2";
+chrX	FlyBase	CDS	10780197	10780517	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0306086";
+chrX	FlyBase	start_codon	10780515	10780517	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10779993	10780120	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "3"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E3";
+chrX	FlyBase	CDS	10779993	10780120	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "3"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0306086";
+chrX	FlyBase	exon	10778954	10779695	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "4"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E4";
+chrX	FlyBase	CDS	10779224	10779695	.	-	1	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "4"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0306086";
+chrX	FlyBase	stop_codon	10779221	10779223	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; exon_number "4"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10780596	10780661	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10780518	10780526	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10778954	10779220	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0333963"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RC"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	transcript	10778954	10780661	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10780197	10780661	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "1"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073425-E1";
+chrX	FlyBase	CDS	10780197	10780517	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "1"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073281";
+chrX	FlyBase	start_codon	10780515	10780517	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "1"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10779993	10780120	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E3";
+chrX	FlyBase	CDS	10779993	10780120	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073281";
+chrX	FlyBase	exon	10778954	10779695	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "3"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E4";
+chrX	FlyBase	CDS	10779224	10779695	.	-	1	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "3"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073281";
+chrX	FlyBase	stop_codon	10779221	10779223	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; exon_number "3"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10780518	10780661	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10778954	10779220	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073425"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	transcript	10778954	10786907	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10786806	10786907	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "1"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0073426-E1";
+chrX	FlyBase	exon	10780197	10780526	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E2";
+chrX	FlyBase	CDS	10780197	10780517	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073282";
+chrX	FlyBase	start_codon	10780515	10780517	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "2"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	exon	10779993	10780120	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "3"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E3";
+chrX	FlyBase	CDS	10779993	10780120	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "3"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073282";
+chrX	FlyBase	exon	10778954	10779695	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "4"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333963-E4";
+chrX	FlyBase	CDS	10779224	10779695	.	-	1	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "4"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0073282";
+chrX	FlyBase	stop_codon	10779221	10779223	.	-	0	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; exon_number "4"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10786806	10786907	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	five_prime_utr	10780518	10780526	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chrX	FlyBase	three_prime_utr	10778954	10779220	.	-	.	gene_id "FBgn0025111"; transcript_id "FBtr0073426"; gene_name "Ant2"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Ant2-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	gene	26869238	26871995	.	-	.	gene_id "FBgn0026562"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chr3R	FlyBase	transcript	26869238	26871995	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	26871926	26871995	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; exon_number "1"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085094-E1";
+chr3R	FlyBase	exon	26870193	26870372	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; exon_number "2"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085094-E2";
+chr3R	FlyBase	CDS	26870193	26870354	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; exon_number "2"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0084464";
+chr3R	FlyBase	start_codon	26870352	26870354	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; exon_number "2"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	26869238	26870130	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; exon_number "3"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085094-E3";
+chr3R	FlyBase	CDS	26869381	26870130	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; exon_number "3"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0084464";
+chr3R	FlyBase	stop_codon	26869378	26869380	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; exon_number "3"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	26871926	26871995	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	26870355	26870372	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	three_prime_utr	26869238	26869377	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0085094"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	transcript	26869238	26870567	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	26870510	26870567	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; exon_number "1"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0334309-E1";
+chr3R	FlyBase	exon	26870193	26870372	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; exon_number "2"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085094-E2";
+chr3R	FlyBase	CDS	26870193	26870354	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; exon_number "2"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0306424";
+chr3R	FlyBase	start_codon	26870352	26870354	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; exon_number "2"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	26869238	26870130	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; exon_number "3"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085094-E3";
+chr3R	FlyBase	CDS	26869381	26870130	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; exon_number "3"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0306424";
+chr3R	FlyBase	stop_codon	26869378	26869380	.	-	0	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; exon_number "3"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	26870510	26870567	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	26870355	26870372	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	three_prime_utr	26869238	26869377	.	-	.	gene_id "FBgn0026562"; transcript_id "FBtr0334309"; gene_name "BM-40-SPARC"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "BM-40-SPARC-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	gene	13846054	13860001	.	+	.	gene_id "FBgn0029167"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chr3L	FlyBase	transcript	13846054	13860001	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	exon	13846054	13846314	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "1"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E1";
+chr3L	FlyBase	CDS	13846208	13846314	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "1"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	start_codon	13846208	13846210	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "1"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	exon	13846846	13846941	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "2"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E2";
+chr3L	FlyBase	CDS	13846846	13846941	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "2"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13847022	13847186	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "3"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E3";
+chr3L	FlyBase	CDS	13847022	13847186	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "3"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13847248	13847640	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "4"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E4";
+chr3L	FlyBase	CDS	13847248	13847640	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "4"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13847698	13847825	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "5"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E5";
+chr3L	FlyBase	CDS	13847698	13847825	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "5"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13847882	13847977	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "6"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E6";
+chr3L	FlyBase	CDS	13847882	13847977	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "6"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13848081	13848278	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "7"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E7";
+chr3L	FlyBase	CDS	13848081	13848278	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "7"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13848391	13848554	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "8"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E8";
+chr3L	FlyBase	CDS	13848391	13848554	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "8"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13848611	13848768	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "9"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E9";
+chr3L	FlyBase	CDS	13848611	13848768	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "9"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13848830	13848984	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "10"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E10";
+chr3L	FlyBase	CDS	13848830	13848984	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "10"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13849050	13849652	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "11"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E11";
+chr3L	FlyBase	CDS	13849050	13849652	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "11"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13849795	13850913	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "12"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E12";
+chr3L	FlyBase	CDS	13849795	13850913	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "12"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13850996	13851889	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "13"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E13";
+chr3L	FlyBase	CDS	13850996	13851889	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "13"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13851942	13852490	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "14"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E14";
+chr3L	FlyBase	CDS	13851942	13852490	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "14"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13852567	13853889	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "15"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E15";
+chr3L	FlyBase	CDS	13852567	13853889	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "15"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13853954	13854032	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "16"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E16";
+chr3L	FlyBase	CDS	13853954	13854032	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "16"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13854094	13854343	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "17"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E17";
+chr3L	FlyBase	CDS	13854094	13854343	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "17"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13854397	13855144	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "18"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E18";
+chr3L	FlyBase	CDS	13854397	13855144	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "18"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13855205	13855690	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "19"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E19";
+chr3L	FlyBase	CDS	13855205	13855690	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "19"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13855751	13856257	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "20"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E20";
+chr3L	FlyBase	CDS	13855751	13856257	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "20"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13856322	13856805	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "21"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E21";
+chr3L	FlyBase	CDS	13856322	13856805	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "21"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13856870	13858647	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "22"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E22";
+chr3L	FlyBase	CDS	13856870	13858647	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "22"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13858706	13858918	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "23"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E23";
+chr3L	FlyBase	CDS	13858706	13858918	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "23"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13858980	13859435	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "24"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E24";
+chr3L	FlyBase	CDS	13858980	13859435	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "24"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13859492	13859748	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "25"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E25";
+chr3L	FlyBase	CDS	13859492	13859748	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "25"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	exon	13859806	13860001	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "26"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E26";
+chr3L	FlyBase	CDS	13859806	13859928	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "26"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0075495";
+chr3L	FlyBase	stop_codon	13859929	13859931	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; exon_number "26"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	five_prime_utr	13846054	13846207	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	three_prime_utr	13859932	13860001	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0075753"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	transcript	13846054	13860001	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	exon	13846054	13846314	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "1"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E1";
+chr3L	FlyBase	CDS	13846208	13846314	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "1"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	start_codon	13846208	13846210	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "1"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	exon	13846846	13846941	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "2"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E2";
+chr3L	FlyBase	CDS	13846846	13846941	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "2"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13847022	13847186	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "3"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E3";
+chr3L	FlyBase	CDS	13847022	13847186	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "3"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13847251	13847640	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "4"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0333020-E4";
+chr3L	FlyBase	CDS	13847251	13847640	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "4"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13847698	13847825	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "5"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E5";
+chr3L	FlyBase	CDS	13847698	13847825	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "5"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13847882	13847977	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "6"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E6";
+chr3L	FlyBase	CDS	13847882	13847977	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "6"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13848081	13848278	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "7"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E7";
+chr3L	FlyBase	CDS	13848081	13848278	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "7"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13848391	13848554	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "8"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E8";
+chr3L	FlyBase	CDS	13848391	13848554	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "8"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13848611	13848768	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "9"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E9";
+chr3L	FlyBase	CDS	13848611	13848768	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "9"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13848830	13848984	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "10"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E10";
+chr3L	FlyBase	CDS	13848830	13848984	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "10"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13849050	13849652	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "11"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E11";
+chr3L	FlyBase	CDS	13849050	13849652	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "11"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13849795	13850913	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "12"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E12";
+chr3L	FlyBase	CDS	13849795	13850913	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "12"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13850996	13851889	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "13"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E13";
+chr3L	FlyBase	CDS	13850996	13851889	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "13"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13851942	13852490	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "14"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E14";
+chr3L	FlyBase	CDS	13851942	13852490	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "14"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13852567	13853889	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "15"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E15";
+chr3L	FlyBase	CDS	13852567	13853889	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "15"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13853954	13854032	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "16"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E16";
+chr3L	FlyBase	CDS	13853954	13854032	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "16"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13854094	13854343	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "17"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E17";
+chr3L	FlyBase	CDS	13854094	13854343	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "17"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13854397	13855144	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "18"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E18";
+chr3L	FlyBase	CDS	13854397	13855144	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "18"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13855205	13855690	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "19"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E19";
+chr3L	FlyBase	CDS	13855205	13855690	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "19"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13855751	13856257	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "20"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E20";
+chr3L	FlyBase	CDS	13855751	13856257	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "20"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13856322	13856805	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "21"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E21";
+chr3L	FlyBase	CDS	13856322	13856805	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "21"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13856870	13858647	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "22"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E22";
+chr3L	FlyBase	CDS	13856870	13858647	.	+	1	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "22"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13858706	13858918	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "23"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E23";
+chr3L	FlyBase	CDS	13858706	13858918	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "23"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13858980	13859435	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "24"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E24";
+chr3L	FlyBase	CDS	13858980	13859435	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "24"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13859492	13859748	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "25"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E25";
+chr3L	FlyBase	CDS	13859492	13859748	.	+	2	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "25"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	exon	13859806	13860001	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "26"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0075753-E26";
+chr3L	FlyBase	CDS	13859806	13859928	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "26"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0305234";
+chr3L	FlyBase	stop_codon	13859929	13859931	.	+	0	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; exon_number "26"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	five_prime_utr	13846054	13846207	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	three_prime_utr	13859932	13860001	.	+	.	gene_id "FBgn0029167"; transcript_id "FBtr0333020"; gene_name "Hml"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Hml-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	gene	22550094	22552113	.	+	.	gene_id "FBgn0034736"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chr2R	FlyBase	transcript	22550094	22552113	.	+	.	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	exon	22550094	22550254	.	+	.	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; exon_number "1"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0071835-E1";
+chr2R	FlyBase	CDS	22550208	22550254	.	+	0	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; exon_number "1"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0071746";
+chr2R	FlyBase	start_codon	22550208	22550210	.	+	0	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; exon_number "1"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	exon	22550320	22552113	.	+	.	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; exon_number "2"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0071835-E2";
+chr2R	FlyBase	CDS	22550320	22551970	.	+	1	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; exon_number "2"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0071746";
+chr2R	FlyBase	stop_codon	22551971	22551973	.	+	0	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; exon_number "2"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	five_prime_utr	22550094	22550207	.	+	.	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	three_prime_utr	22551974	22552113	.	+	.	gene_id "FBgn0034736"; transcript_id "FBtr0071835"; gene_name "CG6018"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG6018-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	gene	24945139	24946636	.	+	.	gene_id "FBgn0035085"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chr2R	FlyBase	transcript	24945139	24946636	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	exon	24945139	24946163	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "1"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0072393-E1";
+chr2R	FlyBase	CDS	24945761	24946163	.	+	0	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "1"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0072300";
+chr2R	FlyBase	start_codon	24945761	24945763	.	+	0	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "1"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	exon	24946219	24946332	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "2"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0343502-E2";
+chr2R	FlyBase	CDS	24946219	24946332	.	+	2	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "2"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0072300";
+chr2R	FlyBase	exon	24946383	24946636	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "3"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0343502-E3";
+chr2R	FlyBase	CDS	24946383	24946522	.	+	2	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "3"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0072300";
+chr2R	FlyBase	stop_codon	24946523	24946525	.	+	0	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; exon_number "3"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	five_prime_utr	24945139	24945760	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	three_prime_utr	24946526	24946636	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0072393"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	transcript	24945665	24946636	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	exon	24945665	24946163	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "1"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0343502-E1";
+chr2R	FlyBase	CDS	24945761	24946163	.	+	0	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "1"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0310107";
+chr2R	FlyBase	start_codon	24945761	24945763	.	+	0	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "1"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	exon	24946219	24946332	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "2"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0343502-E2";
+chr2R	FlyBase	CDS	24946219	24946332	.	+	2	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "2"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0310107";
+chr2R	FlyBase	exon	24946383	24946636	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "3"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0343502-E3";
+chr2R	FlyBase	CDS	24946383	24946522	.	+	2	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "3"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0310107";
+chr2R	FlyBase	stop_codon	24946523	24946525	.	+	0	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; exon_number "3"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	five_prime_utr	24945665	24945760	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr2R	FlyBase	three_prime_utr	24946526	24946636	.	+	.	gene_id "FBgn0035085"; transcript_id "FBtr0343502"; gene_name "CG3770"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG3770-RB"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	gene	24141395	24147490	.	+	.	gene_id "FBgn0039155"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chr3R	FlyBase	transcript	24141395	24147490	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	24141395	24141660	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "1"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0084549-E1";
+chr3R	FlyBase	exon	24145193	24145870	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "2"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0084549-E2";
+chr3R	FlyBase	CDS	24145224	24145870	.	+	0	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "2"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0083934";
+chr3R	FlyBase	start_codon	24145224	24145226	.	+	0	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "2"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	24145930	24146048	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "3"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0084549-E3";
+chr3R	FlyBase	CDS	24145930	24146048	.	+	1	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "3"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0083934";
+chr3R	FlyBase	exon	24146109	24146302	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "4"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0084549-E4";
+chr3R	FlyBase	CDS	24146109	24146302	.	+	2	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "4"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0083934";
+chr3R	FlyBase	exon	24146366	24146739	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "5"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0084549-E5";
+chr3R	FlyBase	CDS	24146366	24146739	.	+	0	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "5"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0083934";
+chr3R	FlyBase	exon	24146801	24146867	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "6"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0084549-E6";
+chr3R	FlyBase	CDS	24146801	24146867	.	+	1	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "6"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0083934";
+chr3R	FlyBase	exon	24147196	24147490	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "7"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0084549-E7";
+chr3R	FlyBase	CDS	24147196	24147369	.	+	0	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "7"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0083934";
+chr3R	FlyBase	stop_codon	24147370	24147372	.	+	0	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; exon_number "7"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	24141395	24141660	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	24145193	24145223	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	three_prime_utr	24147373	24147490	.	+	.	gene_id "FBgn0039155"; transcript_id "FBtr0084549"; gene_name "Kal1"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "Kal1-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	gene	31196916	31203722	.	+	.	gene_id "FBgn0039827"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding";
+chr3R	FlyBase	transcript	31196916	31203722	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	31196916	31197135	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "1"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E1";
+chr3R	FlyBase	CDS	31197012	31197135	.	+	0	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "1"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	start_codon	31197012	31197014	.	+	0	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "1"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	exon	31199171	31199288	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "2"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E2";
+chr3R	FlyBase	CDS	31199171	31199288	.	+	2	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "2"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31199457	31199634	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "3"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E3";
+chr3R	FlyBase	CDS	31199457	31199634	.	+	1	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "3"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31199721	31199940	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "4"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E4";
+chr3R	FlyBase	CDS	31199721	31199940	.	+	0	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "4"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31200404	31200565	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "5"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E5";
+chr3R	FlyBase	CDS	31200404	31200565	.	+	2	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "5"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31200909	31200982	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "6"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E6";
+chr3R	FlyBase	CDS	31200909	31200982	.	+	2	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "6"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31201059	31201820	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "7"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E7";
+chr3R	FlyBase	CDS	31201059	31201820	.	+	0	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "7"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31201881	31202298	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "8"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E8";
+chr3R	FlyBase	CDS	31201881	31202298	.	+	0	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "8"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31202355	31202678	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "9"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E9";
+chr3R	FlyBase	CDS	31202355	31202678	.	+	2	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "9"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31203048	31203236	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "10"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E10";
+chr3R	FlyBase	CDS	31203048	31203236	.	+	2	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "10"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31203372	31203457	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "11"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E11";
+chr3R	FlyBase	CDS	31203372	31203457	.	+	2	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "11"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	exon	31203542	31203722	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "12"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; exon_id "FBtr0085755-E12";
+chr3R	FlyBase	CDS	31203542	31203643	.	+	0	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "12"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding"; protein_id "FBpp0085117";
+chr3R	FlyBase	stop_codon	31203644	31203646	.	+	0	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; exon_number "12"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	five_prime_utr	31196916	31197011	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3R	FlyBase	three_prime_utr	31203647	31203722	.	+	.	gene_id "FBgn0039827"; transcript_id "FBtr0085755"; gene_name "CG1544"; gene_source "FlyBase"; gene_biotype "protein_coding"; transcript_name "CG1544-RA"; transcript_source "FlyBase"; transcript_biotype "protein_coding";
+chr3L	FlyBase	gene	820759	821512	.	+	.	gene_id "FBgn0264475"; gene_name "CR43883"; gene_source "FlyBase"; gene_biotype "lincRNA";
+chr3L	FlyBase	transcript	820759	821512	.	+	.	gene_id "FBgn0264475"; transcript_id "FBtr0332751"; gene_name "CR43883"; gene_source "FlyBase"; gene_biotype "lincRNA"; transcript_name "CR43883-RA"; transcript_source "FlyBase"; transcript_biotype "lincRNA";
+chr3L	FlyBase	exon	820759	821512	.	+	.	gene_id "FBgn0264475"; transcript_id "FBtr0332751"; exon_number "1"; gene_name "CR43883"; gene_source "FlyBase"; gene_biotype "lincRNA"; transcript_name "CR43883-RA"; transcript_source "FlyBase"; transcript_biotype "lincRNA"; exon_id "FBtr0332751-E1";
diff -r 000000000000 -r b42373cddb77 test-data/deseq2_output.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/deseq2_output.tabular	Fri Nov 23 01:59:47 2018 -0500
@@ -0,0 +1,10 @@
+FBgn0039155	1086.97429520489	-4.14844887121203	0.134949009976641	-30.7408618405583	1.61992743879e-207	1.38941176425019e-203
+FBgn0003360	6409.57712820784	-2.99977687808929	0.104345174652411	-28.7485922380405	9.43213642530181e-182	4.04497170599068e-178
+FBgn0026562	65114.8405637953	-2.38016378555818	0.0843270368933908	-28.22539334054	2.85397270642668e-175	8.15950796767388e-172
+FBgn0025111	2192.32236942864	2.69993841720991	0.0979447231457099	27.565940568266	2.8504782974107e-167	6.1121380892229e-164
+FBgn0029167	5430.06727658048	-2.1050612887726	0.0925467282777971	-22.7459287642654	1.57453789049645e-114	2.70096229735761e-111
+FBgn0039827	390.901782011095	-3.50301240162969	0.160029809280641	-21.88974927469	3.25298224788205e-106	4.6501381233474e-103
+FBgn0035085	928.263812261588	-2.41407351603462	0.115185333184648	-20.9581675834087	1.58055521794036e-97	1.93663172918206e-94
+FBgn0034736	330.38302328757	-3.01817719625006	0.158154372479841	-19.0837417197224	3.44677215747821e-81	3.69537059933632e-78
+FBgn0264475	955.454453674265	-2.33448569609426	0.124230191435521	-18.7916131265557	8.84494667012502e-79	8.42923417662915e-76
+FBgn0000071	468.057925667952	2.36001641134183	0.13564419237713	17.3985805804372	8.45727146596554e-68	7.25380173635864e-65
diff -r 000000000000 -r b42373cddb77 test-data/dexseq_output.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dexseq_output.tabular	Fri Nov 23 01:59:47 2018 -0500
@@ -0,0 +1,74 @@
+FBgn0000071:E001	FBgn0000071	E001	0.0192506486025934	14	0.0199243738540247	0.887748502701671	NA	0.0270972419820765	0.26215027289167	6.5484386673406	chr3R	6762593	6762996	404	+	1	0	0	0	0	0	0	FBtr0081618
+FBgn0000071:E002	FBgn0000071	E002	0.363216696948006	5.84518530646982	0.0113232157782903	0.915256583298	NA	1.1031345072124	0.623779161487839	-1.64605496381894	chr3R	6763404	6763500	97	+	7	0	0	7	0	0	2	FBtr0081619, FBtr0081620
+FBgn0000071:E003	FBgn0000071	E003	0.784502185963002	4.82131756123766	0.00622165600043445	0.937130080067176	NA	1.03116251478534	1.16708916978339	0.357665857300601	chr3R	6763501	6763516	16	+	31	0	0	7	0	0	1	FBtr0081619
+FBgn0000071:E004	FBgn0000071	E004	26.3510395213692	1.96800519978103	0.00561951934103888	0.940243790029249	1	5.42399545115501	5.87836276689312	0.238607928271459	chr3R	6763833	6765261	1429	+	965	0	1	183	0	0	82	FBtr0081619, FBtr0081618, FBtr0081620
+FBgn0025111+FBgn0003360:E001	FBgn0025111+FBgn0003360	E001	90.0645737707993	0.0126372415767218	266.729686621202	5.85700535276357e-60	7.03514197947196e-56	7.55262108655923	19.0700856066207	3.0486661948835	chrX	10778954	10779695	742	-	3297	1	0	555	1	0	341	FBtr0073425, FBtr0073426, FBtr0333963
+FBgn0025111+FBgn0003360:E002	FBgn0025111+FBgn0003360	E002	12.6315028999338	0.0374837624127616	69.0471690350968	9.6136433108249e-17	1.53965702170631e-13	2.85427512792234	8.93432009189011	3.38287587486196	chrX	10779993	10780120	128	-	483	0	0	54	0	0	54	FBtr0073425, FBtr0073426, FBtr0333963
+FBgn0025111+FBgn0003360:E003	FBgn0025111+FBgn0003360	E003	27.0879920211274	0.0102790782383009	240.828983563173	2.59388895137782e-54	2.07709980929831e-50	4.28496921256544	13.1457280028538	3.42758025357735	chrX	10780197	10780526	330	-	1025	0	0	135	0	0	111	FBtr0073425, FBtr0073426, FBtr0333963
+FBgn0025111+FBgn0003360:E004	FBgn0025111+FBgn0003360	E004	0.571953699696933	3.19738473523419	1.35362539704593	0.244645318616069	NA	0.664852761525701	1.62420816847541	2.58005011767578	chrX	10780527	10780595	69	-	19	0	0	4	0	0	3	FBtr0073425
+FBgn0025111+FBgn0003360:E005	FBgn0025111+FBgn0003360	E005	0.273966640920426	6.62572321505791	0.774068626605711	0.378961325638675	NA	0.41523701984849	1.17020080867011	2.99101950917789	chrX	10780596	10780661	66	-	10	0	0	0	0	0	2	FBtr0073425, FBtr0333963
+FBgn0025111+FBgn0003360:E006	FBgn0025111+FBgn0003360	E006	0.745311945942461	5.357718424361	1.46992595946872	0.225357375991809	NA	0.504555945672202	1.65071837177629	3.42315484512434	chrX	10780893	10780992	100	-	3	1	0	0	0	0	3	FBtr0073424
+FBgn0025111+FBgn0003360:E007	FBgn0025111+FBgn0003360	E007	545.847775517443	0.00833350838114172	207.741013858374	4.27292204331129e-47	2.56621015616168e-43	23.6260619029107	12.5792144461011	-2.2978357205501	chrX	10780993	10782095	1103	-	872	0	0	10527	11	2	7403	FBtr0073424, FBtr0346384, FBtr0073421, FBtr0073423, FBtr0073422
+FBgn0025111+FBgn0003360:E008	FBgn0025111+FBgn0003360	E008	81.6833873705682	0.211161242432226	2.10416871447788	0.146898156016142	1	10.4870761158077	4.81409558326169	-2.35561606761604	chrX	10782173	10782300	128	-	149	0	0	759	1	1	1518	FBtr0073424, FBtr0346384, FBtr0073421, FBtr0073423, FBtr0073422
+FBgn0025111+FBgn0003360:E009	FBgn0025111+FBgn0003360	E009	176.258300135302	0.0140072450761411	57.2712260328214	3.7966937524597e-14	5.7004983759587e-11	15.7453363154864	8.15612049317458	-2.12238613649047	chrX	10782380	10782680	301	-	316	0	0	3595	6	0	2253	FBtr0073424, FBtr0346384, FBtr0073421, FBtr0073423, FBtr0073422
+FBgn0025111+FBgn0003360:E010	FBgn0025111+FBgn0003360	E010	3.76512107787728	1.6130831872072	1.24033810568785	0.265405902564654	NA	1.68455418493543	3.44295065004409	2.07400290277306	chrX	10782777	10782889	113	-	102	0	0	28	0	1	16	FBtr0073424, FBtr0073422
+FBgn0025111+FBgn0003360:E011	FBgn0025111+FBgn0003360	E011	6.5089881698589	1.02475799543533	-0.106580642591283	1	NA	3.07929058112916	2.2118244557951	-0.960549001137653	chrX	10784351	10784458	108	-	31	0	0	111	1	0	76	FBtr0073424, FBtr0073423
+FBgn0025111+FBgn0003360:E012	FBgn0025111+FBgn0003360	E012	22.0575405017202	0.0173479362019806	2.32152361162917	0.127594993875348	1	6.39017502461232	6.6032995198819	0.09815730318011	chrX	10786806	10786907	102	-	197	0	0	317	0	0	285	FBtr0346384, FBtr0073426, FBtr0073421, FBtr0073422
+FBgn0025111+FBgn0003360:E013	FBgn0025111+FBgn0003360	E013	0	NA	NA	NA	NA	NA	NA	NA	chrX	10786908	10786958	51	-	0	0	0	0	0	0	0	FBtr0346384
+FBgn0026562:E001	FBgn0026562	E001	4299.041544073	0.00625342738151494	1.77827176637058	0.182361686845687	1	36.5194509668555	33.7361367094768	-0.435882535950144	chr3R	26869238	26870130	893	-	13627	4	6	84306	135	12	53723	FBtr0334309, FBtr0085094
+FBgn0026562:E002	FBgn0026562	E002	1024.06189804715	0.00560547257675354	0.939414755157941	0.332428397109156	1	24.5398337222753	24.629231616686	0.0155625345990291	chr3R	26870193	26870372	180	-	3692	0	0	18790	21	4	13404	FBtr0334309, FBtr0085094
+FBgn0026562:E003	FBgn0026562	E003	1.92140950784035	1.7015300964077	0.376923806612751	0.539254178375272	NA	1.42457076601046	1.26750401004967	-0.337611245691172	chr3R	26870510	26870567	58	-	5	0	0	52	0	0	18	FBtr0334309
+FBgn0026562:E004	FBgn0026562	E004	306.429541014771	0.00117878749401876	13.995616047042	0.000183237370319748	0.0291517307761014	17.7208290356416	19.0193585523089	0.26135819832111	chr3R	26871926	26871995	70	-	1262	0	0	5769	7	0	3869	FBtr0085094
+FBgn0029167:E001	FBgn0029167	E001	7.15163067280428	0.669259959652248	-0.0392038520963212	1	NA	2.74695890844169	2.58894740553868	-0.172009700200948	chr3L	13846054	13846314	261	+	26	0	0	88	1	0	106	FBtr0075753, FBtr0333020
+FBgn0029167:E002	FBgn0029167	E002	4.72886203814498	1.13843148991516	-0.0386664920562936	1	NA	2.25463356874002	1.97202648887781	-0.3879451959838	chr3L	13846846	13846941	96	+	15	0	0	97	0	0	59	FBtr0075753, FBtr0333020
+FBgn0029167:E003	FBgn0029167	E003	6.69180056772761	0.791436676553325	0.0457459091909556	0.830638349471383	NA	2.67802783517603	2.09420242423742	-0.713077955723428	chr3L	13847022	13847186	165	+	16	0	0	116	1	0	85	FBtr0075753, FBtr0333020
+FBgn0029167:E004	FBgn0029167	E004	1.51828038200073	2.7971496317693	-0.0262292576180982	1	NA	1.30751672622035	0.936837206177554	-0.962975471057744	chr3L	13847248	13847250	3	+	3	0	0	23	0	0	24	FBtr0075753
+FBgn0029167:E005	FBgn0029167	E005	13.7712048894883	0.0102605515544869	2.99771074711222	0.0833822590822143	1	4.69304454778583	3.76317340436349	-0.647111867460705	chr3L	13847251	13847640	390	+	38	0	0	266	0	0	183	FBtr0075753, FBtr0333020
+FBgn0029167:E006	FBgn0029167	E006	6.08105670380655	1.04590312069569	-0.0530718183160417	1	NA	2.5554892382709	1.93358158066203	-0.808193164176312	chr3L	13847698	13847825	128	+	14	0	0	108	0	0	87	FBtr0075753, FBtr0333020
+FBgn0029167:E007	FBgn0029167	E007	4.11795883278261	1.47784545461153	-0.0417356446161534	1	NA	2.10086240357596	1.69907309139862	-0.614406935634533	chr3L	13847882	13847977	96	+	11	0	0	58	0	0	66	FBtr0075753, FBtr0333020
+FBgn0029167:E008	FBgn0029167	E008	8.26926273148314	0.381730230580169	-0.0430019251358402	1	1	3.06855855180953	2.63626248585919	-0.441264390352388	chr3L	13848081	13848278	198	+	24	0	0	172	0	0	103	FBtr0075753, FBtr0333020
+FBgn0029167:E009	FBgn0029167	E009	7.32106279656314	0.275989363694727	-0.0547881477615704	1	NA	2.94167742822873	2.88569868775361	-0.0558507973657094	chr3L	13848391	13848554	164	+	28	0	0	129	0	0	100	FBtr0075753, FBtr0333020
+FBgn0029167:E010	FBgn0029167	E010	7.49234483118778	0.720382621241126	-0.0492371805350444	1	1	2.84552416171752	2.35874079544255	-0.544571326136098	chr3L	13848611	13848768	158	+	21	0	0	194	0	0	74	FBtr0075753, FBtr0333020
+FBgn0029167:E011	FBgn0029167	E011	6.37215955335015	0.94507328288592	-0.0515679140055028	1	NA	2.61873796933053	2.06003019637004	-0.695731913902389	chr3L	13848830	13848984	155	+	16	0	0	153	0	0	70	FBtr0075753, FBtr0333020
+FBgn0029167:E012	FBgn0029167	E012	21.6830099134211	0.00966078697627001	1.93824343342354	0.16385938634027	1	5.75395811447781	4.94217111409413	-0.449800808299567	chr3L	13849050	13849652	603	+	67	0	0	397	0	0	296	FBtr0075753, FBtr0333020
+FBgn0029167:E013	FBgn0029167	E013	38.1261397146271	0.0106708922900478	0.249659521825734	0.617314920670667	1	7.2796145069794	7.00190143589797	-0.117227207675874	chr3L	13849795	13850913	1119	+	143	0	0	773	1	0	458	FBtr0075753, FBtr0333020
+FBgn0029167:E014	FBgn0029167	E014	42.8524424904919	0.00543827199514733	6.39551267918667	0.0114409184566855	0.526612058200166	7.96995708563333	6.61031884758919	-0.564667296958866	chr3L	13850996	13851889	894	+	122	0	0	798	0	0	583	FBtr0075753, FBtr0333020
+FBgn0029167:E015	FBgn0029167	E015	23.4482069573257	0.0206334844386547	0.0214833953053386	0.883469736905202	1	5.64849672651984	5.75176277590517	0.0537623241990586	chr3L	13851942	13852490	549	+	97	0	0	380	1	0	322	FBtr0075753, FBtr0333020
+FBgn0029167:E016	FBgn0029167	E016	64.5965483352241	0.00313770111627804	0.0931354984060562	0.760228232966537	1	9.49701844409952	9.52361538944403	0.00870241789730741	chr3L	13852567	13853889	1323	+	266	0	0	1157	4	0	816	FBtr0075753, FBtr0333020
+FBgn0029167:E017	FBgn0029167	E017	6.34418701479621	0.641687458102554	-0.0279983220690525	1	NA	2.631019849614	2.51683050848261	-0.128774450056878	chr3L	13853954	13854032	79	+	24	0	0	123	0	0	81	FBtr0075753, FBtr0333020
+FBgn0029167:E018	FBgn0029167	E018	13.6282428973941	0.0568553712322375	-0.0220266679541936	1	1	4.21980985487832	4.27256434360482	0.0364161128593739	chr3L	13854094	13854343	250	+	55	0	0	300	1	0	142	FBtr0075753, FBtr0333020
+FBgn0029167:E019	FBgn0029167	E019	37.0046496217164	0.0542796741127381	0.0120575405903054	0.912562571807181	1	6.45980457475192	6.82433641489946	0.164504372273914	chr3L	13854397	13855144	748	+	166	0	0	848	2	0	369	FBtr0075753, FBtr0333020
+FBgn0029167:E020	FBgn0029167	E020	27.4137663696225	0.0140808279405315	-0.000645266196897865	1	1	6.20312661180806	6.19298560590549	-0.00487967433429848	chr3L	13855205	13855690	486	+	111	0	0	556	1	0	322	FBtr0075753, FBtr0333020
+FBgn0029167:E021	FBgn0029167	E021	32.1379252991209	0.00539675007684137	0.00492384222850717	0.944058276390426	1	6.95596234560479	6.88173172555779	-0.0322516973240479	chr3L	13855751	13856257	507	+	133	0	0	621	0	0	406	FBtr0075753, FBtr0333020
+FBgn0029167:E022	FBgn0029167	E022	27.3509370832817	0.00993603693603888	0.17967276873685	0.671654608829781	1	6.27650481720362	6.48033741394852	0.0954967805269895	chr3L	13856322	13856805	484	+	120	0	0	537	1	0	326	FBtr0075753, FBtr0333020
+FBgn0029167:E023	FBgn0029167	E023	101.035151613508	0.00177812207833575	14.0268160910829	0.000180222035480899	0.0289097919874621	11.6190732557024	12.8612780874803	0.330745581476522	chr3L	13856870	13858647	1778	+	516	0	2	1817	2	0	1247	FBtr0075753, FBtr0333020
+FBgn0029167:E024	FBgn0029167	E024	18.8267081738284	0.00869743425143979	0.00731653589360803	0.931834678880136	1	5.36739732096657	5.31935346395099	-0.0265929226251549	chr3L	13858706	13858918	213	+	78	0	0	344	0	0	248	FBtr0075753, FBtr0333020
+FBgn0029167:E025	FBgn0029167	E025	37.796323158661	0.0335859452198008	0.51510201871362	0.472938533019722	1	6.63644865523637	7.10891029211558	0.206620684619216	chr3L	13858980	13859435	456	+	159	1	1	577	1	0	515	FBtr0075753, FBtr0333020
+FBgn0029167:E026	FBgn0029167	E026	21.009339514042	0.129683212399378	0.168415275969721	0.681524059333513	1	4.76508364271823	4.96385629677031	0.120367521774135	chr3L	13859492	13859748	257	+	83	0	1	266	1	0	313	FBtr0075753, FBtr0333020
+FBgn0029167:E027	FBgn0029167	E027	9.6365749241799	0.217580038761964	-0.0465416621519523	1	1	3.3273311611661	3.30296961506368	-0.0214084419953458	chr3L	13859806	13860001	196	+	37	0	0	140	1	0	135	FBtr0075753, FBtr0333020
+FBgn0034736:E001	FBgn0034736	E001	3.35726224343748	1.78484609963224	0.268679246157262	0.604219124146927	NA	1.44361199055548	2.21473519225744	1.23848594116766	chr2R	22550094	22550254	161	+	4	0	1	43	2	0	20	FBtr0071835
+FBgn0034736:E002	FBgn0034736	E002	31.3649392872418	1.50587689589588	0.287018839493982	0.592137292181566	1	4.7447147855441	3.49771820140553	-0.892839406307894	chr2R	22550320	22552113	1794	+	46	0	0	699	1	0	376	FBtr0071835
+FBgn0035085:E001	FBgn0035085	E001	38.523896467404	0.0671387752777912	0.440517347408175	0.506872859456901	1	6.19767057212486	5.74358383814322	-0.226399041442039	chr2R	24945139	24945664	526	+	96	0	0	831	0	0	472	FBtr0072393
+FBgn0035085:E002	FBgn0035085	E002	42.995726265042	0.048346362505174	0.153957099144804	0.694782135628495	1	6.54983495413991	6.64051219180657	0.0411807158685003	chr2R	24945665	24946163	499	+	124	1	0	650	0	0	648	FBtr0343502, FBtr0072393
+FBgn0035085:E003	FBgn0035085	E003	11.1822437908847	0.0252060599737455	0.0528031250827325	0.818255495082344	1	3.84382409807619	3.49576280275657	-0.277109497996343	chr2R	24946219	24946332	114	+	29	0	0	182	0	0	167	FBtr0343502, FBtr0072393
+FBgn0035085:E004	FBgn0035085	E004	9.11680909423206	0.0171459496586942	2.87479161509771	0.089976621379389	1	3.49964436083669	4.05326145311063	0.429051408269815	chr2R	24946383	24946636	254	+	39	0	0	154	0	0	126	FBtr0343502, FBtr0072393
+FBgn0039155:E001	FBgn0039155	E001	13.6712498657309	0.0463065083220391	0.120585595374735	0.72840023002436	1	2.82584300462209	3.05455255454249	0.226266381188417	chr3R	24141395	24141660	266	+	10	0	0	316	0	0	168	FBtr0084549
+FBgn0039155:E002	FBgn0039155	E002	42.7015734776506	0.0168969994681728	0.167642564676271	0.682215489960084	1	4.90177560166337	5.15884080320152	0.150757731546162	chr3R	24145193	24145870	678	+	29	0	0	750	0	0	648	FBtr0084549
+FBgn0039155:E003	FBgn0039155	E003	9.59400268282558	0.106779096337916	0.908702915845097	0.340458807683609	1	2.295297222532	1.37949280433586	-1.47336111077149	chr3R	24145930	24146048	119	+	2	0	0	135	0	0	165	FBtr0084549
+FBgn0039155:E004	FBgn0039155	E004	21.818733441502	0.0102195118081709	0.346088392922738	0.556335792123203	1	3.72178079518322	3.23201345868211	-0.411439521105551	chr3R	24146109	24146302	194	+	11	0	0	389	1	0	318	FBtr0084549
+FBgn0039155:E005	FBgn0039155	E005	33.6638874829461	0.0192821592660858	1.63087827191582	0.201581614240006	1	4.34400029242237	3.65686503916905	-0.503801897354084	chr3R	24146366	24146739	374	+	13	1	0	682	2	0	431	FBtr0084549
+FBgn0039155:E006	FBgn0039155	E006	6.29083274168577	0.0252516535063752	3.7437428395564	0.0530055867882575	NA	1.95416666238726	2.78389648685824	1.02609607038693	chr3R	24146801	24146867	67	+	7	1	0	113	0	0	79	FBtr0084549
+FBgn0039155:E007	FBgn0039155	E007	12.3243820234843	0.0262778274885892	2.13624519448128	0.143853608869934	1	2.67736324784513	3.39457417755365	0.690361764818206	chr3R	24147196	24147490	295	+	11	1	0	238	0	1	147	FBtr0084549
+FBgn0039827:E001	FBgn0039827	E001	2.63498804451882	0.0608176505616557	0.414823799440974	0.519531233750519	NA	1.59698175719074	1.14605646107818	-0.958911104309699	chr3R	31196916	31197135	220	+	2	0	0	48	0	0	39	FBtr0085755
+FBgn0039827:E002	FBgn0039827	E002	2.05937277346515	1.77137857854951	0.458134137387447	0.498497279931254	NA	1.19223115015567	0.0433668339050932	-9.56366021393415	chr3R	31199171	31199288	118	+	0	0	0	36	0	0	32	FBtr0085755
+FBgn0039827:E003	FBgn0039827	E003	1.93543290374953	0.123855592007312	0.400739231241019	0.526707733863682	NA	1.35176238289198	0.81056910682808	-1.47715610462916	chr3R	31199457	31199634	178	+	1	0	0	35	0	0	29	FBtr0085755
+FBgn0039827:E004	FBgn0039827	E004	3.28985825548349	0.0893690013877094	1.3505968811039	0.245173796359894	NA	1.58175203407803	2.19601130375313	0.949671751426194	chr3R	31199721	31199940	220	+	6	0	1	59	0	0	33	FBtr0085755
+FBgn0039827:E005	FBgn0039827	E005	3.71984502435892	0.105905873684463	0.107135509118166	0.743429186401977	NA	1.7435517258432	1.60688982797305	-0.236098009333743	chr3R	31200404	31200565	162	+	4	0	0	65	1	0	44	FBtr0085755
+FBgn0039827:E006	FBgn0039827	E006	1.49855059052996	0.142636861571954	0.251438625597252	0.616063913732651	NA	1.17582262214242	1.39184890589876	0.487369179091324	chr3R	31200909	31200982	74	+	3	0	0	24	0	0	23	FBtr0085755
+FBgn0039827:E007	FBgn0039827	E007	9.62489678410572	0.0167104742226843	0.0291662271828628	0.864395791606263	1	2.95394188431291	2.81385568422878	-0.141211731937923	chr3R	31201059	31201820	762	+	11	1	0	175	0	0	127	FBtr0085755
+FBgn0039827:E008	FBgn0039827	E008	8.16018283400104	0.0168806044751327	1.4042102686353	0.236019904522537	1	2.69695467533777	3.13897231666437	0.44119600007341	chr3R	31201881	31202298	418	+	14	0	1	142	0	0	106	FBtr0085755
+FBgn0039827:E009	FBgn0039827	E009	6.36726616885434	0.024157041511076	1.69280647573429	0.193231426709786	NA	2.48935040136838	1.81054974057187	-0.922389941550072	chr3R	31202355	31202678	324	+	5	0	0	126	0	0	89	FBtr0085755
+FBgn0039827:E010	FBgn0039827	E010	3.61313432079147	0.0615567372635995	0.118050038473861	0.731159078754113	NA	1.82539909664026	1.96967561924679	0.220187796338587	chr3R	31203048	31203236	189	+	6	0	0	56	0	0	57	FBtr0085755
+FBgn0039827:E011	FBgn0039827	E011	1.99064386054588	0.100802457520676	0.320881415004813	0.571078427721341	NA	1.35667514561751	1.60773535197048	0.490854902982875	chr3R	31203372	31203457	86	+	4	0	0	31	0	0	31	FBtr0085755
+FBgn0039827:E012	FBgn0039827	E012	2.19810573129925	0.0718896852308745	0.192314515449624	0.660997207527994	NA	1.44207416809348	1.61260405533928	0.323155632427585	chr3R	31203542	31203722	181	+	4	0	0	37	0	0	33	FBtr0085755
+FBgn0264475:E001	FBgn0264475	E001	109.782378649456	NA	NA	NA	NA	NA	NA	NA	chr3L	820759	821512	754	+	348	1	0	1911	4	0	1484	FBtr0332751