Mercurial > repos > iuc > delly_call

comparison test-data/call_2.vcf.gz @ 0:36772204dee5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit 86ada42b811af0262618636f2d8d1788274f9884"
author iuc
date Mon, 28 Sep 2020 07:45:21 +0000
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-1:000000000000 0:36772204dee5
1 ##fileformat=VCFv4.2
2 ##FILTER=<ID=PASS,Description="All filters passed">
3 ##fileDate=20200728
4 ##ALT=<ID=DEL,Description="Deletion">
5 ##ALT=<ID=DUP,Description="Duplication">
6 ##ALT=<ID=INV,Description="Inversion">
7 ##ALT=<ID=BND,Description="Translocation">
8 ##ALT=<ID=INS,Description="Insertion">
9 ##FILTER=<ID=LowQual,Description="Poor quality and insufficient number of PEs and SRs.">
10 ##INFO=<ID=CIEND,Number=2,Type=Integer,Description="PE confidence interval around END">
11 ##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="PE confidence interval around POS">
12 ##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for POS2 coordinate in case of an inter-chromosomal translocation">
13 ##INFO=<ID=POS2,Number=1,Type=Integer,Description="Genomic position for CHR2 in case of an inter-chromosomal translocation">
14 ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
15 ##INFO=<ID=PE,Number=1,Type=Integer,Description="Paired-end support of the structural variant">
16 ##INFO=<ID=MAPQ,Number=1,Type=Integer,Description="Median mapping quality of paired-ends">
17 ##INFO=<ID=SRMAPQ,Number=1,Type=Integer,Description="Median mapping quality of split-reads">
18 ##INFO=<ID=SR,Number=1,Type=Integer,Description="Split-read support">
19 ##INFO=<ID=SRQ,Number=1,Type=Float,Description="Split-read consensus alignment quality">
20 ##INFO=<ID=CONSENSUS,Number=1,Type=String,Description="Split-read consensus sequence">
21 ##INFO=<ID=CE,Number=1,Type=Float,Description="Consensus sequence entropy">
22 ##INFO=<ID=CT,Number=1,Type=String,Description="Paired-end signature induced connection type">
23 ##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Insertion length for SVTYPE=INS.">
24 ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
25 ##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
26 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
27 ##INFO=<ID=SVMETHOD,Number=1,Type=String,Description="Type of approach used to detect SV">
28 ##INFO=<ID=INSLEN,Number=1,Type=Integer,Description="Predicted length of the insertion">
29 ##INFO=<ID=HOMLEN,Number=1,Type=Integer,Description="Predicted microhomology length using a max. edit distance of 2">
30 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
31 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Log10-scaled genotype likelihoods for RR,RA,AA genotypes">
32 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
33 ##FORMAT=<ID=FT,Number=1,Type=String,Description="Per-sample genotype filter">
34 ##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the SV">
35 ##FORMAT=<ID=RCL,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the left control region">
36 ##FORMAT=<ID=RCR,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the right control region">
37 ##FORMAT=<ID=CN,Number=1,Type=Integer,Description="Read-depth based copy-number estimate for autosomal sites">
38 ##FORMAT=<ID=DR,Number=1,Type=Integer,Description="# high-quality reference pairs">
39 ##FORMAT=<ID=DV,Number=1,Type=Integer,Description="# high-quality variant pairs">
40 ##FORMAT=<ID=RR,Number=1,Type=Integer,Description="# high-quality reference junction reads">
41 ##FORMAT=<ID=RV,Number=1,Type=Integer,Description="# high-quality variant junction reads">
42 ##reference=../data/v4/genome.fasta
43 ##contig=<ID=chr16,length=10000000>
44 ##bcftools_viewVersion=1.10.2+htslib-1.10.2
45 ##bcftools_viewCommand=view -Ov call_2.bcf.gz; Date=Sun Sep 27 02:27:49 2020
46 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT normal
47 chr16 825909 DEL00000000 T <DEL> 173 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=827789;PE=5;MAPQ=37;CT=3to5;CIPOS=-125,125;CIEND=-125,125 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
48 chr16 850905 DEL00000001 G <DEL> 247 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=855131;PE=7;MAPQ=37;CT=3to5;CIPOS=-119,119;CIEND=-119,119 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
49 chr16 1177241 DEL00000002 T <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1178921;PE=3;MAPQ=37;CT=3to5;CIPOS=-177,177;CIEND=-177,177 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
50 chr16 1477778 DEL00000003 C <DEL> 74 LowQual IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1482173;PE=2;MAPQ=37;CT=3to5;CIPOS=-189,189;CIEND=-189,189 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
51 chr16 1515871 DEL00000004 A <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1520228;PE=4;MAPQ=37;CT=3to5;CIPOS=-122,122;CIEND=-122,122 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
52 chr16 1541592 DEL00000005 T <DEL> 259 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1542580;PE=7;MAPQ=37;CT=3to5;CIPOS=-71,71;CIEND=-71,71 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
53 chr16 2403786 DEL00000006 T <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2408122;PE=5;MAPQ=37;CT=3to5;CIPOS=-97,97;CIEND=-97,97 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
54 chr16 2434561 DEL00000007 A <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2439435;PE=4;MAPQ=37;CT=3to5;CIPOS=-112,112;CIEND=-112,112 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
55 chr16 2582432 DEL00000008 A <DEL> 284 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2586962;PE=8;MAPQ=37;CT=3to5;CIPOS=-70,70;CIEND=-70,70 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
56 chr16 2844663 DEL00000009 C <DEL> 296 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2846416;PE=8;MAPQ=37;CT=3to5;CIPOS=-100,100;CIEND=-100,100 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
57 chr16 2979587 DEL00000010 G <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2980899;PE=5;MAPQ=37;CT=3to5;CIPOS=-99,99;CIEND=-99,99 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
58 chr16 3014404 DEL00000011 A <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3017741;PE=6;MAPQ=37;CT=3to5;CIPOS=-82,82;CIEND=-82,82 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
59 chr16 3039934 DEL00000012 C <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3041007;PE=5;MAPQ=37;CT=3to5;CIPOS=-171,171;CIEND=-171,171 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
60 chr16 3049108 DEL00000013 C <DEL> 259 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3049850;PE=7;MAPQ=37;CT=3to5;CIPOS=-111,111;CIEND=-111,111 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
61 chr16 3278470 DEL00000014 T <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3280840;PE=4;MAPQ=37;CT=3to5;CIPOS=-110,110;CIEND=-110,110 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
62 chr16 3297293 DEL00000015 A <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3301472;PE=4;MAPQ=37;CT=3to5;CIPOS=-67,67;CIEND=-67,67 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
63 chr16 3447681 DEL00000016 A <DEL> 46 LowQual IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3451639;PE=2;MAPQ=23;CT=3to5;CIPOS=-237,237;CIEND=-237,237 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
64 chr16 4038286 DEL00000017 A <DEL> 46 LowQual IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4039676;PE=2;MAPQ=23;CT=3to5;CIPOS=-210,210;CIEND=-210,210 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
65 chr16 4097148 DEL00000018 A <DEL> 62 LowQual IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4101557;PE=2;MAPQ=37;CT=3to5;CIPOS=-141,141;CIEND=-141,141 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
66 chr16 4139307 DEL00000019 T <DEL> 74 LowQual IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4141836;PE=2;MAPQ=37;CT=3to5;CIPOS=-133,133;CIEND=-133,133 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
67 chr16 4174965 DEL00000020 T <DEL> 171 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4179470;PE=5;MAPQ=37;CT=3to5;CIPOS=-120,120;CIEND=-120,120 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
68 chr16 4434261 DEL00000021 A <DEL> 210 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4438571;PE=6;MAPQ=37;CT=3to5;CIPOS=-85,85;CIEND=-85,85 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
69 chr16 4576771 DEL00000022 T <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4578602;PE=5;MAPQ=37;CT=3to5;CIPOS=-81,81;CIEND=-81,81 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
70 chr16 4587255 DEL00000023 A <DEL> 370 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4590513;PE=10;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
71 chr16 4594048 DEL00000024 T <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4599030;PE=3;MAPQ=37;CT=3to5;CIPOS=-129,129;CIEND=-129,129 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
72 chr16 4745978 DEL00000025 T <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4749430;PE=3;MAPQ=37;CT=3to5;CIPOS=-186,186;CIEND=-186,186 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
73 chr16 4771579 DEL00000026 A <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4774817;PE=4;MAPQ=37;CT=3to5;CIPOS=-166,166;CIEND=-166,166 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
74 chr16 4986942 DEL00000027 T <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4988061;PE=5;MAPQ=37;CT=3to5;CIPOS=-173,173;CIEND=-173,173 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
75 chr16 5038084 DEL00000028 A <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5041782;PE=3;MAPQ=37;CT=3to5;CIPOS=-165,165;CIEND=-165,165 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
76 chr16 5255973 DEL00000029 A <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5259495;PE=4;MAPQ=37;CT=3to5;CIPOS=-120,120;CIEND=-120,120 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
77 chr16 5270064 DEL00000030 G <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5274277;PE=4;MAPQ=37;CT=3to5;CIPOS=-175,175;CIEND=-175,175 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
78 chr16 5300777 DEL00000031 T <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5304511;PE=6;MAPQ=37;CT=3to5;CIPOS=-97,97;CIEND=-97,97 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
79 chr16 5683371 DEL00000032 T <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5684564;PE=5;MAPQ=37;CT=3to5;CIPOS=-150,150;CIEND=-150,150 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
80 chr16 5749292 DEL00000033 G <DEL> 69 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5754058;PE=3;MAPQ=23;CT=3to5;CIPOS=-189,189;CIEND=-189,189 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
81 chr16 5853119 DEL00000034 T <DEL> 69 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5854135;PE=3;MAPQ=23;CT=3to5;CIPOS=-160,160;CIEND=-160,160 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
82 chr16 5993608 DEL00000035 C <DEL> 247 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5997715;PE=7;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
83 chr16 6233812 DEL00000036 G <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6234827;PE=6;MAPQ=37;CT=3to5;CIPOS=-137,137;CIEND=-137,137 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
84 chr16 6268528 DEL00000037 T <DEL> 333 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6269313;PE=9;MAPQ=37;CT=3to5;CIPOS=-84,84;CIEND=-84,84 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
85 chr16 6285559 DEL00000038 A <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6288501;PE=3;MAPQ=37;CT=3to5;CIPOS=-198,198;CIEND=-198,198 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
86 chr16 6309245 DEL00000039 T <DEL> 333 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6313800;PE=9;MAPQ=37;CT=3to5;CIPOS=-98,98;CIEND=-98,98 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
87 chr16 6410877 DEL00000040 G <DEL> 370 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6413829;PE=10;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
88 chr16 6820642 DEL00000041 T <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6825570;PE=3;MAPQ=37;CT=3to5;CIPOS=-157,157;CIEND=-157,157 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
89 chr16 6905368 DEL00000042 A <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6909093;PE=6;MAPQ=37;CT=3to5;CIPOS=-110,110;CIEND=-110,110 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
90 chr16 7234607 DEL00000043 C <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7235889;PE=6;MAPQ=37;CT=3to5;CIPOS=-97,97;CIEND=-97,97 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
91 chr16 7394046 DEL00000044 A <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7397480;PE=5;MAPQ=37;CT=3to5;CIPOS=-137,137;CIEND=-137,137 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
92 chr16 7519284 DEL00000045 G <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7522345;PE=6;MAPQ=37;CT=3to5;CIPOS=-95,95;CIEND=-95,95 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
93 chr16 7527833 DEL00000046 C <DEL> 259 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7532827;PE=7;MAPQ=37;CT=3to5;CIPOS=-61,61;CIEND=-61,61 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
94 chr16 7906163 DEL00000047 C <DEL> 115 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7906861;PE=5;MAPQ=23;CT=3to5;CIPOS=-132,132;CIEND=-132,132 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
95 chr16 7998010 DEL00000048 A <DEL> 223 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8001533;PE=7;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
96 chr16 8004170 DEL00000049 T <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8008183;PE=4;MAPQ=37;CT=3to5;CIPOS=-112,112;CIEND=-112,112 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
97 chr16 8063189 DEL00000050 C <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8064849;PE=4;MAPQ=37;CT=3to5;CIPOS=-187,187;CIEND=-187,187 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
98 chr16 8264688 DEL00000051 C <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8266131;PE=6;MAPQ=37;CT=3to5;CIPOS=-86,86;CIEND=-86,86 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
99 chr16 8282480 DEL00000052 A <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8285481;PE=5;MAPQ=37;CT=3to5;CIPOS=-106,106;CIEND=-106,106 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
100 chr16 8347101 DEL00000053 C <DEL> 259 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8351327;PE=7;MAPQ=37;CT=3to5;CIPOS=-63,63;CIEND=-63,63 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
101 chr16 8387696 DEL00000054 A <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8392116;PE=4;MAPQ=37;CT=3to5;CIPOS=-99,99;CIEND=-99,99 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
102 chr16 8405853 DEL00000055 C <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8410818;PE=3;MAPQ=37;CT=3to5;CIPOS=-76,76;CIEND=-76,76 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
103 chr16 8507352 DEL00000056 A <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8508193;PE=5;MAPQ=37;CT=3to5;CIPOS=-121,121;CIEND=-121,121 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
104 chr16 8540750 DEL00000057 T <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8544830;PE=4;MAPQ=37;CT=3to5;CIPOS=-181,181;CIEND=-181,181 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
105 chr16 8607361 DEL00000058 A <DEL> 222 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8608882;PE=6;MAPQ=37;CT=3to5;CIPOS=-68,68;CIEND=-68,68 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
106 chr16 8681669 DEL00000059 C <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8685132;PE=4;MAPQ=37;CT=3to5;CIPOS=-74,74;CIEND=-74,74 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
107 chr16 8824490 DEL00000060 G <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8826563;PE=3;MAPQ=37;CT=3to5;CIPOS=-60,60;CIEND=-60,60 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
108 chr16 8923597 DEL00000061 C <DEL> 134 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8926010;PE=4;MAPQ=37;CT=3to5;CIPOS=-156,156;CIEND=-156,156 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
109 chr16 9090265 DEL00000062 C <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9093228;PE=4;MAPQ=37;CT=3to5;CIPOS=-128,128;CIEND=-128,128 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
110 chr16 9119366 DEL00000063 T <DEL> 74 LowQual IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9123335;PE=2;MAPQ=37;CT=3to5;CIPOS=-140,140;CIEND=-140,140 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
111 chr16 9178997 DEL00000064 T <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9182500;PE=5;MAPQ=37;CT=3to5;CIPOS=-66,66;CIEND=-66,66 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
112 chr16 9226404 DEL00000065 T <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9227636;PE=3;MAPQ=37;CT=3to5;CIPOS=-127,127;CIEND=-127,127 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
113 chr16 9319688 DEL00000066 C <DEL> 111 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9320353;PE=3;MAPQ=37;CT=3to5;CIPOS=-133,133;CIEND=-133,133 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
114 chr16 9359380 DEL00000067 A <DEL> 333 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9361199;PE=9;MAPQ=37;CT=3to5;CIPOS=-80,80;CIEND=-80,80 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
115 chr16 9501567 DEL00000068 G <DEL> 247 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9504493;PE=7;MAPQ=37;CT=3to5;CIPOS=-62,62;CIEND=-62,62 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
116 chr16 9596261 DEL00000069 A <DEL> 370 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9599737;PE=10;MAPQ=37;CT=3to5;CIPOS=-64,64;CIEND=-64,64 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
117 chr16 9670189 DEL00000070 A <DEL> 185 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9673420;PE=5;MAPQ=37;CT=3to5;CIPOS=-145,145;CIEND=-145,145 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
118 chr16 9721367 DEL00000071 T <DEL> 370 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9723693;PE=10;MAPQ=37;CT=3to5;CIPOS=-62,62;CIEND=-62,62 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
119 chr16 9754516 DEL00000072 T <DEL> 284 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9757726;PE=8;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
120 chr16 9894428 DEL00000073 T <DEL> 148 PASS IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9898668;PE=4;MAPQ=37;CT=3to5;CIPOS=-91,91;CIEND=-91,91 GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV ./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0