view test-data/call_2.vcf.gz @ 4:c34eab9d5134 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit 57b50253f326baf18bfbf417d8c788b4f5ba66e6
author iuc
date Mon, 27 Jun 2022 18:17:19 +0000
parents 36772204dee5
children
line wrap: on
line source

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##fileDate=20200728
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=BND,Description="Translocation">
##ALT=<ID=INS,Description="Insertion">
##FILTER=<ID=LowQual,Description="Poor quality and insufficient number of PEs and SRs.">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="PE confidence interval around END">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="PE confidence interval around POS">
##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for POS2 coordinate in case of an inter-chromosomal translocation">
##INFO=<ID=POS2,Number=1,Type=Integer,Description="Genomic position for CHR2 in case of an inter-chromosomal translocation">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
##INFO=<ID=PE,Number=1,Type=Integer,Description="Paired-end support of the structural variant">
##INFO=<ID=MAPQ,Number=1,Type=Integer,Description="Median mapping quality of paired-ends">
##INFO=<ID=SRMAPQ,Number=1,Type=Integer,Description="Median mapping quality of split-reads">
##INFO=<ID=SR,Number=1,Type=Integer,Description="Split-read support">
##INFO=<ID=SRQ,Number=1,Type=Float,Description="Split-read consensus alignment quality">
##INFO=<ID=CONSENSUS,Number=1,Type=String,Description="Split-read consensus sequence">
##INFO=<ID=CE,Number=1,Type=Float,Description="Consensus sequence entropy">
##INFO=<ID=CT,Number=1,Type=String,Description="Paired-end signature induced connection type">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Insertion length for SVTYPE=INS.">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVMETHOD,Number=1,Type=String,Description="Type of approach used to detect SV">
##INFO=<ID=INSLEN,Number=1,Type=Integer,Description="Predicted length of the insertion">
##INFO=<ID=HOMLEN,Number=1,Type=Integer,Description="Predicted microhomology length using a max. edit distance of 2">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Log10-scaled genotype likelihoods for RR,RA,AA genotypes">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=FT,Number=1,Type=String,Description="Per-sample genotype filter">
##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the SV">
##FORMAT=<ID=RCL,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the left control region">
##FORMAT=<ID=RCR,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the right control region">
##FORMAT=<ID=CN,Number=1,Type=Integer,Description="Read-depth based copy-number estimate for autosomal sites">
##FORMAT=<ID=DR,Number=1,Type=Integer,Description="# high-quality reference pairs">
##FORMAT=<ID=DV,Number=1,Type=Integer,Description="# high-quality variant pairs">
##FORMAT=<ID=RR,Number=1,Type=Integer,Description="# high-quality reference junction reads">
##FORMAT=<ID=RV,Number=1,Type=Integer,Description="# high-quality variant junction reads">
##reference=../data/v4/genome.fasta
##contig=<ID=chr16,length=10000000>
##bcftools_viewVersion=1.10.2+htslib-1.10.2
##bcftools_viewCommand=view -Ov call_2.bcf.gz; Date=Sun Sep 27 02:27:49 2020
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	normal
chr16	825909	DEL00000000	T	<DEL>	173	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=827789;PE=5;MAPQ=37;CT=3to5;CIPOS=-125,125;CIEND=-125,125	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	850905	DEL00000001	G	<DEL>	247	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=855131;PE=7;MAPQ=37;CT=3to5;CIPOS=-119,119;CIEND=-119,119	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	1177241	DEL00000002	T	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1178921;PE=3;MAPQ=37;CT=3to5;CIPOS=-177,177;CIEND=-177,177	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	1477778	DEL00000003	C	<DEL>	74	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1482173;PE=2;MAPQ=37;CT=3to5;CIPOS=-189,189;CIEND=-189,189	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	1515871	DEL00000004	A	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1520228;PE=4;MAPQ=37;CT=3to5;CIPOS=-122,122;CIEND=-122,122	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	1541592	DEL00000005	T	<DEL>	259	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=1542580;PE=7;MAPQ=37;CT=3to5;CIPOS=-71,71;CIEND=-71,71	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	2403786	DEL00000006	T	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2408122;PE=5;MAPQ=37;CT=3to5;CIPOS=-97,97;CIEND=-97,97	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	2434561	DEL00000007	A	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2439435;PE=4;MAPQ=37;CT=3to5;CIPOS=-112,112;CIEND=-112,112	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	2582432	DEL00000008	A	<DEL>	284	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2586962;PE=8;MAPQ=37;CT=3to5;CIPOS=-70,70;CIEND=-70,70	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	2844663	DEL00000009	C	<DEL>	296	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2846416;PE=8;MAPQ=37;CT=3to5;CIPOS=-100,100;CIEND=-100,100	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	2979587	DEL00000010	G	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=2980899;PE=5;MAPQ=37;CT=3to5;CIPOS=-99,99;CIEND=-99,99	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	3014404	DEL00000011	A	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3017741;PE=6;MAPQ=37;CT=3to5;CIPOS=-82,82;CIEND=-82,82	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	3039934	DEL00000012	C	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3041007;PE=5;MAPQ=37;CT=3to5;CIPOS=-171,171;CIEND=-171,171	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	3049108	DEL00000013	C	<DEL>	259	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3049850;PE=7;MAPQ=37;CT=3to5;CIPOS=-111,111;CIEND=-111,111	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	3278470	DEL00000014	T	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3280840;PE=4;MAPQ=37;CT=3to5;CIPOS=-110,110;CIEND=-110,110	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	3297293	DEL00000015	A	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3301472;PE=4;MAPQ=37;CT=3to5;CIPOS=-67,67;CIEND=-67,67	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	3447681	DEL00000016	A	<DEL>	46	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=3451639;PE=2;MAPQ=23;CT=3to5;CIPOS=-237,237;CIEND=-237,237	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4038286	DEL00000017	A	<DEL>	46	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4039676;PE=2;MAPQ=23;CT=3to5;CIPOS=-210,210;CIEND=-210,210	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4097148	DEL00000018	A	<DEL>	62	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4101557;PE=2;MAPQ=37;CT=3to5;CIPOS=-141,141;CIEND=-141,141	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4139307	DEL00000019	T	<DEL>	74	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4141836;PE=2;MAPQ=37;CT=3to5;CIPOS=-133,133;CIEND=-133,133	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4174965	DEL00000020	T	<DEL>	171	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4179470;PE=5;MAPQ=37;CT=3to5;CIPOS=-120,120;CIEND=-120,120	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4434261	DEL00000021	A	<DEL>	210	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4438571;PE=6;MAPQ=37;CT=3to5;CIPOS=-85,85;CIEND=-85,85	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4576771	DEL00000022	T	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4578602;PE=5;MAPQ=37;CT=3to5;CIPOS=-81,81;CIEND=-81,81	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4587255	DEL00000023	A	<DEL>	370	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4590513;PE=10;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4594048	DEL00000024	T	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4599030;PE=3;MAPQ=37;CT=3to5;CIPOS=-129,129;CIEND=-129,129	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4745978	DEL00000025	T	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4749430;PE=3;MAPQ=37;CT=3to5;CIPOS=-186,186;CIEND=-186,186	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4771579	DEL00000026	A	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4774817;PE=4;MAPQ=37;CT=3to5;CIPOS=-166,166;CIEND=-166,166	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	4986942	DEL00000027	T	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=4988061;PE=5;MAPQ=37;CT=3to5;CIPOS=-173,173;CIEND=-173,173	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5038084	DEL00000028	A	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5041782;PE=3;MAPQ=37;CT=3to5;CIPOS=-165,165;CIEND=-165,165	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5255973	DEL00000029	A	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5259495;PE=4;MAPQ=37;CT=3to5;CIPOS=-120,120;CIEND=-120,120	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5270064	DEL00000030	G	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5274277;PE=4;MAPQ=37;CT=3to5;CIPOS=-175,175;CIEND=-175,175	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5300777	DEL00000031	T	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5304511;PE=6;MAPQ=37;CT=3to5;CIPOS=-97,97;CIEND=-97,97	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5683371	DEL00000032	T	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5684564;PE=5;MAPQ=37;CT=3to5;CIPOS=-150,150;CIEND=-150,150	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5749292	DEL00000033	G	<DEL>	69	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5754058;PE=3;MAPQ=23;CT=3to5;CIPOS=-189,189;CIEND=-189,189	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5853119	DEL00000034	T	<DEL>	69	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5854135;PE=3;MAPQ=23;CT=3to5;CIPOS=-160,160;CIEND=-160,160	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	5993608	DEL00000035	C	<DEL>	247	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=5997715;PE=7;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	6233812	DEL00000036	G	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6234827;PE=6;MAPQ=37;CT=3to5;CIPOS=-137,137;CIEND=-137,137	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	6268528	DEL00000037	T	<DEL>	333	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6269313;PE=9;MAPQ=37;CT=3to5;CIPOS=-84,84;CIEND=-84,84	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	6285559	DEL00000038	A	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6288501;PE=3;MAPQ=37;CT=3to5;CIPOS=-198,198;CIEND=-198,198	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	6309245	DEL00000039	T	<DEL>	333	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6313800;PE=9;MAPQ=37;CT=3to5;CIPOS=-98,98;CIEND=-98,98	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	6410877	DEL00000040	G	<DEL>	370	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6413829;PE=10;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	6820642	DEL00000041	T	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6825570;PE=3;MAPQ=37;CT=3to5;CIPOS=-157,157;CIEND=-157,157	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	6905368	DEL00000042	A	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=6909093;PE=6;MAPQ=37;CT=3to5;CIPOS=-110,110;CIEND=-110,110	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	7234607	DEL00000043	C	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7235889;PE=6;MAPQ=37;CT=3to5;CIPOS=-97,97;CIEND=-97,97	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	7394046	DEL00000044	A	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7397480;PE=5;MAPQ=37;CT=3to5;CIPOS=-137,137;CIEND=-137,137	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	7519284	DEL00000045	G	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7522345;PE=6;MAPQ=37;CT=3to5;CIPOS=-95,95;CIEND=-95,95	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	7527833	DEL00000046	C	<DEL>	259	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7532827;PE=7;MAPQ=37;CT=3to5;CIPOS=-61,61;CIEND=-61,61	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	7906163	DEL00000047	C	<DEL>	115	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=7906861;PE=5;MAPQ=23;CT=3to5;CIPOS=-132,132;CIEND=-132,132	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	7998010	DEL00000048	A	<DEL>	223	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8001533;PE=7;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8004170	DEL00000049	T	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8008183;PE=4;MAPQ=37;CT=3to5;CIPOS=-112,112;CIEND=-112,112	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8063189	DEL00000050	C	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8064849;PE=4;MAPQ=37;CT=3to5;CIPOS=-187,187;CIEND=-187,187	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8264688	DEL00000051	C	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8266131;PE=6;MAPQ=37;CT=3to5;CIPOS=-86,86;CIEND=-86,86	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8282480	DEL00000052	A	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8285481;PE=5;MAPQ=37;CT=3to5;CIPOS=-106,106;CIEND=-106,106	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8347101	DEL00000053	C	<DEL>	259	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8351327;PE=7;MAPQ=37;CT=3to5;CIPOS=-63,63;CIEND=-63,63	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8387696	DEL00000054	A	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8392116;PE=4;MAPQ=37;CT=3to5;CIPOS=-99,99;CIEND=-99,99	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8405853	DEL00000055	C	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8410818;PE=3;MAPQ=37;CT=3to5;CIPOS=-76,76;CIEND=-76,76	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8507352	DEL00000056	A	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8508193;PE=5;MAPQ=37;CT=3to5;CIPOS=-121,121;CIEND=-121,121	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8540750	DEL00000057	T	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8544830;PE=4;MAPQ=37;CT=3to5;CIPOS=-181,181;CIEND=-181,181	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8607361	DEL00000058	A	<DEL>	222	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8608882;PE=6;MAPQ=37;CT=3to5;CIPOS=-68,68;CIEND=-68,68	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8681669	DEL00000059	C	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8685132;PE=4;MAPQ=37;CT=3to5;CIPOS=-74,74;CIEND=-74,74	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8824490	DEL00000060	G	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8826563;PE=3;MAPQ=37;CT=3to5;CIPOS=-60,60;CIEND=-60,60	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	8923597	DEL00000061	C	<DEL>	134	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=8926010;PE=4;MAPQ=37;CT=3to5;CIPOS=-156,156;CIEND=-156,156	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9090265	DEL00000062	C	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9093228;PE=4;MAPQ=37;CT=3to5;CIPOS=-128,128;CIEND=-128,128	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9119366	DEL00000063	T	<DEL>	74	LowQual	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9123335;PE=2;MAPQ=37;CT=3to5;CIPOS=-140,140;CIEND=-140,140	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9178997	DEL00000064	T	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9182500;PE=5;MAPQ=37;CT=3to5;CIPOS=-66,66;CIEND=-66,66	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9226404	DEL00000065	T	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9227636;PE=3;MAPQ=37;CT=3to5;CIPOS=-127,127;CIEND=-127,127	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9319688	DEL00000066	C	<DEL>	111	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9320353;PE=3;MAPQ=37;CT=3to5;CIPOS=-133,133;CIEND=-133,133	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9359380	DEL00000067	A	<DEL>	333	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9361199;PE=9;MAPQ=37;CT=3to5;CIPOS=-80,80;CIEND=-80,80	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9501567	DEL00000068	G	<DEL>	247	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9504493;PE=7;MAPQ=37;CT=3to5;CIPOS=-62,62;CIEND=-62,62	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9596261	DEL00000069	A	<DEL>	370	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9599737;PE=10;MAPQ=37;CT=3to5;CIPOS=-64,64;CIEND=-64,64	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9670189	DEL00000070	A	<DEL>	185	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9673420;PE=5;MAPQ=37;CT=3to5;CIPOS=-145,145;CIEND=-145,145	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9721367	DEL00000071	T	<DEL>	370	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9723693;PE=10;MAPQ=37;CT=3to5;CIPOS=-62,62;CIEND=-62,62	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9754516	DEL00000072	T	<DEL>	284	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9757726;PE=8;MAPQ=37;CT=3to5;CIPOS=-50,50;CIEND=-50,50	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0
chr16	9894428	DEL00000073	T	<DEL>	148	PASS	IMPRECISE;SVTYPE=DEL;SVMETHOD=EMBL.DELLYv0.8.3;END=9898668;PE=4;MAPQ=37;CT=3to5;CIPOS=-91,91;CIEND=-91,91	GT:GL:GQ:FT:RCL:RC:RCR:CN:DR:DV:RR:RV	./.:0,0,0:0:LowQual:0:746617080:32642:45746:0:0:0:0