Mercurial > repos > iuc > delly_cnv

comparison macros.xml @ 1:56781a718729 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit d76130cdcb21f0390b4e68e733d38575fd5cc6c7"
author iuc
date Tue, 14 Dec 2021 19:06:35 +0000
parents d402af96808e
children 8ad49c4272ea
comparison
equal deleted inserted replaced
0:d402af96808e 1:56781a718729
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">0.8.7</token> 3 <token name="@TOOL_VERSION@">0.9.1</token>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">delly</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">delly</requirement>
8 <requirement type="package" version="1.10.2">bcftools</requirement> 8 <requirement type="package" version="1.12">bcftools</requirement>
9 </requirements> 9 </requirements>
10 </xml> 10 </xml>
11 <xml name="version_command"> 11 <xml name="version_command">
12 <version_command><![CDATA[delly -v 2>&1 | grep 'Delly version' | cut -f 3 -d ' ']]></version_command> 12 <version_command><![CDATA[delly -v 2>&1 | grep 'Delly version' | cut -f 3 -d ' ']]></version_command>
13 </xml> 13 </xml>
14 <xml name="citations"> 14 <xml name="citations">
15 <citations> 15 <citations>
16 <citation type="doi">10.1093/bioinformatics/bts378</citation> 16 <citation type="doi">10.1093/bioinformatics/bts378</citation>
17 </citations> 17 </citations>
18 </xml> 18 </xml>
19 19 <xml name="bio_tools">
20 <xrefs>
21 <xref type="bio.tools">delly2</xref>
22 </xrefs>
23 </xml>
20 <!-- command --> 24 <!-- command -->
21 25
22 <token name="@BAM@"><![CDATA[ 26 <token name="@BAM@"><![CDATA[
23 #for $i, $current in enumerate($input) 27 #for $i, $current in enumerate($input)
24 ln -s '${current}' 'input_${i}.bam' && 28 ln -s '${current}' 'input_${i}.bam' &&