Mercurial > repos > iuc > delly_lr

changeset 3:d30785dbe6b7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit d76130cdcb21f0390b4e68e733d38575fd5cc6c7"
author iuc
date Tue, 14 Dec 2021 19:06:16 +0000
parents ceda4714f3a1
children 7bd397ff21a2
files lr.xml macros.xml
diffstat 2 files changed, 9 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/lr.xml	Fri Jan 22 14:32:45 2021 +0000
+++ b/lr.xml	Tue Dec 14 19:06:16 2021 +0000
@@ -1,6 +1,7 @@
 <?xml version="1.0"?>
 <tool id="delly_lr" name="Delly long-read (lr)" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="18.01">
     <description>optimized calling and genotyping of structural variants</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
--- a/macros.xml	Fri Jan 22 14:32:45 2021 +0000
+++ b/macros.xml	Tue Dec 14 19:06:16 2021 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">0.8.7</token>
+    <token name="@TOOL_VERSION@">0.9.1</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">delly</requirement>
-            <requirement type="package" version="1.10.2">bcftools</requirement>
+            <requirement type="package" version="1.12">bcftools</requirement>
         </requirements>
     </xml>
     <xml name="version_command">
@@ -16,7 +16,11 @@
             <citation type="doi">10.1093/bioinformatics/bts378</citation>
         </citations>
     </xml>
-	
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">delly2</xref>
+        </xrefs>
+    </xml>
     <!-- command -->
 
     <token name="@BAM@"><![CDATA[
@@ -148,4 +152,4 @@
     <token name="@REFERENCES@"><![CDATA[
 More information are available on `GitHub <https://github.com/dellytools/delly>`_.
     ]]></token>
-</macros>
\ No newline at end of file
+</macros>