Mercurial > repos > iuc > deseq2
annotate test-data/Homo_sapiens.GRCh38.94.gtf @ 21:a6fc9228e1a0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 05bc13637dc9f8e523bc72844ff6eb0794f98ad3
| author | iuc |
|---|---|
| date | Mon, 28 Jan 2019 12:04:08 -0500 |
| parents | 89d26b11d452 |
| children |
| rev | line source |
|---|---|
|
20
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
1 #!genome-build GRCh38.p12 |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
2 #!genome-version GRCh38 |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
3 #!genome-date 2013-12 |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
4 #!genome-build-accession NCBI:GCA_000001405.27 |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
5 #!genebuild-last-updated 2018-07 |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
6 # Trimmed version of ftp://ftp.ensembl.org/pub/release-94/gtf/homo_sapiens/Homo_sapiens.GRCh38.94.gtf.gz |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
7 5 ensembl_havana gene 36035017 36071358 . - . gene_id "ENSG00000168671"; gene_version "9"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
8 5 ensembl_havana transcript 36035017 36066891 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
9 5 ensembl_havana exon 36066696 36066891 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; exon_id "ENSE00001299572"; exon_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
10 5 ensembl_havana CDS 36066696 36066789 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; protein_id "ENSP00000282507"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
11 5 ensembl_havana start_codon 36066787 36066789 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
12 5 ensembl_havana exon 36064249 36064350 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "2"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; exon_id "ENSE00003574795"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
13 5 ensembl_havana CDS 36064249 36064350 . - 2 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "2"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; protein_id "ENSP00000282507"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
14 5 ensembl_havana exon 36051870 36051984 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "3"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; exon_id "ENSE00003558123"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
15 5 ensembl_havana CDS 36051870 36051984 . - 2 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "3"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; protein_id "ENSP00000282507"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
16 5 ensembl_havana exon 36048889 36049420 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "4"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; exon_id "ENSE00001122183"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
17 5 ensembl_havana CDS 36048889 36049420 . - 1 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "4"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; protein_id "ENSP00000282507"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
18 5 ensembl_havana exon 36039477 36039708 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; exon_id "ENSE00003678886"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
19 5 ensembl_havana CDS 36039477 36039708 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; protein_id "ENSP00000282507"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
20 5 ensembl_havana exon 36037797 36038016 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "6"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; exon_id "ENSE00003675852"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
21 5 ensembl_havana CDS 36037797 36038016 . - 2 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "6"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; protein_id "ENSP00000282507"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
22 5 ensembl_havana exon 36035017 36035974 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "7"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; exon_id "ENSE00001305148"; exon_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
23 5 ensembl_havana CDS 36035701 36035974 . - 1 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "7"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; protein_id "ENSP00000282507"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
24 5 ensembl_havana stop_codon 36035698 36035700 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; exon_number "7"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
25 5 ensembl_havana five_prime_utr 36066790 36066891 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
26 5 ensembl_havana three_prime_utr 36035017 36035697 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000282507"; transcript_version "7"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS3914"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
27 5 ensembl_havana transcript 36035337 36066882 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
28 5 ensembl_havana exon 36066696 36066882 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; exon_id "ENSE00003618618"; exon_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
29 5 ensembl_havana CDS 36066696 36066789 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; protein_id "ENSP00000427404"; protein_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
30 5 ensembl_havana start_codon 36066787 36066789 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
31 5 ensembl_havana exon 36051870 36051984 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "2"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; exon_id "ENSE00003558123"; exon_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
32 5 ensembl_havana CDS 36051870 36051984 . - 2 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "2"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; protein_id "ENSP00000427404"; protein_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
33 5 ensembl_havana exon 36048889 36049420 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "3"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; exon_id "ENSE00001122183"; exon_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
34 5 ensembl_havana CDS 36048889 36049420 . - 1 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "3"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; protein_id "ENSP00000427404"; protein_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
35 5 ensembl_havana exon 36039477 36039708 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "4"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; exon_id "ENSE00003678886"; exon_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
36 5 ensembl_havana CDS 36039477 36039708 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "4"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; protein_id "ENSP00000427404"; protein_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
37 5 ensembl_havana exon 36037797 36038016 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; exon_id "ENSE00003675852"; exon_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
38 5 ensembl_havana CDS 36037797 36038016 . - 2 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; protein_id "ENSP00000427404"; protein_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
39 5 ensembl_havana exon 36035337 36035974 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "6"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; exon_id "ENSE00002055049"; exon_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
40 5 ensembl_havana CDS 36035701 36035974 . - 1 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "6"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; protein_id "ENSP00000427404"; protein_version "1"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
41 5 ensembl_havana stop_codon 36035698 36035700 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; exon_number "6"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
42 5 ensembl_havana five_prime_utr 36066790 36066882 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
43 5 ensembl_havana three_prime_utr 36035337 36035697 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000513300"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-204"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS54842"; tag "basic"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
44 5 havana transcript 36035355 36066882 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
45 5 havana exon 36066696 36066882 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003618618"; exon_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
46 5 havana CDS 36066696 36066789 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000426017"; protein_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
47 5 havana start_codon 36066787 36066789 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "1"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
48 5 havana exon 36064249 36064350 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "2"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003574795"; exon_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
49 5 havana CDS 36064249 36064350 . - 2 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "2"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000426017"; protein_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
50 5 havana exon 36051870 36051984 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "3"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003558123"; exon_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
51 5 havana CDS 36051870 36051984 . - 2 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "3"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000426017"; protein_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
52 5 havana exon 36039477 36039708 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "4"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003578191"; exon_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
53 5 havana CDS 36039660 36039708 . - 1 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "4"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000426017"; protein_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
54 5 havana stop_codon 36039657 36039659 . - 0 gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "4"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
55 5 havana exon 36037797 36038016 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003691910"; exon_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
56 5 havana exon 36035355 36035974 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; exon_number "6"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003625951"; exon_version "1"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
57 5 havana five_prime_utr 36066790 36066882 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
58 5 havana three_prime_utr 36039477 36039656 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
59 5 havana three_prime_utr 36037797 36038016 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
60 5 havana three_prime_utr 36035355 36035974 . - . gene_id "ENSG00000168671"; gene_version "9"; transcript_id "ENST00000504685"; transcript_version "5"; gene_name "UGT3A2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "UGT3A2-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
61 12 ensembl_havana gene 53938765 53946544 . + . gene_id "ENSG00000123364"; gene_version "4"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
62 12 ensembl_havana transcript 53938765 53946544 . + . gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
63 12 ensembl_havana exon 53938765 53939642 . + . gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; exon_number "1"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; exon_id "ENSE00000838327"; exon_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
64 12 ensembl_havana CDS 53938907 53939642 . + 0 gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; exon_number "1"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; protein_id "ENSP00000243056"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
65 12 ensembl_havana start_codon 53938907 53938909 . + 0 gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; exon_number "1"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
66 12 ensembl_havana exon 53945000 53946544 . + . gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; exon_number "2"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; exon_id "ENSE00000838328"; exon_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
67 12 ensembl_havana CDS 53945000 53945253 . + 2 gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; exon_number "2"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; protein_id "ENSP00000243056"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
68 12 ensembl_havana stop_codon 53945254 53945256 . + 0 gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; exon_number "2"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
69 12 ensembl_havana five_prime_utr 53938765 53938906 . + . gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
70 12 ensembl_havana three_prime_utr 53945257 53946544 . + . gene_id "ENSG00000123364"; gene_version "4"; transcript_id "ENST00000243056"; transcript_version "4"; gene_name "HOXC13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8865"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
71 12 ensembl_havana gene 53954834 53958956 . + . gene_id "ENSG00000123407"; gene_version "3"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
72 12 ensembl_havana transcript 53954834 53958956 . + . gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
73 12 ensembl_havana exon 53954834 53955539 . + . gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; exon_number "1"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; exon_id "ENSE00001059266"; exon_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
74 12 ensembl_havana CDS 53954930 53955539 . + 0 gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; exon_number "1"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; protein_id "ENSP00000243103"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
75 12 ensembl_havana start_codon 53954930 53954932 . + 0 gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; exon_number "1"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
76 12 ensembl_havana exon 53956328 53958956 . + . gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; exon_number "2"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; exon_id "ENSE00000838329"; exon_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
77 12 ensembl_havana CDS 53956328 53956563 . + 2 gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; exon_number "2"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; protein_id "ENSP00000243103"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
78 12 ensembl_havana stop_codon 53956564 53956566 . + 0 gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; exon_number "2"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
79 12 ensembl_havana five_prime_utr 53954834 53954929 . + . gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
80 12 ensembl_havana three_prime_utr 53956567 53958956 . + . gene_id "ENSG00000123407"; gene_version "3"; transcript_id "ENST00000243103"; transcript_version "3"; gene_name "HOXC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8866"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
81 12 ensembl_havana gene 53973126 53977643 . + . gene_id "ENSG00000123388"; gene_version "4"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
82 12 ensembl_havana transcript 53973126 53977643 . + . gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
83 12 ensembl_havana exon 53973126 53973923 . + . gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; exon_number "1"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; exon_id "ENSE00002343306"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
84 12 ensembl_havana CDS 53973242 53973923 . + 0 gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; exon_number "1"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; protein_id "ENSP00000446680"; protein_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
85 12 ensembl_havana start_codon 53973242 53973244 . + 0 gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; exon_number "1"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
86 12 ensembl_havana exon 53975181 53977643 . + . gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; exon_number "2"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; exon_id "ENSE00002362919"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
87 12 ensembl_havana CDS 53975181 53975410 . + 2 gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; exon_number "2"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; protein_id "ENSP00000446680"; protein_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
88 12 ensembl_havana stop_codon 53975411 53975413 . + 0 gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; exon_number "2"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
89 12 ensembl_havana five_prime_utr 53973126 53973241 . + . gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
90 12 ensembl_havana three_prime_utr 53975414 53977643 . + . gene_id "ENSG00000123388"; gene_version "4"; transcript_id "ENST00000546378"; transcript_version "1"; gene_name "HOXC11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8867"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
91 12 ensembl_havana gene 53985065 53990279 . + . gene_id "ENSG00000180818"; gene_version "4"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
92 12 ensembl_havana transcript 53985186 53990279 . + . gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
93 12 ensembl_havana exon 53985186 53986010 . + . gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; exon_number "1"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; exon_id "ENSE00001151648"; exon_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
94 12 ensembl_havana CDS 53985260 53986010 . + 0 gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; exon_number "1"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; protein_id "ENSP00000307321"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
95 12 ensembl_havana start_codon 53985260 53985262 . + 0 gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; exon_number "1"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
96 12 ensembl_havana exon 53989169 53990279 . + . gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; exon_number "2"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; exon_id "ENSE00001151643"; exon_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
97 12 ensembl_havana CDS 53989169 53989443 . + 2 gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; exon_number "2"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; protein_id "ENSP00000307321"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
98 12 ensembl_havana stop_codon 53989444 53989446 . + 0 gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; exon_number "2"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
99 12 ensembl_havana five_prime_utr 53985186 53985259 . + . gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
100 12 ensembl_havana three_prime_utr 53989447 53990279 . + . gene_id "ENSG00000180818"; gene_version "4"; transcript_id "ENST00000303460"; transcript_version "4"; gene_name "HOXC10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8868"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
101 12 ensembl_havana gene 53990624 54030823 . + . gene_id "ENSG00000197757"; gene_version "7"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
102 12 ensembl_havana transcript 54015897 54030733 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
103 12 ensembl_havana exon 54015897 54017414 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; exon_number "1"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; exon_id "ENSE00002068738"; exon_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
104 12 ensembl_havana exon 54028576 54028921 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; exon_number "2"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; exon_id "ENSE00001518112"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
105 12 ensembl_havana CDS 54028768 54028921 . + 0 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; exon_number "2"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; protein_id "ENSP00000377864"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
106 12 ensembl_havana start_codon 54028768 54028770 . + 0 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; exon_number "2"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
107 12 ensembl_havana exon 54029655 54030733 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; exon_number "3"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; exon_id "ENSE00002030800"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
108 12 ensembl_havana CDS 54029655 54029959 . + 2 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; exon_number "3"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; protein_id "ENSP00000377864"; protein_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
109 12 ensembl_havana stop_codon 54029960 54029962 . + 0 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; exon_number "3"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
110 12 ensembl_havana five_prime_utr 54015897 54017414 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
111 12 ensembl_havana five_prime_utr 54028576 54028767 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
112 12 ensembl_havana three_prime_utr 54029963 54030733 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000394331"; transcript_version "3"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS41792"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
113 12 ensembl_havana transcript 54028358 54030823 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
114 12 ensembl_havana exon 54028358 54028921 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; exon_number "1"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; exon_id "ENSE00000838340"; exon_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
115 12 ensembl_havana CDS 54028522 54028921 . + 0 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; exon_number "1"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; protein_id "ENSP00000243108"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
116 12 ensembl_havana start_codon 54028522 54028524 . + 0 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; exon_number "1"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
117 12 ensembl_havana exon 54029655 54030823 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; exon_number "2"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; exon_id "ENSE00000838341"; exon_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
118 12 ensembl_havana CDS 54029655 54029959 . + 2 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; exon_number "2"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; protein_id "ENSP00000243108"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
119 12 ensembl_havana stop_codon 54029960 54029962 . + 0 gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; exon_number "2"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
120 12 ensembl_havana five_prime_utr 54028358 54028521 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
121 12 ensembl_havana three_prime_utr 54029963 54030823 . + . gene_id "ENSG00000197757"; gene_version "7"; transcript_id "ENST00000243108"; transcript_version "4"; gene_name "HOXC6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC6-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8871"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
122 12 ensembl_havana gene 53994895 54003337 . + . gene_id "ENSG00000180806"; gene_version "4"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
123 12 ensembl_havana transcript 54000119 54003337 . + . gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
124 12 ensembl_havana exon 54000119 54000726 . + . gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; exon_number "1"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; exon_id "ENSE00001151635"; exon_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
125 12 ensembl_havana CDS 54000189 54000726 . + 0 gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; exon_number "1"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; protein_id "ENSP00000302836"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
126 12 ensembl_havana start_codon 54000189 54000191 . + 0 gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; exon_number "1"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
127 12 ensembl_havana exon 54002430 54003337 . + . gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; exon_number "2"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; exon_id "ENSE00001151626"; exon_version "5"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
128 12 ensembl_havana CDS 54002430 54002671 . + 2 gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; exon_number "2"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; protein_id "ENSP00000302836"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
129 12 ensembl_havana stop_codon 54002672 54002674 . + 0 gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; exon_number "2"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
130 12 ensembl_havana five_prime_utr 54000119 54000188 . + . gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
131 12 ensembl_havana three_prime_utr 54002675 54003337 . + . gene_id "ENSG00000180806"; gene_version "4"; transcript_id "ENST00000303450"; transcript_version "4"; gene_name "HOXC9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8869"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
132 12 ensembl_havana gene 54009106 54012362 . + . gene_id "ENSG00000037965"; gene_version "5"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
133 12 ensembl_havana transcript 54009106 54012362 . + . gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
134 12 ensembl_havana exon 54009106 54009720 . + . gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; exon_number "1"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; exon_id "ENSE00000748009"; exon_version "6"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
135 12 ensembl_havana CDS 54009285 54009720 . + 0 gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; exon_number "1"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; protein_id "ENSP00000040584"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
136 12 ensembl_havana start_codon 54009285 54009287 . + 0 gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; exon_number "1"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
137 12 ensembl_havana exon 54011089 54012362 . + . gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; exon_number "2"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; exon_id "ENSE00000838338"; exon_version "6"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
138 12 ensembl_havana CDS 54011089 54011378 . + 2 gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; exon_number "2"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; protein_id "ENSP00000040584"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
139 12 ensembl_havana stop_codon 54011379 54011381 . + 0 gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; exon_number "2"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
140 12 ensembl_havana five_prime_utr 54009106 54009284 . + . gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
141 12 ensembl_havana three_prime_utr 54011382 54012362 . + . gene_id "ENSG00000037965"; gene_version "5"; transcript_id "ENST00000040584"; transcript_version "5"; gene_name "HOXC8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8870"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
142 12 ensembl_havana gene 54016931 54056030 . + . gene_id "ENSG00000198353"; gene_version "7"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
143 12 ensembl_havana transcript 54016931 54055327 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
144 12 ensembl_havana exon 54016931 54017414 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "1"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; exon_id "ENSE00002087480"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
145 12 ensembl_havana exon 54053160 54053276 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "2"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; exon_id "ENSE00001518109"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
146 12 ensembl_havana exon 54053917 54054361 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "3"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; exon_id "ENSE00001151579"; exon_version "5"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
147 12 ensembl_havana CDS 54053923 54054361 . + 0 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "3"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; protein_id "ENSP00000305973"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
148 12 ensembl_havana start_codon 54053923 54053925 . + 0 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "3"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
149 12 ensembl_havana exon 54054850 54055327 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; exon_id "ENSE00001661316"; exon_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
150 12 ensembl_havana CDS 54054850 54055202 . + 2 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; protein_id "ENSP00000305973"; protein_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
151 12 ensembl_havana stop_codon 54055203 54055205 . + 0 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; exon_number "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
152 12 ensembl_havana five_prime_utr 54016931 54017414 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
153 12 ensembl_havana five_prime_utr 54053160 54053276 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
154 12 ensembl_havana five_prime_utr 54053917 54053922 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
155 12 ensembl_havana three_prime_utr 54055206 54055327 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000303406"; transcript_version "4"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
156 12 havana transcript 54053877 54056030 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
157 12 havana exon 54053877 54054361 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; exon_number "1"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; exon_id "ENSE00001664549"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
158 12 havana CDS 54053923 54054361 . + 0 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; exon_number "1"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; protein_id "ENSP00000399808"; protein_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
159 12 havana start_codon 54053923 54053925 . + 0 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; exon_number "1"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
160 12 havana exon 54054850 54056030 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; exon_number "2"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; exon_id "ENSE00001257489"; exon_version "5"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
161 12 havana CDS 54054850 54055202 . + 2 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; exon_number "2"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; protein_id "ENSP00000399808"; protein_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
162 12 havana stop_codon 54055203 54055205 . + 0 gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; exon_number "2"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
163 12 havana five_prime_utr 54053877 54053922 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
164 12 havana three_prime_utr 54055206 54056030 . + . gene_id "ENSG00000198353"; gene_version "7"; transcript_id "ENST00000430889"; transcript_version "2"; gene_name "HOXC4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8873"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
165 12 havana gene 54017110 54035361 . + . gene_id "ENSG00000273046"; gene_version "1"; gene_name "HOXC5"; gene_source "havana"; gene_biotype "processed_transcript"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
166 12 havana transcript 54017110 54035361 . + . gene_id "ENSG00000273046"; gene_version "1"; transcript_id "ENST00000512206"; transcript_version "1"; gene_name "HOXC5"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "HOXC5-202"; transcript_source "havana"; transcript_biotype "processed_transcript"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
167 12 havana exon 54017110 54017414 . + . gene_id "ENSG00000273046"; gene_version "1"; transcript_id "ENST00000512206"; transcript_version "1"; exon_number "1"; gene_name "HOXC5"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "HOXC5-202"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00002024343"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
168 12 havana exon 54034278 54035361 . + . gene_id "ENSG00000273046"; gene_version "1"; transcript_id "ENST00000512206"; transcript_version "1"; exon_number "2"; gene_name "HOXC5"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "HOXC5-202"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00001190306"; exon_version "3"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
169 12 ensembl_havana gene 54032853 54035358 . + . gene_id "ENSG00000172789"; gene_version "3"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
170 12 ensembl_havana transcript 54032853 54035358 . + . gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
171 12 ensembl_havana exon 54032853 54033576 . + . gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; exon_number "1"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; exon_id "ENSE00001190317"; exon_version "4"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
172 12 ensembl_havana CDS 54033123 54033576 . + 0 gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; exon_number "1"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; protein_id "ENSP00000309336"; protein_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
173 12 ensembl_havana start_codon 54033123 54033125 . + 0 gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; exon_number "1"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
174 12 ensembl_havana exon 54034278 54035358 . + . gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; exon_number "2"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; exon_id "ENSE00002053096"; exon_version "1"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
175 12 ensembl_havana CDS 54034278 54034489 . + 2 gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; exon_number "2"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; protein_id "ENSP00000309336"; protein_version "2"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
176 12 ensembl_havana stop_codon 54034490 54034492 . + 0 gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; exon_number "2"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
177 12 ensembl_havana five_prime_utr 54032853 54033122 . + . gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; tag "basic"; transcript_support_level "1"; |
|
89d26b11d452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82fc6e1098b8af8b769ff07689704c5275b76459
iuc
parents:
diff
changeset
|
178 12 ensembl_havana three_prime_utr 54034493 54035358 . + . gene_id "ENSG00000172789"; gene_version "3"; transcript_id "ENST00000312492"; transcript_version "2"; gene_name "HOXC5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "HOXC5-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS8872"; tag "basic"; transcript_support_level "1"; |