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comparison deseq2.xml @ 28:7ff33c2d525b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit a3c52d23c261ef0bd0cc4c3d59900e108ca3f67e"
author iuc
date Fri, 19 Nov 2021 21:03:55 +0000
parents d027d1f4984e
children cd9874cb9019
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27:d027d1f4984e 28:7ff33c2d525b
191 <param name="auto_mean_filter_off" type="boolean" truevalue="1" falsevalue="0" checked="false" 191 <param name="auto_mean_filter_off" type="boolean" truevalue="1" falsevalue="0" checked="false"
192 label="Turn off independent filtering" 192 label="Turn off independent filtering"
193 help=" DESeq2 performs independent filtering by default using the mean of normalized counts as a filter statistic" /> 193 help=" DESeq2 performs independent filtering by default using the mean of normalized counts as a filter statistic" />
194 </section> 194 </section>
195 <section name="output_options" title="Output options"> 195 <section name="output_options" title="Output options">
196 <param name="output_selector" type="select" multiple="True" display="checkboxes" label="Output selector"> 196 <param name="output_selector" type="select" multiple="True" optional="true" display="checkboxes" label="Output selector">
197 <option value="pdf" selected="True">Generate plots for visualizing the analysis results</option> 197 <option value="pdf" selected="True">Generate plots for visualizing the analysis results</option>
198 <option value="normCounts">Output rLog normalized table</option> 198 <option value="normCounts">Output normalised counts</option>
199 <option value="normVST">Output VST normalized table</option> 199 <option value="normVST">Output VST normalized table</option>
200 <option value="normRLog">Output rLog normalized table</option> 200 <option value="normRLog">Output rLog normalized table</option>
201 <option value="many_contrasts">Output all levels vs all levels of primary factor (use when you have >2 levels for primary factor)</option> 201 <option value="many_contrasts">Output all levels vs all levels of primary factor (use when you have >2 levels for primary factor)</option>
202 </param> 202 </param>
203 <param name="alpha_ma" type="float" min="0" max="0.5" value="0.1" label="Alpha value for MA-plot" help="Default value is 0.1. This option is only meaninful when plots are generated" /> 203 <param name="alpha_ma" type="float" min="0" max="0.5" value="0.1" label="Alpha value for MA-plot" help="Default value is 0.1. This option is only meaninful when plots are generated" />