Mercurial > repos > iuc > deseq2

comparison deseq2.xml @ 7:cb23006f34ff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 82d6e2f33ec7b26276715e01c5b17944a0f5cd0f
author iuc
date Mon, 20 Mar 2017 17:23:27 -0400
parents 4939397c4706
children 57e2f9454d9e
comparison
equal deleted inserted replaced
6:4939397c4706 7:cb23006f34ff
9 level="fatal" 9 level="fatal"
10 description="Execution halted." /> 10 description="Execution halted." />
11 <regex match="Error in" 11 <regex match="Error in"
12 source="both" 12 source="both"
13 level="fatal" 13 level="fatal"
14 description="An undefined error occured, please check your intput carefully and contact your administrator." /> 14 description="An undefined error occurred, please check your input carefully and contact your administrator." />
15 <regex match="Fatal error" 15 <regex match="Fatal error"
16 source="both" 16 source="both"
17 level="fatal" 17 level="fatal"
18 description="An undefined error occured, please check your intput carefully and contact your administrator." /> 18 description="An undefined error occurred, please check your input carefully and contact your administrator." />
19 </stdio> 19 </stdio>
20 <version_command> 20 <version_command>
21 <![CDATA[ 21 <![CDATA[
22 echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ") 22 echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
23 ]]> 23 ]]>