diff test-data/sailfish/sailfish_quant.sf1.tab @ 11:25204a860b79 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 0a56599c36b4968095ec5a3cb589f94fb139466c
author iuc
date Sun, 28 Jan 2018 04:04:12 -0500
parents
children bd06df00180a
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sailfish/sailfish_quant.sf1.tab	Sun Jan 28 04:04:12 2018 -0500
@@ -0,0 +1,48010 @@
+Name	Length	EffectiveLength	TPM	NumReads
+NR_001526	164	20.4518	0	0
+NR_001526_1	164	20.4518	0	0
+NR_001526_2	164	20.4518	0	0
+NM_130786	1764	1956.04	2.47415	109.165
+NR_015380	2129	2139.53	1.77331	85.5821
+NM_001198818	9360	7796.58	2.38616e-07	4.19648e-05
+NM_001198819	9527	7964.62	0	0
+NM_001198820	9410	7855.78	0	0
+NM_014576	9267	7714.88	0.0481114	8.37255
+NM_138932	9291	7731.46	0.00379431	0.661721
+NM_138933	9362	7807.79	5.05314e-08	8.89957e-06
+NM_000014	4653	4409.89	0.24127	24
+NR_026971	2187	1863.62	0.0237882	1
+NM_001282424	3789	3581.34	0.0377073	3.04616
+NM_144670	5192	4946.14	0	0
+NR_040112	1201	1003.2	0	0
+NM_001080438	1023	825.205	0	0
+NM_017436	2091	2330.02	3.71018	195
+NM_016161	1771	1538.41	0.0288169	1
+NR_037584	631	433.584	0	0
+NM_001173466	1737	1718.7	0.788668	30.5756
+NM_015665	1836	1823.52	24.555	1010.02
+NM_023928	3321	3451.71	18.0416	1404.72
+NR_024035	2171	2005.65	0.17683	8
+NM_001086	1606	1408.2	0	0
+NM_207365	1498	1300.2	0	0
+NR_110202	772	554.709	0	0
+NR_110203	712	504.798	0.197573	2.24971
+NM_001103170	4049	3746.13	0	0
+NR_111984	3832	3544.11	0.0125087	1
+NM_001013630	1574	1376.2	0	0
+NR_026915	1289	1091.2	0	0
+NM_001286682	2119	1921.2	0	0
+NM_001286683	2192	1994.2	0	0
+NM_016228	2325	2127.2	0	0
+NM_182662	2107	1909.2	0	0
+NM_153698	1224	961.08	9.92751	215.219
+NM_001271885	3083	2616.53	3.02861e-06	0.000178751
+NM_001271886	3344	2930.43	0.784553	51.8601
+NM_024666	3199	2745.6	16.3344	1011.63
+NM_014911	21265	19281.3	1.92796	838.522
+NM_024684	503	300.736	8.99218	61
+NM_001087	1792	1779.05	45.1257	1810.89
+NM_001088	1025	994.938	0.281927	6.32723
+NM_001166579	1912	1920.4	0.239288	10.3656
+NR_110548	1081	1020.55	0	0
+NM_001271874	2486	2478.04	12.9183	722.093
+NM_015511	2765	2802.87	0.963623	60.9243
+NM_001025357	1784	1601.15	0.460407	16.6285
+NM_001605	3344	3359.99	103.444	7840.15
+NM_020745	4782	5078.54	7.81354	895.09
+NM_001261434	1362	1213.6	18.3888	503.393
+NM_001286668	3329	2749.28	0.0644962	3.99975
+NM_001286669	3480	2894.19	0	0
+NM_001286670	3004	2479.85	0.636238	35.5897
+NM_001286671	3182	2644.24	0	0
+NM_001286672	2979	2427.67	0.319081	17.4731
+NM_181806	3601	2990.33	5.85385	394.857
+NM_015423	2861	2301.68	30.4909	1583.05
+NM_005763	5869	4968.07	0.964475	108.083
+NM_012138	2140	2072.74	50.3511	2354.15
+NM_001080395	5309	5111.2	0	0
+NM_004920	5087	4889.2	0	0
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+NM_000663	5585	5538.85	0.0491539	6.14126
+NM_001127448	4907	4801.01	0	0
+NM_020686	4813	4719.12	3.23677	344.551
+NM_005502	10500	9869.98	0.121274	27
+NM_080282	6331	5254.97	0.592957	70.2867
+NR_002451	1895	1572.16	4.30906	152.813
+NM_015657	8084	7219.62	0.153213	24.9512
+NM_173076	9099	8174.47	0.417856	77.0489
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+NM_152701	17184	15365.7	0.0446201	15.4655
+NR_003574	4188	4155.72	0.0213355	2
+NM_001606	8154	9758.44	0.240777	53
+NM_212533	8146	9735.23	3.68264e-10	8.08696e-08
+NM_001089	6623	7555.57	1.06841	182.09
+NM_000350	7323	7521.53	0.0294702	5
+NM_018672	9249	7375.2	2.53354	421.484
+NM_172232	8177	6417.7	7.68305	1112.23
+NM_080284	5296	4461.33	4.20335	423
+NM_019112	6816	8176.27	2.21295	408.138
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+NM_001288986	5827	5629.2	0	0
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+NM_000927	4715	4248.23	0.355861	34.1012
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+NM_001271697	2405	2026.84	0	0
+NM_001271698	2447	2068.17	1.26766	59.1385
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+NM_004299	2528	2141.52	12.1096	584.965
+NM_001282291	4733	5223.17	0.347329	40.9218
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+NM_001282293	4369	4792.51	0.0625372	6.76054
+NM_007188	4682	5173.62	3.66337	427.519
+NM_001243013	3339	3703.14	3.75408e-07	3.13584e-05
+NM_001243014	2443	2245.2	0	0
+NM_019624	3399	3799.67	0.615924	52.7902
+NM_019625	3528	3917.78	0	0
+NM_203444	2636	2864.8	0.0341962	2.2098
+NM_004996	6561	7028.12	15.7167	2491.61
+NM_001198934	5028	5595.35	3.03122	382.582
+NM_033450	5088	5560.98	1.36915	171.744
+NM_032583	4576	4378.2	0	0
+NM_033151	4862	4664.2	0	0
+NM_145186	4462	4264.2	0	0
+NM_033226	5168	4970.2	0	0
+NR_003087	2822	2260.92	0.218719	11.1545
+NR_003088	810	612.348	0	0
+NM_000392	5446	5017.77	0.159031	18
+NM_001144070	1883	1685.2	0	0
+NM_003786	5165	4967.2	0	0
+NM_001105515	3063	2716.7	0.426124	26.1131
+NM_005845	5842	5176.7	8.00548	934.804
+NM_001023587	1972	1780.94	1.04397	41.939
+NM_005688	5841	5843.41	1.06262	140.063
+NR_046570	467	270.264	0	0
+NM_001079528	717	519.401	0	0
+NM_001171	5116	5671.51	0.00781666	1
+NR_003569	2722	2524.2	0	0
+NR_023387	706	508.401	0	0
+NM_000352	4920	4722.2	0	0
+NM_001287174	4923	4725.2	0	0
+NM_005691	4670	4472.2	0	0
+NM_020297	8322	6987.16	3.67903	579.849
+NM_000033	3664	4290.58	1.32255	128
+NM_005164	5341	4279.23	1.35891	131.171
+NM_001122674	966	708.393	0.156223	2.49631
+NM_002858	3615	2923.6	12.3926	817.262
+NM_005050	3157	3083.81	5.83687	406.02
+NR_003256	3029	2960.82	1.18258	78.9809
+NM_001040876	4190	3406.55	5.12275	393.638
+NM_002940	4193	3409.46	56.0004	4306.82
+NM_001025091	3462	3501.72	33.7271	2664.04
+NM_001090_1	3348	3378.66	0	0
+NM_005692	2393	2292.89	17.5107	905.661
+NM_007189	4695	4608.97	12.2072	1269.11
+NM_018358	2572	2688.56	15.1144	916.625
+NM_004915	2993	3090.66	2.14928	149.839
+NM_016818	2957	3056.55	0.603506	41.6096
+NM_207174	2958	3046.18	1.14621e-09	7.87586e-08
+NM_207627	3117	3123.92	0	0
+NM_207628	3035	3095.46	0	0
+NM_207629	2921	2988.55	2.39886	161.713
+NM_001257386	4275	4077.2	0	0
+NM_004827	4430	3754.73	0.129878	11
+NM_001142505	3609	3781.14	0.0117246	1
+NM_022169	3833	4007.9	0	0
+NM_022436	2739	2606.85	0.0170061	1
+NM_022437	2664	2466.2	0	0
+NM_032604	1444	1364.21	0.0651275	2.00413
+NM_001272069	2805	2253.15	1.29761	65.9499
+NM_018394	2753	2209.24	16.8192	838.163
+NR_073570	2569	2051.17	0	0
+NR_073571	2457	1931.34	0.34856	15.1851
+NM_001145364	1296	1259.72	0.504215	14.3275
+NM_148912	1467	1450.36	4.1031	134.236
+NM_148913	1446	1382.38	0	0
+NR_026910	1462	1440.29	0	0
+NR_026912	1638	1635.54	0.316589	11.6799
+NM_001042472	2122	2232.97	14.1887	714.67
+NM_015600	1723	1728.87	0.562697	21.944
+NM_001206673	1707	1412.26	0	0
+NM_181814	1476	1198.42	0.258947	7
+NM_032859	5301	4066.3	4.78614	439
+NM_015407	1107	1056.97	4.89237	116.644
+NR_037192	1878	1910.58	0.171699	7.39971
+NM_001146314	2242	2320.67	20.4353	1069.73
+NM_001254753	2003	2027.1	2.21987	101.504
+NM_032750	2436	2520.34	4.48467	254.959
+NM_198147	3353	3526.87	4.1855	332.978
+NM_001177515	2144	2172.48	0.424263	20.7908
+NM_021160	2017	2030.41	8.96967	410.809
+NR_033488_2	2268	2241.37	0	0
+NR_033489_1	1893	1905.45	0.878592	37.7629
+NM_080622	1776	2065.94	1.09439	51
+NM_001130111	1562	1795.11	23.1266	936.448
+NM_031213	1715	1895.09	0	0
+NM_001025780	3103	2689.22	8.98906	545.281
+NM_016014	1611	1521.39	0.341172	11.7083
+NM_021214	2358	2228.96	1.05413	53
+NM_007011	9133	8748.44	0	0
+NM_152924	8735	8435.45	6.88283	1309.65
+NM_138340	2064	1667.11	10.4508	393
+NM_022060	2508	2479.54	17.8692	999.44
+NM_016006	5352	4346.67	1.99905	196.002
+NM_020676	2391	2298.29	5.1888	269
+NM_024527	2089	2413.69	4.90449	267.027
+NM_001012750	3642	2951.19	0	0
+NM_001012751	3555	2835.12	6.59723	421.903
+NM_001012752	3627	2913.49	0	0
+NM_001178116	3687	2971.31	4.21844e-07	2.82735e-05
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+NM_001178121	3537	2816.09	9.29033	590.144
+NM_001178122	3465	2751.41	0.110543	6.86067
+NM_001178123	3378	2663.57	0	0
+NM_001178124	3363	2645.36	14.1419	843.866
+NM_001178125	3186	2517.7	0	0
+NM_005470	3723	3011.24	0.596035	40.4853
+NM_001282925	6638	5865.98	0	0
+NM_001282926	6620	5843.48	0.21914	28.885
+NM_001282927	6113	5218.96	0.955781	112.518
+NM_001282932	6634	5784.54	0.195059	25.4516
+NM_005759	6524	5714.62	7.00225	902.621
+NM_001135186	2091	2173.81	0	0
+NM_016428	2109	2268.94	34.5375	1767.64
+NM_015429	4471	3848.47	0.0921557	8
+NM_005157	5386	5983.91	4.51589	609.548
+NM_007313	5879	6460.41	6.48973	945.729
+NM_001136000	11630	10635.9	0.433323	103.96
+NM_001136001	2139	1941.2	0	0
+NM_001168236	12163	11321	0.0927933	23.6964
+NM_001168237	11917	11068	0.0599199	14.9596
+NM_001168238	11854	11003.1	0.0583993	14.4945
+NM_001168239	11567	10571.1	0.119817	28.5705
+NM_005158	11939	10953.9	0.65253	161.231
+NM_007314	12226	11385.9	0.0948052	24.349
+NM_001003407	7608	7159.27	0.0217767	3.51674
+NM_001003408	7692	7226.27	0	0
+NM_002313	7585	7135.88	0.955904	153.866
+NM_006720	6838	6322.1	7.92954	1130.81
+NM_001130083	3760	3972.88	0	0
+NM_001130084	3658	3872.85	0	0
+NM_001130085	3541	3735.76	0	0
+NM_001130086	3502	3792.59	0	0
+NM_001130087	3418	3712.28	7.47844e-08	6.26228e-06
+NM_001130088	2577	2715.27	0.0216883	1.32837
+NM_001286688	3022	3122.89	0	0
+NM_032432	3388	3669.32	0.0443601	3.67162
+NM_014945	4335	4356.02	0.0203545	2
+NM_020469	1579	1381.2	0	0
+NM_001092	5063	5471.94	7.56105	933.262
+NM_001159746	5604	6116.31	2.02901	279.933
+NM_001256847	3595	3896.65	0	0
+NM_001282149	4775	5160.93	0	0
+NM_021962	5389	5916.81	4.19534	559.931
+NM_139166	2753	2288.31	0.0775566	4.00327
+NM_021243	845	563.262	161.148	2047.47
+NM_013375	2261	2089.37	17.8871	843.017
+NM_032548	1986	2129.2	0.934637	44.889
+NM_172027	1975	2116.01	2.74697	131.115
+NR_033429	1940	2075.59	2.81823e-06	0.000131946
+NM_145804	4902	5556.22	1.46811	184
+NR_110249	1745	1547.2	0	0
+NR_110250	1795	1597.2	0	0
+NM_001130410	1539	1533.09	1.69468	58.6051
+NM_001607	1818	1835.73	19.9774	827.233
+NR_024024	1943	1981.66	3.65075	163.189
+NM_006111	1933	1724.42	46.7588	1818.81
+NM_198834	9988	9715.66	0.737739	161.68
+NM_198836	9555	9223.54	5.39611	1122.69
+NM_198837	9625	9204.46	0	0
+NM_198838	9736	9365.91	0.245124	51.7865
+NM_198839	10662	10399.2	0.774467	181.67
+NM_001093	9247	9948.74	0.324412	72.8024
+NM_001136538	4106	4204.7	2.73248	259.162
+NM_025247	4013	4104.64	4.53501	419.888
+NM_032169	3554	3240.91	8.20606	599.904
+NM_014384	2199	2048.69	7.81179	361
+NM_014049	2574	2577.75	17.2162	1001.06
+NR_033426	2750	2787.19	1.03297	64.943
+NM_001608	2488	2290.2	0	0
+NM_000016	2620	2214.84	115.422	5766.48
+NM_001127328	2632	2224.04	1.76262	88.4261
+NM_001286042	2532	2131.28	4.69124	225.533
+NM_001286043	2719	2300.95	0.466985	24.2376
+NM_001286044	2350	1972.51	0.134303	5.97563
+NM_000017	1916	2087.2	9.40935	443
+NM_001609	5940	5020.45	9.5175	1077.82
+NM_000018	2292	2370.34	42.7707	2286.85
+NM_001033859	2226	2289.83	1.53002	79.028
+NM_001270447	2228	2262.97	16.4947	841.981
+NM_001270448	2367	2465.45	3.54267	197.019
+NM_001135	8543	8345.2	0	0
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+NM_014716	2508	2693.09	51.9231	3154.22
+NM_012287	7169	5962.07	17.8899	2405.94
+NM_030649	3759	4440.82	3.72581	373.219
+NM_000019	2132	1704.67	55.8771	2148.59
+NM_005891	1549	1286.61	85.2614	2474.46
+NM_022735	3563	3068.64	20.3305	1407.26
+NM_001135704	2028	2087.02	0	0
+NM_001135705	1865	1980.3	1.17914	52.6714
+NM_001135706	1903	2020.03	2.61687	119.24
+NM_001135707	1500	1500.58	1.53997	52.1257
+NM_024722	2019	2145.51	0.668913	32.3729
+NM_001042473	3859	3206.99	8.133	588.341
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+NM_032360	1615	1577.82	22.4226	798.039
+NM_001039844	3369	2842.89	1.3293	85.2441
+NM_001127219	1877	1840.96	0.367747	15.2712
+NM_032592	2173	2213.15	4.05045	202.206
+NM_001031854	1820	1650.08	0.483602	18
+NM_001082486	2065	2258.76	9.23075	470.312
+NM_001082487	2017	2130.03	0	0
+NM_022914	2056	2253.21	0.751565	38.1987
+NM_000789	4967	5543.75	0.0663331	8.29496
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+NM_018367	4387	3566.27	3.02864	243.636
+NM_000665	2203	2505.11	0.363311	20.5299
+NM_001282449	1990	2238.44	3.98849e-07	2.01388e-05
+NM_015831	2956	3421.04	0.0968029	7.47011
+NM_001164814	4896	5153.92	5.90695	686.723
+NM_001164815	4815	5069.27	8.10734	927.053
+NM_001164816	2454	2583.74	5.72261	333.52
+NM_001164817	2516	2642.74	12.3436	735.827
+NM_014977	4935	5206.41	5.45899	641.107
+NM_001122951	1240	1102.97	0	0
+NM_002036	2006	1930.97	0.32142	14
+NM_001296	2959	2826.81	0.521779	33.2708
+NM_020311	2098	1935.44	1.51176	66
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