Mercurial > repos > iuc > deseq2

diff test-data/sailfish_quant_result4.tab @ 6:4939397c4706 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 3bc8d91ee546682ef8e9303bd1044bb14cf21b07
author iuc
date Wed, 09 Nov 2016 17:00:31 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sailfish_quant_result4.tab	Wed Nov 09 17:00:31 2016 -0500
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+# sailfish (quasi-mapping-based) v0.7.6
+# [ program ] => sailfish 
+# [ command ] => quant 
+# [ index ] => { ./index_dir }
+# [ mates1 ] => { ./mate1.fastq }
+# [ mates2 ] => { ./mate2.fastq }
+# [ libType ] => { IU }
+# [ output ] => { ./ }
+# [ biasCorrect ] => { }
+# [ threads ] => { 1 }
+# [ fldMean ] => { 200 }
+# [ fldSD ] => { 80 }
+# [ maxReadOcc ] => { 200 }
+# [ maxFragLen ] => { 1000 }
+# [ txpAggregationKey ] => { gene_id }
+# [ mapping rate ] => { 100% }
+# Name	Length	TPM	NumReads
+NM_001168316	2283	12398.5	15.361
+NM_174914	2385	111260	120.04
+NR_031764	1853	10300.5	12.595
+NM_004503	1681	36250.8	32.806
+NM_006897	1541	80900.3	75
+NM_014212	2037	4900.08	540
+NM_014620	2300	45300.7	51.838
+NM_017409	1959	4400.19	470
+NM_017410	2396	3500.5	420
+NM_018953	1612	26568.3	30
+NM_022658	2288	378938	480
+NM_153633	1666	40878.4	3350.074
+NM_153693	2072	6830.57	740.2815
+NM_173860	849	240818	90
+NR_003084	1640	20	95