diff deseq2_macros.xml @ 27:d027d1f4984e draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit c8e7020d39d581d7374a13cf94c64998a6481e05"
author iuc
date Mon, 28 Jun 2021 05:14:25 +0000
parents e5c8afac22a7
children 7ff33c2d525b
line wrap: on
line diff
--- a/deseq2_macros.xml	Fri Jan 08 20:29:54 2021 +0000
+++ b/deseq2_macros.xml	Mon Jun 28 05:14:25 2021 +0000
@@ -18,4 +18,38 @@
             </repeat>
         </repeat>
     </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="1.22.1">bioconductor-deseq2</requirement>
+            <!-- Optional dependency of tximport, needed to import kallisto results https://github.com/galaxyproject/usegalaxy-playbook/issues/161 -->
+            <requirement type="package" version="2.26.2">bioconductor-rhdf5</requirement>
+            <requirement type="package" version="1.10.0">bioconductor-tximport</requirement>
+            <requirement type="package" version="1.34.1">bioconductor-genomicfeatures</requirement>
+            <requirement type="package" version="1.20.2">r-getopt</requirement>
+            <requirement type="package" version="0.8.0">r-ggrepel</requirement>
+            <requirement type="package" version="3.0.1">r-gplots</requirement>
+            <requirement type="package" version="1.0.10">r-pheatmap</requirement>
+            <requirement type="package" version="0.2.20">r-rjson</requirement>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">2.11.40.6</token>
+    <token name="@SUFFIX_VERSION@">2</token>
+    <xml name="edam_ontology">
+        <edam_topics>                                                                                  
+            <edam_topic>topic_3308</edam_topic>
+        </edam_topics>
+        <edam_operations>
+            <edam_operation>operation_3800</edam_operation>
+        </edam_operations>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1186/s13059-014-0550-8</citation>
+        </citations>
+    </xml>
+    <xml name="xrefs">
+        <xrefs>
+          <xref type='bio.tools'>DESeq2</xref>
+        </xrefs>
+      </xml>
 </macros>
\ No newline at end of file