Mercurial > repos > iuc > deseq2
diff deseq2_macros.xml @ 31:9a882d108833 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 469558ddf5bc6249874fe5826637fd6ee81588cf
author | iuc |
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date | Tue, 18 Jul 2023 14:58:52 +0000 |
parents | 8fe98f7094de |
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--- a/deseq2_macros.xml Fri Aug 26 11:16:15 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,55 +0,0 @@ -<macros> - <xml name="factor_repeat"> - <repeat name="rep_factorName" title="Factor" min="1"> - <param name="factorName" type="text" value="FactorName" label="Specify a factor name, e.g. effects_drug_x or cancer_markers" - help="Only letters, numbers and underscores will be retained in this field"> - <sanitizer> - <valid initial="string.letters,string.digits"><add value="_" /></valid> - </sanitizer> - </param> - <repeat name="rep_factorLevel" title="Factor level" min="2" default="2"> - <param name="factorLevel" type="text" value="FactorLevel" label="Specify a factor level, typical values could be 'tumor', 'normal', 'treated' or 'control'" - help="Only letters, numbers and underscores will be retained in this field"> - <sanitizer> - <valid initial="string.letters,string.digits"><add value="_" /></valid> - </sanitizer> - </param> - <yield/> - </repeat> - </repeat> - </xml> - <xml name="requirements"> - <requirements> - <requirement type="package" version="1.34.0">bioconductor-deseq2</requirement> - <!-- Optional dependency of tximport, needed to import kallisto results https://github.com/galaxyproject/usegalaxy-playbook/issues/161 --> - <requirement type="package" version="2.38.0">bioconductor-rhdf5</requirement> - <requirement type="package" version="1.22.0">bioconductor-tximport</requirement> - <requirement type="package" version="1.46.1">bioconductor-genomicfeatures</requirement> - <requirement type="package" version="1.20.3">r-getopt</requirement> - <requirement type="package" version="0.9.1">r-ggrepel</requirement> - <requirement type="package" version="3.1.1">r-gplots</requirement> - <requirement type="package" version="1.0.12">r-pheatmap</requirement> - <requirement type="package" version="0.2.20">r-rjson</requirement> - </requirements> - </xml> - <token name="@TOOL_VERSION@">2.11.40.7</token> - <token name="@SUFFIX_VERSION@">2</token> - <xml name="edam_ontology"> - <edam_topics> - <edam_topic>topic_3308</edam_topic> - </edam_topics> - <edam_operations> - <edam_operation>operation_3800</edam_operation> - </edam_operations> - </xml> - <xml name="citations"> - <citations> - <citation type="doi">10.1186/s13059-014-0550-8</citation> - </citations> - </xml> - <xml name="xrefs"> - <xrefs> - <xref type='bio.tools'>DESeq2</xref> - </xrefs> - </xml> -</macros> \ No newline at end of file