diff deseq2_macros.xml @ 31:9a882d108833 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 469558ddf5bc6249874fe5826637fd6ee81588cf
author iuc
date Tue, 18 Jul 2023 14:58:52 +0000
parents 8fe98f7094de
children
line wrap: on
line diff
--- a/deseq2_macros.xml	Fri Aug 26 11:16:15 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-<macros>
-    <xml name="factor_repeat">
-        <repeat name="rep_factorName" title="Factor" min="1">
-            <param name="factorName" type="text" value="FactorName" label="Specify a factor name, e.g. effects_drug_x or cancer_markers"
-                help="Only letters, numbers and underscores will be retained in this field">
-                <sanitizer>
-                    <valid initial="string.letters,string.digits"><add value="_" /></valid>
-                </sanitizer>
-            </param>
-            <repeat name="rep_factorLevel" title="Factor level" min="2" default="2">
-                <param name="factorLevel" type="text" value="FactorLevel" label="Specify a factor level, typical values could be 'tumor', 'normal', 'treated' or 'control'"
-                    help="Only letters, numbers and underscores will be retained in this field">
-                    <sanitizer>
-                        <valid initial="string.letters,string.digits"><add value="_" /></valid>
-                    </sanitizer>
-                </param>
-                <yield/>
-            </repeat>
-        </repeat>
-    </xml>
-    <xml name="requirements">
-        <requirements>
-            <requirement type="package" version="1.34.0">bioconductor-deseq2</requirement>
-            <!-- Optional dependency of tximport, needed to import kallisto results https://github.com/galaxyproject/usegalaxy-playbook/issues/161 -->
-            <requirement type="package" version="2.38.0">bioconductor-rhdf5</requirement>
-            <requirement type="package" version="1.22.0">bioconductor-tximport</requirement>
-            <requirement type="package" version="1.46.1">bioconductor-genomicfeatures</requirement>
-            <requirement type="package" version="1.20.3">r-getopt</requirement>
-            <requirement type="package" version="0.9.1">r-ggrepel</requirement>
-            <requirement type="package" version="3.1.1">r-gplots</requirement>
-            <requirement type="package" version="1.0.12">r-pheatmap</requirement>
-            <requirement type="package" version="0.2.20">r-rjson</requirement>
-        </requirements>
-    </xml>
-    <token name="@TOOL_VERSION@">2.11.40.7</token>
-    <token name="@SUFFIX_VERSION@">2</token>
-    <xml name="edam_ontology">
-        <edam_topics>                                                                                  
-            <edam_topic>topic_3308</edam_topic>
-        </edam_topics>
-        <edam_operations>
-            <edam_operation>operation_3800</edam_operation>
-        </edam_operations>
-    </xml>
-    <xml name="citations">
-        <citations>
-            <citation type="doi">10.1186/s13059-014-0550-8</citation>
-        </citations>
-    </xml>
-    <xml name="xrefs">
-        <xrefs>
-          <xref type='bio.tools'>DESeq2</xref>
-        </xrefs>
-      </xml>
-</macros>
\ No newline at end of file