# HG changeset patch # User iuc # Date 1449096045 18000 # Node ID afe2a77c5900219733cd52c124384e7c41ac6249 # Parent 89bbd1dbf48dd48129f45da6e4febc2a586fbfc5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa diff -r 89bbd1dbf48d -r afe2a77c5900 deseq2.xml --- a/deseq2.xml Wed Oct 14 03:25:12 2015 -0400 +++ b/deseq2.xml Wed Dec 02 17:40:45 2015 -0500 @@ -1,4 +1,4 @@ - + Determines differentially expressed features from count tables @@ -41,6 +41,7 @@ #end for $temp_factor.append( {str($level.factorLevel): $count_files} ) #end for + $temp_factor.reverse() $temp_factor_names.append([str($factor.factorName), $temp_factor]) #end for -f '#echo json.dumps(temp_factor_names)#' @@ -170,8 +171,9 @@ 2 mean normalised counts, averaged over all samples from both conditions 3 the logarithm (to basis 2) of the fold change (See the note in inputs section) 4 standard error estimate for the log2 fold change estimate - 5 p value for the statistical significance of this change - 6 p value adjusted for multiple testing with the Benjamini-Hochberg procedure + 5 Wald statistic + 6 p value for the statistical significance of this change + 7 p value adjusted for multiple testing with the Benjamini-Hochberg procedure which controls false discovery rate (FDR) ====== ========================================================== diff -r 89bbd1dbf48d -r afe2a77c5900 tool_dependencies.xml --- a/tool_dependencies.xml Wed Oct 14 03:25:12 2015 -0400 +++ b/tool_dependencies.xml Wed Dec 02 17:40:45 2015 -0500 @@ -1,6 +1,6 @@ - +