Mercurial > repos > iuc > deseq2
changeset 6:4939397c4706 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 3bc8d91ee546682ef8e9303bd1044bb14cf21b07
| author | iuc |
|---|---|
| date | Wed, 09 Nov 2016 17:00:31 -0500 |
| parents | d38fd393402e |
| children | cb23006f34ff |
| files | deseq2.R deseq2.xml test-data/deseq2_out.tab test-data/deseq2_out_filtered.tab test-data/deseq2_tximport_out.tab test-data/deseq2_tximport_out_filtered.tab test-data/genes_sub.gtf test-data/normalized_readcounts.tab test-data/sailfish_quant_result1.tab test-data/sailfish_quant_result2.tab test-data/sailfish_quant_result3.tab test-data/sailfish_quant_result4.tab |
| diffstat | 11 files changed, 15392 insertions(+), 3445 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/deseq2.R Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,373 @@ +#!/usr/bin/env Rscript + +# A command-line interface to DESeq2 for use with Galaxy +# written by Bjoern Gruening and modified by Michael Love 2016.03.30 +# +# one of these arguments is required: +# +# 'factors' a JSON list object from Galaxy +# +# 'sample_table' is a sample table as described in ?DESeqDataSetFromHTSeq +# with columns: sample name, filename, then factors (variables) +# +# the output file has columns: +# +# baseMean (mean normalized count) +# log2FoldChange (by default a moderated LFC estimate) +# lfcSE (the standard error) +# stat (the Wald statistic) +# pvalue (p-value from comparison of Wald statistic to a standard Normal) +# padj (adjusted p-value, Benjamini Hochberg correction on genes which pass the mean count filter) +# +# the first variable in 'factors' and first column in 'sample_table' will be the primary factor. +# the levels of the primary factor are used in the order of appearance in factors or in sample_table. +# +# by default, levels in the order A,B,C produces a single comparison of B vs A, to a single file 'outfile' +# +# for the 'many_contrasts' flag, levels in the order A,B,C produces comparisons C vs A, B vs A, C vs B, +# to a number of files using the 'outfile' prefix: 'outfile.condition_C_vs_A' etc. +# all plots will still be sent to a single PDF, named by the arg 'plots', with extra pages. +# +# fit_type is an integer valued argument, with the options from ?estimateDisperions +# 1 "parametric" +# 2 "local" +# 3 "mean" + +# setup R error handling to go to stderr +options( show.error.messages=F, error = function () { cat( geterrmessage(), file=stderr() ); q( "no", 1, F ) } ) + +# we need that to not crash galaxy with an UTF8 error on German LC settings. +loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") + +library("getopt") +library("tools") +options(stringAsFactors = FALSE, useFancyQuotes = FALSE) +args <- commandArgs(trailingOnly = TRUE) + +# get options, using the spec as defined by the enclosed list. +# we read the options from the default: commandArgs(TRUE). +spec <- matrix(c( + "quiet", "q", 0, "logical", + "help", "h", 0, "logical", + "outfile", "o", 1, "character", + "countsfile", "n", 1, "character", + "factors", "f", 1, "character", + "plots" , "p", 1, "character", + "sample_table", "s", 1, "character", + "tximport", "i", 0, "logical", + "tx2gene", "x", 1, "character", # a space-sep tx-to-gene map or GTF file (auto detect .gtf/.GTF) + "fit_type", "t", 1, "integer", + "many_contrasts", "m", 0, "logical", + "outlier_replace_off" , "a", 0, "logical", + "outlier_filter_off" , "b", 0, "logical", + "auto_mean_filter_off", "c", 0, "logical", + "beta_prior_off", "d", 0, "logical"), + byrow=TRUE, ncol=4) +opt <- getopt(spec) + +# if help was asked for print a friendly message +# and exit with a non-zero error code +if (!is.null(opt$help)) { + cat(getopt(spec, usage=TRUE)) + q(status=1) +} + +# enforce the following required arguments +if (is.null(opt$outfile)) { + cat("'outfile' is required\n") + q(status=1) +} +if (is.null(opt$sample_table) & is.null(opt$factors)) { + cat("'factors' or 'sample_table' is required\n") + q(status=1) +} + +verbose <- if (is.null(opt$quiet)) { + TRUE +} else { + FALSE +} + +if (!is.null(opt$tximport)) { + if (is.null(opt$tx2gene)) stop("A transcript-to-gene map or a GTF file is required for tximport") + if (tolower(file_ext(opt$tx2gene)) == "gtf") { + gtfFile <- opt$tx2gene + } else { + gtfFile <- NULL + tx2gene <- read.table(opt$tx2gene, header=FALSE) + } + useTXI <- TRUE +} else { + useTXI <- FALSE +} + +suppressPackageStartupMessages({ + library("DESeq2") + library("RColorBrewer") + library("gplots") +}) + +# build or read sample table + +trim <- function (x) gsub("^\\s+|\\s+$", "", x) + +# switch on if 'factors' was provided: +if (!is.null(opt$factors)) { + library("rjson") + parser <- newJSONParser() + parser$addData(opt$factors) + factorList <- parser$getObject() + factors <- sapply(factorList, function(x) x[[1]]) + primaryFactor <- factors[1] + filenamesIn <- unname(unlist(factorList[[1]][[2]])) + sampleTable <- data.frame(sample=basename(filenamesIn), + filename=filenamesIn, + row.names=filenamesIn, + stringsAsFactors=FALSE) + for (factor in factorList) { + factorName <- trim(factor[[1]]) + sampleTable[[factorName]] <- character(nrow(sampleTable)) + lvls <- sapply(factor[[2]], function(x) names(x)) + for (i in seq_along(factor[[2]])) { + files <- factor[[2]][[i]][[1]] + sampleTable[files,factorName] <- trim(lvls[i]) + } + sampleTable[[factorName]] <- factor(sampleTable[[factorName]], levels=lvls) + } + rownames(sampleTable) <- sampleTable$sample +} else { + # read the sample_table argument + # this table is described in ?DESeqDataSet + # one column for the sample name, one for the filename, and + # the remaining columns for factors in the analysis + sampleTable <- read.delim(opt$sample_table, stringsAsFactors=FALSE) + factors <- colnames(sampleTable)[-c(1:2)] + for (factor in factors) { + lvls <- unique(as.character(sampleTable[[factor]])) + sampleTable[[factor]] <- factor(sampleTable[[factor]], levels=lvls) + } +} + +primaryFactor <- factors[1] +designFormula <- as.formula(paste("~", paste(rev(factors), collapse=" + "))) + +if (verbose) { + cat("DESeq2 run information\n\n") + cat("sample table:\n") + print(sampleTable[,-c(1:2),drop=FALSE]) + cat("\ndesign formula:\n") + print(designFormula) + cat("\n\n") +} + +# these are plots which are made once for each analysis +generateGenericPlots <- function(dds, factors) { + rld <- rlog(dds) + d=plotPCA(rld, intgroup=rev(factors), returnData=TRUE) + labs <- paste0(seq_len(ncol(dds)), ": ", do.call(paste, as.list(colData(dds)[factors]))) + library(ggplot2) + print(ggplot(d, aes(x=PC1,y=PC2, col=group,label=factor(labs)), environment = environment()) + geom_point() + geom_text(size=3)) + dat <- assay(rld) + colnames(dat) <- labs + distsRL <- dist(t(dat)) + mat <- as.matrix(distsRL) + hc <- hclust(distsRL) + hmcol <- colorRampPalette(brewer.pal(9, "GnBu"))(100) + heatmap.2(mat, Rowv=as.dendrogram(hc), symm=TRUE, trace="none", col = rev(hmcol), + main="Sample-to-sample distances", margin=c(13,13)) + plotDispEsts(dds, main="Dispersion estimates") +} + +# these are plots which can be made for each comparison, e.g. +# once for C vs A and once for B vs A +generateSpecificPlots <- function(res, threshold, title_suffix) { + use <- res$baseMean > threshold + if (sum(!use) == 0) { + h <- hist(res$pvalue, breaks=0:50/50, plot=FALSE) + barplot(height = h$counts, + col = "powderblue", space = 0, xlab="p-values", ylab="frequency", + main=paste("Histogram of p-values for",title_suffix)) + text(x = c(0, length(h$counts)), y = 0, label=paste(c(0,1)), adj=c(0.5,1.7), xpd=NA) + } else { + h1 <- hist(res$pvalue[!use], breaks=0:50/50, plot=FALSE) + h2 <- hist(res$pvalue[use], breaks=0:50/50, plot=FALSE) + colori <- c("filtered (low count)"="khaki", "not filtered"="powderblue") + barplot(height = rbind(h1$counts, h2$counts), beside = FALSE, + col = colori, space = 0, xlab="p-values", ylab="frequency", + main=paste("Histogram of p-values for",title_suffix)) + text(x = c(0, length(h1$counts)), y = 0, label=paste(c(0,1)), adj=c(0.5,1.7), xpd=NA) + legend("topright", fill=rev(colori), legend=rev(names(colori)), bg="white") + } + plotMA(res, main= paste("MA-plot for",title_suffix), ylim=range(res$log2FoldChange, na.rm=TRUE)) +} + +if (verbose) { + cat(paste("primary factor:",primaryFactor,"\n")) + if (length(factors) > 1) { + cat(paste("other factors in design:",paste(factors[-length(factors)],collapse=","),"\n")) + } + cat("\n---------------------\n") +} + +# if JSON input from Galaxy, path is absolute +# otherwise, from sample_table, assume it is relative +dir <- if (is.null(opt$factors)) { + "." +} else { + "" +} + +if (!useTXI) { + # construct the object from HTSeq files + dds <- DESeqDataSetFromHTSeqCount(sampleTable = sampleTable, + directory = dir, + design = designFormula) +} else { + # construct the object using tximport + # first need to make the tx2gene table + # this takes ~2-3 minutes using Bioconductor functions + if (!is.null(gtfFile)) { + suppressPackageStartupMessages({ + library("GenomicFeatures") + }) + txdb <- makeTxDbFromGFF(gtfFile, format="gtf") + k <- keys(txdb, keytype = "GENEID") + df <- select(txdb, keys = k, keytype = "GENEID", columns = "TXNAME") + tx2gene <- df[, 2:1] # tx ID, then gene ID + } + library("tximport") + txiFiles <- as.character(sampleTable[,2]) + names(txiFiles) <- as.character(sampleTable[,1]) + txi <- tximport(txiFiles, type="sailfish", tx2gene=tx2gene) + dds <- DESeqDataSetFromTximport(txi, + sampleTable[,3:ncol(sampleTable),drop=FALSE], + designFormula) +} + +if (verbose) cat(paste(ncol(dds), "samples with counts over", nrow(dds), "genes\n")) +# optional outlier behavior +if (is.null(opt$outlier_replace_off)) { + minRep <- 7 +} else { + minRep <- Inf + if (verbose) cat("outlier replacement off\n") +} +if (is.null(opt$outlier_filter_off)) { + cooksCutoff <- TRUE +} else { + cooksCutoff <- FALSE + if (verbose) cat("outlier filtering off\n") +} + +# optional automatic mean filtering +if (is.null(opt$auto_mean_filter_off)) { + independentFiltering <- TRUE +} else { + independentFiltering <- FALSE + if (verbose) cat("automatic filtering on the mean off\n") +} + +# shrinkage of LFCs +if (is.null(opt$beta_prior_off)) { + betaPrior <- TRUE +} else { + betaPrior <- FALSE + if (verbose) cat("beta prior off\n") +} + +# dispersion fit type +if (is.null(opt$fit_type)) { + fitType <- "parametric" +} else { + fitType <- c("parametric","local","mean")[opt$fit_type] +} + +if (verbose) cat(paste("using disperion fit type:",fitType,"\n")) + +# run the analysis +dds <- DESeq(dds, fitType=fitType, betaPrior=betaPrior, minReplicatesForReplace=minRep) + +# create the generic plots and leave the device open +if (!is.null(opt$plots)) { + if (verbose) cat("creating plots\n") + pdf(opt$plots) + generateGenericPlots(dds, factors) +} + +n <- nlevels(colData(dds)[[primaryFactor]]) +allLevels <- levels(colData(dds)[[primaryFactor]]) + +if (!is.null(opt$countsfile)) { + labs <- paste0(seq_len(ncol(dds)), ": ", do.call(paste, as.list(colData(dds)[factors]))) + normalizedCounts<-counts(dds,normalized=TRUE) + colnames(normalizedCounts)<-labs + write.table(normalizedCounts, file=opt$countsfile, sep="\t", col.names=NA, quote=FALSE) +} + +if (is.null(opt$many_contrasts)) { + # only contrast the first and second level of the primary factor + ref <- allLevels[1] + lvl <- allLevels[2] + res <- results(dds, contrast=c(primaryFactor, lvl, ref), + cooksCutoff=cooksCutoff, + independentFiltering=independentFiltering) + if (verbose) { + cat("summary of results\n") + cat(paste0(primaryFactor,": ",lvl," vs ",ref,"\n")) + print(summary(res)) + } + resSorted <- res[order(res$padj),] + outDF <- as.data.frame(resSorted) + outDF$geneID <- rownames(outDF) + outDF <- outDF[,c("geneID", "baseMean", "log2FoldChange", "lfcSE", "stat", "pvalue", "padj")] + filename <- opt$outfile + write.table(outDF, file=filename, sep="\t", quote=FALSE, row.names=FALSE, col.names=FALSE) + if (independentFiltering) { + threshold <- unname(attr(res, "filterThreshold")) + } else { + threshold <- 0 + } + title_suffix <- paste0(primaryFactor,": ",lvl," vs ",ref) + if (!is.null(opt$plots)) { + generateSpecificPlots(res, threshold, title_suffix) + } +} else { + # rotate through the possible contrasts of the primary factor + # write out a sorted table of results with the contrast as a suffix + # add contrast specific plots to the device + for (i in seq_len(n-1)) { + ref <- allLevels[i] + contrastLevels <- allLevels[(i+1):n] + for (lvl in contrastLevels) { + res <- results(dds, contrast=c(primaryFactor, lvl, ref), + cooksCutoff=cooksCutoff, + independentFiltering=independentFiltering) + resSorted <- res[order(res$padj),] + outDF <- as.data.frame(resSorted) + outDF$geneID <- rownames(outDF) + outDF <- outDF[,c("geneID", "baseMean", "log2FoldChange", "lfcSE", "stat", "pvalue", "padj")] + filename <- paste0(opt$outfile,".",primaryFactor,"_",lvl,"_vs_",ref) + write.table(outDF, file=filename, sep="\t", quote=FALSE, row.names=FALSE, col.names=FALSE) + if (independentFiltering) { + threshold <- unname(attr(res, "filterThreshold")) + } else { + threshold <- 0 + } + title_suffix <- paste0(primaryFactor,": ",lvl," vs ",ref) + if (!is.null(opt$plots)) { + generateSpecificPlots(res, threshold, title_suffix) + } + } + } +} + +# close the plot device +if (!is.null(opt$plots)) { + cat("closing plot device\n") + dev.off() +} + +cat("Session information:\n\n") + +sessionInfo() +
--- a/deseq2.xml Thu Sep 22 05:49:52 2016 -0400 +++ b/deseq2.xml Wed Nov 09 17:00:31 2016 -0500 @@ -1,11 +1,7 @@ -<tool id="deseq2" name="DESeq2" version="2.1.8.4"> +<tool id="deseq2" name="DESeq2" version="2.11.38"> <description>Determines differentially expressed features from count tables</description> <requirements> - <!-- odering is crucial, otherwise R will override the ENV variables from deseq2 --> - <requirement type="package" version="1.20.0">r-getopt</requirement> - <requirement type="package" version="2.17.0">r-gplots</requirement> - <requirement type="package" version="0.2.15">r-rjson</requirement> - <requirement type="package" version="1.10.1">bioconductor-deseq2</requirement> + <requirement type="package" version="1.12.4">bioconductor-deseq2</requirement> </requirements> <stdio> <regex match="Execution halted" @@ -28,13 +24,23 @@ </version_command> <command> <![CDATA[ - R -e 'library(DESeq2); sink("DESEQ2_ROOT_PATH"); cat(file.path(find.package("DESeq2"),"script","deseq2.R"))' && + + #if $tximport.tximport_selector == 'tximport': + #if $tximport.mapping_format.mapping_format_selector == 'gtf': + ln -s '$tximport.mapping_format.gtf_file' mapping.gtf && + #else: + ln -s '$tximport.mapping_format.tabular_file' mapping.txt && + #end if + #end if #import json - Rscript \$(cat DESEQ2_ROOT_PATH) - -o "$deseq_out" + Rscript '${__tool_directory__}/deseq2.R' + -o '$deseq_out' #if $pdf: - -p "$plots" + -p '$plots' + #end if + #if $normCounts: + -n '$counts_out' #end if #set $temp_factor_names = list() #for $factor in $rep_factorName: @@ -50,7 +56,7 @@ $temp_factor_names.append([str($factor.factorName), $temp_factor]) #end for -f '#echo json.dumps(temp_factor_names)#' - -t "$fit_type" + -t '$fit_type' #if $outlier_replace_off: -a #end if @@ -63,18 +69,27 @@ #if $many_contrasts: -m #end if + #if $tximport.tximport_selector == 'tximport': + -i + #if $tximport.mapping_format.mapping_format_selector == 'gtf': + -x mapping.gtf + #else: + -x mapping.txt + #end if + + #end if ]]> </command> <inputs> <repeat name="rep_factorName" title="Factor" min="1"> - <param name="factorName" type="text" value="FactorName" label="Specify a factor name" + <param name="factorName" type="text" value="FactorName" label="Specify a factor name, e.g. effects_drug_x or cancer_markers" help="Only letters, numbers and underscores will be retained in this field"> <sanitizer> <valid initial="string.letters,string.digits"><add value="_" /></valid> </sanitizer> </param> <repeat name="rep_factorLevel" title="Factor level" min="2" default="2"> - <param name="factorLevel" type="text" value="FactorLevel" label="Specify a factor level" + <param name="factorLevel" type="text" value="FactorLevel" label="Specify a factor level, typical values could be 'tumor', 'normal', 'treated' or 'control'" help="Only letters, numbers and underscores will be retained in this field"> <sanitizer> <valid initial="string.letters,string.digits"><add value="_" /></valid> @@ -83,9 +98,33 @@ <param name="countsFile" type="data" format="tabular" multiple="true" label="Counts file(s)"/> </repeat> </repeat> + + <conditional name="tximport"> + <param name="tximport_selector" type="select" label="Choice of Input data"> + <option value="count" selected="True">Count data (e.g. from htseq-count or feature-count)</option> + <option value="tximport">TPM values (e.g. from sailfish or salmon)</option> + </param> + <when value="tximport"> + <conditional name="mapping_format"> + <param name="mapping_format_selector" type="select" label="Gene mapping format"> + <option value="gtf" selected="True">GTF</option> + <option value="tabular">Transcript-ID and Gene-ID mapping file</option> + </param> + <when value="gtf"> + <param name="gtf_file" type="data" format="gtf" label="GTF file with Transcript - Gene mapping"/> + </when> + <when value="tabular"> + <param name="tabular_file" type="data" format="tabular" label="Tabular file with Transcript - Gene mapping"/> + </when> + </conditional> + </when> + <when value="count" /> + </conditional> <param name="pdf" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Visualising the analysis results" help="output an additional PDF files" /> + <param name="normCounts" type="boolean" truevalue="1" falsevalue="0" checked="false" + label="Output normalized counts table" /> <param name="many_contrasts" type="boolean" truevalue="1" falsevalue="0" checked="false" label="Output all levels vs all levels of primary factor (use when you have >2 levels for primary factor)" help=" DESeq2 performs independent filtering by default using the mean of normalized counts as a filter statistic" /> @@ -110,6 +149,9 @@ <outputs> <data format="tabular" name="deseq_out" label="DESeq2 result file on ${on_string}"> <filter>many_contrasts is False</filter> + <actions> + <action name="column_names" type="metadata" default="GeneID,Base mean,log2(FC),StdErr,Wald-Stats,P-value,P-adj" /> + </actions> </data> <collection name="split_output" type="list" label="DESeq2 result files on ${on_string}"> <filter>many_contrasts is True</filter> @@ -118,6 +160,9 @@ <data format="pdf" name="plots" label="DESeq2 plots on ${on_string}"> <filter>pdf == True</filter> </data> + <data format="tabular" name="counts_out" label="Normalized counts file on ${on_string}"> + <filter>normCounts == True</filter> + </data> </outputs> <tests> <test> @@ -132,9 +177,28 @@ <param name="countsFile" value="GSM461176_untreat_single.counts,GSM461177_untreat_paired.counts,GSM461178_untreat_paired.counts,GSM461182_untreat_single.counts"/> </repeat> </repeat> - <param name="pdf" value="no"/> - <output name="deseq_out" file="deseq2_out.tab" compare="sim_size" delta="1000"/> - <output name="deseq_out_filtered" file="deseq2_out_filtered.tab" compare="sim_size" delta="1000"/> + <param name="pdf" value="False"/> + <param name="normCounts" value="True"/> + <output name="counts_out" file="normalized_readcounts.tab"/> + <output name="deseq_out" file="deseq2_out.tab"/> + </test> + <test> + <repeat name="rep_factorName"> + <param name="factorName" value="Treatment"/> + <repeat name="rep_factorLevel"> + <param name="factorLevel" value="Treated"/> + <param name="countsFile" value="sailfish_quant_result1.tab,sailfish_quant_result2.tab"/> + </repeat> + <repeat name="rep_factorLevel"> + <param name="factorLevel" value="Untreated"/> + <param name="countsFile" value="sailfish_quant_result3.tab,sailfish_quant_result4.tab"/> + </repeat> + </repeat> + <param name="pdf" value="False"/> + <param name="tximport_selector" value="tximport"/> + <param name="mapping_format_selector" value="gtf"/> + <param name="gtf_file" value="genes_sub.gtf"/> + <output name="deseq_out" file="deseq2_tximport_out.tab"/> </test> </tests> <help>
--- a/test-data/deseq2_out.tab Thu Sep 22 05:49:52 2016 -0400 +++ b/test-data/deseq2_out.tab Wed Nov 09 17:00:31 2016 -0500 @@ -1,3179 +1,3179 @@ -FBgn0003360 1933.95040021558 -2.83931225259512 0.131427106250417 -21.6037036316175 1.65776764506556e-103 4.8042106354e-100 -FBgn0029167 1648.81894046778 -2.12846961402501 0.111026270383108 -19.1708647573273 6.48222732792777e-82 9.39274739816734e-79 -FBgn0025111 655.359768612902 2.56442932254547 0.137667337786547 18.6277250928003 1.91492266642432e-77 1.84981529576589e-74 -FBgn0029896 211.4755450268 -2.08777266242928 0.146415559688566 -14.259226730206 3.92782602934154e-46 2.84570995825794e-43 -FBgn0000071 151.249383869297 2.07788820686474 0.168180792411128 12.3550863155956 4.57265091805509e-35 2.65030847210473e-32 -FBgn0027279 1317.42349329018 -1.15789518800581 0.0979487486398482 -11.8214393147923 3.02457627375306e-32 1.46087034022273e-29 -FBgn0023479 1361.36610109448 -1.42278093472624 0.123382435239163 -11.5314706827462 9.15659861926778e-31 3.79083182837686e-28 -FBgn0026562 20055.4860668702 -1.89651458906925 0.165538620287047 -11.4566291888905 2.17828498754631e-30 7.89083736738651e-28 -FBgn0003501 116.651152955291 1.80587013415947 0.166034666709106 10.8764643550215 1.4923989382969e-27 4.80552458131602e-25 -FBgn0001224 272.471006012668 1.32281610420226 0.134495231954035 9.83541263867513 7.92420868827822e-23 2.29643567786303e-20 -FBgn0001226 617.110611842554 1.45833378003199 0.148670311493448 9.80917955563887 1.02800965013455e-22 2.70833815099084e-20 -FBgn0011260 80.9068053807535 1.72804169137515 0.182772479814818 9.45460549162528 3.24242333829425e-21 7.83045236198062e-19 -FBgn0001137 215.314997012827 -1.29233946143563 0.145480311328745 -8.88326021323463 6.49288454986043e-19 1.4474138019612e-16 -FBgn0003137 2007.00068863624 0.88961461517836 0.104287926638967 8.53037013822416 1.45880207669652e-17 3.01972029876181e-15 -FBgn0002527 17292.4505923723 -0.73741537684446 0.0906423933125779 -8.13543585837923 4.10458911152738e-16 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0.603903017085169 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0003916 0 NA NA NA NA NA FBgn0003920 0 NA NA NA NA NA FBgn0003922 0 NA NA NA NA NA FBgn0003923 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0003931 0.100529782041548 -0.0209903901435717 0.0404598159839989 -0.518795986414596 0.60390301708516 NA FBgn0003933 0 NA NA NA NA NA FBgn0003934 0 NA NA NA NA NA @@ -3118,11 +9207,63 @@ FBgn0004168 0.329924865175228 -0.00567773093616631 0.0525661604920174 -0.108011140304389 0.913986855226904 NA FBgn0004170 0 NA NA NA NA NA FBgn0004171 0.34051123448836 0.0191317511185581 0.0530946925055979 0.360332647496565 0.718598387609319 NA +======= +FBgn0003931 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0003933 0 NA NA NA NA NA +FBgn0003934 0 NA NA NA NA NA +FBgn0003935 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0003936 0 NA NA NA NA NA +FBgn0003938 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0003944 0 NA NA NA NA NA +FBgn0003965 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0003979 0.445863748838278 0.0419160811715145 0.0657973324877663 0.637048335953557 0.524093359442591 NA +FBgn0003980 0 NA NA NA NA NA +FBgn0003983 0.286744367017713 0.0224442132897042 0.0578510287325479 0.387965672891773 0.698041436892705 NA +FBgn0003986 0.546393530879826 0.02557012012303 0.0764427566946719 0.334500235583632 0.738002113155225 NA +FBgn0004003 0.99623133770796 -0.00103955335797677 0.0965980249523901 -0.0107616419537473 0.991413617772228 NA +FBgn0004009 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0004052 1.18482963050858 -0.0058161301744812 0.085245996399304 -0.0682276050506541 0.945604452513852 NA +FBgn0004053 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0004054 0 NA NA NA NA NA +FBgn0004102 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0004117 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0004143 0 NA NA NA NA NA +FBgn0004168 0.329924865175228 -0.00567773093566639 0.0525661604824935 -0.108011140314448 0.913986855218924 NA +FBgn0004170 0 NA NA NA NA NA +FBgn0004171 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +>>>>>>> add new deseq2 +======= +FBgn0003931 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0003933 0 NA NA NA NA NA +FBgn0003934 0 NA NA NA NA NA +FBgn0003935 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0003936 0 NA NA NA NA NA +FBgn0003938 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0003944 0 NA NA NA NA NA +FBgn0003965 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0003979 0.445863748838278 0.0419160811715145 0.0657973324877663 0.637048335953557 0.524093359442591 NA +FBgn0003980 0 NA NA NA NA NA +FBgn0003983 0.286744367017713 0.0224442132897042 0.0578510287325479 0.387965672891773 0.698041436892705 NA +FBgn0003986 0.546393530879826 0.02557012012303 0.0764427566946719 0.334500235583632 0.738002113155225 NA +FBgn0004003 0.99623133770796 -0.00103955335797677 0.0965980249523901 -0.0107616419537473 0.991413617772228 NA +FBgn0004009 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0004052 1.18482963050858 -0.0058161301744812 0.085245996399304 -0.0682276050506541 0.945604452513852 NA +FBgn0004053 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0004054 0 NA NA NA NA NA +FBgn0004102 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0004117 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0004143 0 NA NA NA NA NA +FBgn0004168 0.329924865175228 -0.00567773093566639 0.0525661604824935 -0.108011140314448 0.913986855218924 NA +FBgn0004170 0 NA NA NA NA NA +FBgn0004171 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +>>>>>>> add new deseq2 FBgn0004172 0 NA NA NA NA NA FBgn0004173 0 NA NA NA NA NA FBgn0004174 0 NA NA NA NA NA FBgn0004175 0 NA NA NA NA NA FBgn0004181 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0004183 0.491649006427722 0.0280898964765392 0.0694601139539725 0.404403259331721 0.685916203816431 NA FBgn0004185 0 NA NA NA NA NA FBgn0004186 0 NA NA NA NA NA @@ -3136,17 +9277,55 @@ FBgn0004242 0.281921634709344 -0.0120155177230671 0.0507652657600726 -0.236687773483843 0.812899020834071 NA FBgn0004244 0.181391852667795 0.000922878063802334 0.043122754627709 0.0214011853317304 0.982925628025152 NA FBgn0004366 0.517559680331406 0.00547295680064826 0.0605811033207483 0.0903409891971022 0.928016248632263 NA +======= +FBgn0004183 0.491649006427722 0.028089896475562 0.0694601139526983 0.40440325932507 0.685916203821321 NA +FBgn0004185 0 NA NA NA NA NA +FBgn0004186 0 NA NA NA NA NA +FBgn0004187 0 NA NA NA NA NA +FBgn0004188 0.303080193998586 0.02172250164421 0.0523453823055393 0.41498410532979 0.67815353888572 NA +FBgn0004189 0 NA NA NA NA NA +FBgn0004190 0 NA NA NA NA NA +FBgn0004192 0 NA NA NA NA NA +======= +FBgn0004183 0.491649006427722 0.028089896475562 0.0694601139526983 0.40440325932507 0.685916203821321 NA +FBgn0004185 0 NA NA NA NA NA +FBgn0004186 0 NA NA NA NA NA +FBgn0004187 0 NA NA NA NA NA +FBgn0004188 0.303080193998586 0.02172250164421 0.0523453823055393 0.41498410532979 0.67815353888572 NA +FBgn0004189 0 NA NA NA NA NA +FBgn0004190 0 NA NA NA NA NA +FBgn0004192 0 NA NA NA NA NA +>>>>>>> add new deseq2 +FBgn0004228 0.201059564083097 -0.0269982590828114 0.0435597151872736 -0.619798797277243 0.535390260618051 NA +FBgn0004240 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0004242 0.281921634709344 -0.0120155177192691 0.050765265751978 -0.236687773446768 0.812899020862835 NA +FBgn0004244 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0004366 0.517559680331406 0.0054729567983344 0.060581103305301 0.0903409891819435 0.928016248644309 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0004372 0 NA NA NA NA NA FBgn0004389 0 NA NA NA NA NA FBgn0004394 0 NA NA NA NA NA FBgn0004407 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0004414 0.627255601506073 0.0480868703717358 0.0868415398788798 0.553731203279028 0.579762817169926 NA +======= +FBgn0004414 0.627255601506073 0.0480868703822077 0.0868415398920367 0.553731203315721 0.57976281714481 NA +>>>>>>> add new deseq2 +======= +FBgn0004414 0.627255601506073 0.0480868703822077 0.0868415398920367 0.553731203315721 0.57976281714481 NA +>>>>>>> add new deseq2 FBgn0004425 0 NA NA NA NA NA FBgn0004426 0 NA NA NA NA NA FBgn0004427 0 NA NA NA NA NA FBgn0004428 0 NA NA NA NA NA FBgn0004429 0 NA NA NA NA NA FBgn0004430 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0004431 1.1378451943466 0.0923785691809631 0.109048494552655 0.847132916047342 0.396921039969214 NA FBgn0004513 0.660056238130762 -0.0609416051004168 0.083472311816175 -0.730081673485025 0.465340262778683 NA FBgn0004514 0.409860210442104 0.0674785682807887 0.0610080667682715 1.1060597697202 0.268700650078596 NA @@ -3161,12 +9340,43 @@ FBgn0004579 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA FBgn0004580 1.15057201141881 0.0711332059672183 0.0995199791979814 0.714763071098603 0.474755457677638 NA FBgn0004588 0.100529782041548 -0.0209903901435717 0.0404598159839989 -0.518795986414596 0.60390301708516 NA +======= +FBgn0004431 1.1378451943466 0.0923785691966441 0.109048494560053 0.847132916133667 0.396921039921103 NA +FBgn0004513 0.660056238130762 -0.0609416051107179 0.0834723118226024 -0.730081673552215 0.465340262737615 NA +FBgn0004514 0.409860210442104 0.0674785682701168 0.0610080667631311 1.10605976963846 0.26870065011397 NA +FBgn0004516 0.45998160294271 0.0259764573411749 0.0756216028486382 0.343505775633565 0.731217996549407 NA +FBgn0004552 1.20304763137238 -0.00777458451283024 0.0963087287222203 -0.0807256477785537 0.935660139399957 NA +FBgn0004554 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0004567 0.622432869197703 0.00386346886767305 0.0807339334972197 0.0478543370837505 0.961832331394984 NA +FBgn0004572 0 NA NA NA NA NA +======= +FBgn0004431 1.1378451943466 0.0923785691966441 0.109048494560053 0.847132916133667 0.396921039921103 NA +FBgn0004513 0.660056238130762 -0.0609416051107179 0.0834723118226024 -0.730081673552215 0.465340262737615 NA +FBgn0004514 0.409860210442104 0.0674785682701168 0.0610080667631311 1.10605976963846 0.26870065011397 NA +FBgn0004516 0.45998160294271 0.0259764573411749 0.0756216028486382 0.343505775633565 0.731217996549407 NA +FBgn0004552 1.20304763137238 -0.00777458451283024 0.0963087287222203 -0.0807256477785537 0.935660139399957 NA +FBgn0004554 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0004567 0.622432869197703 0.00386346886767305 0.0807339334972197 0.0478543370837505 0.961832331394984 NA +FBgn0004572 0 NA NA NA NA NA +>>>>>>> add new deseq2 +FBgn0004573 1.17327978355101 -0.0148784490593008 0.0930646782720512 -0.159872137695543 0.872981797079874 NA +FBgn0004575 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0004577 1.02627891065609 0.0277758126461186 0.0823788862180254 0.337171500141512 0.735987620265745 NA +FBgn0004579 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0004580 1.15057201141881 0.0711332059588908 0.0995199791928059 0.714763071052098 0.474755457706379 NA +FBgn0004588 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0004589 0 NA NA NA NA NA FBgn0004590 0 NA NA NA NA NA FBgn0004591 0 NA NA NA NA NA FBgn0004592 0 NA NA NA NA NA FBgn0004593 0 NA NA NA NA NA FBgn0004594 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0004618 0.186214584976165 0.0356964168384409 0.0446847971135243 0.798849253981217 0.424377826807215 NA FBgn0004619 0.747402163340835 -0.0683424148193181 0.085736719712451 -0.797119542811167 0.425381607428679 NA FBgn0004620 0 NA NA NA NA NA @@ -3174,6 +9384,20 @@ FBgn0004623 0.869841813384814 0.103582718707797 0.099486720591767 1.04117130499092 0.297796050818843 NA FBgn0004649 0.316057543049755 0.0424894745975222 0.0484365857509229 0.87721861355004 0.380367907855983 NA FBgn0004666 0.105352514349918 0.0254741503092245 0.0405830500415472 0.627704183967078 0.530197743974526 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0004618 0.186214584976165 0.035696416837727 0.0446847971128721 0.7988492539769 0.424377826809718 NA +FBgn0004619 0.747402163340835 -0.0683424148248785 0.085736719715521 -0.797119542847478 0.425381607407593 NA +FBgn0004620 0 NA NA NA NA NA +FBgn0004622 0.361798776440546 -0.045723035233673 0.0562166342072231 -0.813336406180614 0.416025209323621 NA +FBgn0004623 0.869841813384814 0.103582718733184 0.099486720604188 1.04117130511611 0.297796050760754 NA +FBgn0004649 0.316057543049755 0.0424894745649577 0.0484365857320549 0.877218613219439 0.380367908035517 NA +FBgn0004666 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0004777 0 NA NA NA NA NA FBgn0004778 0 NA NA NA NA NA FBgn0004779 0 NA NA NA NA NA @@ -3182,6 +9406,8 @@ FBgn0004782 0 NA NA NA NA NA FBgn0004783 0 NA NA NA NA NA FBgn0004784 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0004795 1.06947387537431 0.0348407538425861 0.101534924736097 0.343140588651069 0.731492697414405 NA FBgn0004841 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA FBgn0004842 0 NA NA NA NA NA @@ -3210,10 +9436,47 @@ FBgn0005775 0.526725819464525 0.0664631590161508 0.077185986841064 0.86107804973728 0.389195057651819 NA FBgn0005778 0 NA NA NA NA NA FBgn0005779 0.269423611141796 -0.0265926243080571 0.0432208120596076 -0.615273592531813 0.53837405408732 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0004795 1.06947387537431 0.0348407538425108 0.101534924735579 0.343140588652075 0.731492697413648 NA +FBgn0004841 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0004842 0 NA NA NA NA NA +FBgn0004854 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0004862 0 NA NA NA NA NA +FBgn0004863 0.291567099326083 0.0536935603590554 0.0545425422559354 0.984434500817798 0.32490192153756 NA +FBgn0004880 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0004892 0 NA NA NA NA NA +FBgn0004895 0.350285681768043 -0.0117894018140941 0.0534498779374822 -0.220569293495556 0.825427812437106 NA +FBgn0004897 0 NA NA NA NA NA +FBgn0004898 0 NA NA NA NA NA +FBgn0004910 0.625791347127407 -0.02271123722712 0.0746079393664722 -0.304407780458364 0.760817240939832 NA +FBgn0004911 0 NA NA NA NA NA +FBgn0004956 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0004959 0.515212724792022 0.10242646644384 0.0748243786072447 1.36889164133898 0.171033148951157 NA +FBgn0005390 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0005391 0.580658421883181 -0.00372445998696613 0.0712249153412484 -0.0522915326627168 0.958296400044357 NA +FBgn0005511 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0005590 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0005626 1.40653167611223 -0.0772238091845741 0.122855114333695 -0.6285762672836 0.529626501640506 NA +FBgn0005633 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0005654 0 NA NA NA NA NA +FBgn0005658 0 NA NA NA NA NA +FBgn0005659 0.47270842001492 0.00796294654279172 0.0589483559655663 0.135083437228396 0.892545905319832 NA +FBgn0005664 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0005775 0.526725819464525 0.0664631590294446 0.0771859868496556 0.861078049813664 0.389195057609753 NA +FBgn0005778 0 NA NA NA NA NA +FBgn0005779 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0008636 0 NA NA NA NA NA FBgn0008646 0 NA NA NA NA NA FBgn0008651 0 NA NA NA NA NA FBgn0010019 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0010109 0.508198613102487 0.0258487787623506 0.0629652427238493 0.410524563142196 0.681421188656297 NA FBgn0010197 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA FBgn0010218 0.22457235082531 -0.0256917338023628 0.0424593607473281 -0.605089981341265 0.545119210714508 NA @@ -3266,12 +9529,128 @@ FBgn0011758 0 NA NA NA NA NA FBgn0011761 0.784636335933819 0.0697484049566564 0.0876545210330366 0.795719423649221 0.426195134536454 NA FBgn0011812 0.105352514349918 0.0254741503092245 0.0405830500415472 0.627704183967078 0.530197743974526 NA +======= +FBgn0010109 0.508198613102487 0.02584877874737 0.0629652427051789 0.410524563026006 0.681421188741511 NA +FBgn0010197 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0010218 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0010294 0 NA NA NA NA NA +FBgn0010295 0 NA NA NA NA NA +FBgn0010296 0 NA NA NA NA NA +FBgn0010323 0.316947516124059 -0.0419869150473819 0.0539546813196688 -0.778188546766115 0.436457867801375 NA +FBgn0010357 0 NA NA NA NA NA +FBgn0010358 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0010359 0 NA NA NA NA NA +FBgn0010385 0.904833829390668 0.0125161592169758 0.0950650779843444 0.13165885393832 0.895254131930107 NA +FBgn0010401 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0010403 0.723441976722873 0.0110974237889939 0.0813434677004715 0.136426735947103 0.891483939039692 NA +FBgn0010414 0 NA NA NA NA NA +FBgn0010423 0.316947516124059 -0.0419869150473819 0.0539546813196688 -0.778188546766115 0.436457867801375 NA +FBgn0010424 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0010425 0 NA NA NA NA NA +FBgn0010431 0.653373147680216 0.0550718646222269 0.0774149628038649 0.71138527524394 0.47684552109392 NA +FBgn0010433 0 NA NA NA NA NA +FBgn0010452 0.467151290790464 -0.0241863816204035 0.0662343214720209 -0.365163877018359 0.714989081116791 NA +FBgn0010453 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0011239 0 NA NA NA NA NA +FBgn0011244 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0011270 0 NA NA NA NA NA +FBgn0011273 0 NA NA NA NA NA +FBgn0011277 0.197727679648668 0.00510333342853804 0.0440953007302779 0.115734179017263 0.907863217317896 NA +FBgn0011278 0 NA NA NA NA NA +FBgn0011279 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0011281 0 NA NA NA NA NA +FBgn0011282 0 NA NA NA NA NA +FBgn0011283 1.33308982531269 -0.065529915867961 0.104471106008773 -0.627253968790743 0.530492771684694 NA +FBgn0011293 0.186214584976165 0.035696416837727 0.0446847971128721 0.7988492539769 0.424377826809718 NA +FBgn0011294 0 NA NA NA NA NA +FBgn0011296 0.298257461690216 -0.0106322165454201 0.0583000724418707 -0.18237055461674 0.855291932296723 NA +FBgn0011554 0 NA NA NA NA NA +FBgn0011555 0 NA NA NA NA NA +FBgn0011556 0 NA NA NA NA NA +FBgn0011559 0.161724141252494 0.0323066554537033 0.0425491405669316 0.759278683969739 0.447685865955766 NA +FBgn0011569 0 NA NA NA NA NA +FBgn0011581 0.305434421451557 -0.00915534103909651 0.0511746194532775 -0.178903939822266 0.858013129167816 NA +FBgn0011582 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0011668 0 NA NA NA NA NA +FBgn0011669 0.765695749521016 0.0331173376178003 0.0687438537964264 0.481749797092723 0.629983696462845 NA +FBgn0011670 0.742132031156716 -0.0201299428543928 0.0747575712995207 -0.269269620514302 0.787722208395027 NA +FBgn0011693 0.516139450151393 0.0312688980504339 0.0704580731924012 0.443794396208469 0.657191240260754 NA +FBgn0011694 0 NA NA NA NA NA +FBgn0011701 0.52352291769304 -0.0098244405805537 0.0693450397595411 -0.141674741475679 0.887336927047167 NA +FBgn0011723 0 NA NA NA NA NA +FBgn0011743 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0011758 0 NA NA NA NA NA +FBgn0011761 0.784636335933819 0.0697484049656564 0.0876545210372003 0.795719423714099 0.426195134498736 NA +FBgn0011812 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +>>>>>>> add new deseq2 +======= +FBgn0010109 0.508198613102487 0.02584877874737 0.0629652427051789 0.410524563026006 0.681421188741511 NA +FBgn0010197 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0010218 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0010294 0 NA NA NA NA NA +FBgn0010295 0 NA NA NA NA NA +FBgn0010296 0 NA NA NA NA NA +FBgn0010323 0.316947516124059 -0.0419869150473819 0.0539546813196688 -0.778188546766115 0.436457867801375 NA +FBgn0010357 0 NA NA NA NA NA +FBgn0010358 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0010359 0 NA NA NA NA NA +FBgn0010385 0.904833829390668 0.0125161592169758 0.0950650779843444 0.13165885393832 0.895254131930107 NA +FBgn0010401 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0010403 0.723441976722873 0.0110974237889939 0.0813434677004715 0.136426735947103 0.891483939039692 NA +FBgn0010414 0 NA NA NA NA NA +FBgn0010423 0.316947516124059 -0.0419869150473819 0.0539546813196688 -0.778188546766115 0.436457867801375 NA +FBgn0010424 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0010425 0 NA NA NA NA NA +FBgn0010431 0.653373147680216 0.0550718646222269 0.0774149628038649 0.71138527524394 0.47684552109392 NA +FBgn0010433 0 NA NA NA NA NA +FBgn0010452 0.467151290790464 -0.0241863816204035 0.0662343214720209 -0.365163877018359 0.714989081116791 NA +FBgn0010453 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0011239 0 NA NA NA NA NA +FBgn0011244 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0011270 0 NA NA NA NA NA +FBgn0011273 0 NA NA NA NA NA +FBgn0011277 0.197727679648668 0.00510333342853804 0.0440953007302779 0.115734179017263 0.907863217317896 NA +FBgn0011278 0 NA NA NA NA NA +FBgn0011279 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0011281 0 NA NA NA NA NA +FBgn0011282 0 NA NA NA NA NA +FBgn0011283 1.33308982531269 -0.065529915867961 0.104471106008773 -0.627253968790743 0.530492771684694 NA +FBgn0011293 0.186214584976165 0.035696416837727 0.0446847971128721 0.7988492539769 0.424377826809718 NA +FBgn0011294 0 NA NA NA NA NA +FBgn0011296 0.298257461690216 -0.0106322165454201 0.0583000724418707 -0.18237055461674 0.855291932296723 NA +FBgn0011554 0 NA NA NA NA NA +FBgn0011555 0 NA NA NA NA NA +FBgn0011556 0 NA NA NA NA NA +FBgn0011559 0.161724141252494 0.0323066554537033 0.0425491405669316 0.759278683969739 0.447685865955766 NA +FBgn0011569 0 NA NA NA NA NA +FBgn0011581 0.305434421451557 -0.00915534103909651 0.0511746194532775 -0.178903939822266 0.858013129167816 NA +FBgn0011582 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0011668 0 NA NA NA NA NA +FBgn0011669 0.765695749521016 0.0331173376178003 0.0687438537964264 0.481749797092723 0.629983696462845 NA +FBgn0011670 0.742132031156716 -0.0201299428543928 0.0747575712995207 -0.269269620514302 0.787722208395027 NA +FBgn0011693 0.516139450151393 0.0312688980504339 0.0704580731924012 0.443794396208469 0.657191240260754 NA +FBgn0011694 0 NA NA NA NA NA +FBgn0011701 0.52352291769304 -0.0098244405805537 0.0693450397595411 -0.141674741475679 0.887336927047167 NA +FBgn0011723 0 NA NA NA NA NA +FBgn0011743 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0011758 0 NA NA NA NA NA +FBgn0011761 0.784636335933819 0.0697484049656564 0.0876545210372003 0.795719423714099 0.426195134498736 NA +FBgn0011812 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +>>>>>>> add new deseq2 FBgn0011822 0 NA NA NA NA NA FBgn0011832 0 NA NA NA NA NA FBgn0011834 0 NA NA NA NA NA FBgn0011840 0 NA NA NA NA NA FBgn0011844 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0011845 0.105352514349918 0.0254741503092245 0.0405830500415472 0.627704183967078 0.530197743974526 NA +======= +FBgn0011845 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +>>>>>>> add new deseq2 +======= +FBgn0011845 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +>>>>>>> add new deseq2 FBgn0011848 0 NA NA NA NA NA FBgn0011849 0 NA NA NA NA NA FBgn0011850 0 NA NA NA NA NA @@ -3280,8 +9659,18 @@ FBgn0011853 0 NA NA NA NA NA FBgn0011854 0 NA NA NA NA NA FBgn0011855 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0011858 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA FBgn0011859 0.361798776440546 -0.0457230352418696 0.0562166342122499 -0.813336406253691 0.416025209281734 NA +======= +FBgn0011858 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0011859 0.361798776440546 -0.045723035233673 0.0562166342072231 -0.813336406180614 0.416025209323621 NA +>>>>>>> add new deseq2 +======= +FBgn0011858 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0011859 0.361798776440546 -0.045723035233673 0.0562166342072231 -0.813336406180614 0.416025209323621 NA +>>>>>>> add new deseq2 FBgn0011860 0 NA NA NA NA NA FBgn0011861 0 NA NA NA NA NA FBgn0011862 0 NA NA NA NA NA @@ -3300,8 +9689,18 @@ FBgn0011879 0 NA NA NA NA NA FBgn0011880 0 NA NA NA NA NA FBgn0011881 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0011882 0.201059564083097 -0.0269982590830582 0.0435597151876689 -0.619798797277283 0.535390260618025 NA FBgn0011883 0.100529782041548 -0.0209903901435717 0.0404598159839989 -0.518795986414596 0.60390301708516 NA +======= +FBgn0011882 0.201059564083097 -0.0269982590828114 0.0435597151872736 -0.619798797277243 0.535390260618051 NA +FBgn0011883 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +>>>>>>> add new deseq2 +======= +FBgn0011882 0.201059564083097 -0.0269982590828114 0.0435597151872736 -0.619798797277243 0.535390260618051 NA +FBgn0011883 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +>>>>>>> add new deseq2 FBgn0011884 0 NA NA NA NA NA FBgn0011885 0 NA NA NA NA NA FBgn0011887 0 NA NA NA NA NA @@ -3314,7 +9713,15 @@ FBgn0011894 0 NA NA NA NA NA FBgn0011895 0 NA NA NA NA NA FBgn0011896 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0011897 0.22457235082531 -0.0256917338023628 0.0424593607473281 -0.605089981341265 0.545119210714508 NA +======= +FBgn0011897 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +>>>>>>> add new deseq2 +======= +FBgn0011897 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +>>>>>>> add new deseq2 FBgn0011902 0 NA NA NA NA NA FBgn0011904 0 NA NA NA NA NA FBgn0011905 0 NA NA NA NA NA @@ -3363,7 +9770,15 @@ FBgn0011977 0 NA NA NA NA NA FBgn0011980 0 NA NA NA NA NA FBgn0011981 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0011982 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA +======= +FBgn0011982 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 +======= +FBgn0011982 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 FBgn0011983 0 NA NA NA NA NA FBgn0011984 0 NA NA NA NA NA FBgn0011985 0 NA NA NA NA NA @@ -3380,9 +9795,21 @@ FBgn0012004 0 NA NA NA NA NA FBgn0012009 0 NA NA NA NA NA FBgn0012010 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0012011 0.22457235082531 -0.0256917338023628 0.0424593607473281 -0.605089981341265 0.545119210714508 NA FBgn0012016 0 NA NA NA NA NA FBgn0012017 0.100529782041548 -0.0209903901435717 0.0404598159839989 -0.518795986414596 0.60390301708516 NA +======= +FBgn0012011 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0012016 0 NA NA NA NA NA +FBgn0012017 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +>>>>>>> add new deseq2 +======= +FBgn0012011 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0012016 0 NA NA NA NA NA +FBgn0012017 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +>>>>>>> add new deseq2 FBgn0012018 0 NA NA NA NA NA FBgn0012024 0 NA NA NA NA NA FBgn0012025 0 NA NA NA NA NA @@ -3390,6 +9817,8 @@ FBgn0012027 0 NA NA NA NA NA FBgn0012028 0 NA NA NA NA NA FBgn0013275 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0013276 1.38349821485364 -0.0455623654904198 0.11052296781872 -0.412243413198523 0.680161019897493 NA FBgn0013277 0.201059564083097 -0.0269982590830582 0.0435597151876689 -0.619798797277283 0.535390260618025 NA FBgn0013279 0.6557201032196 -0.0207544837232391 0.0733571706560116 -0.282923721534485 0.777235310031925 NA @@ -3407,6 +9836,30 @@ FBgn0013681 0 NA NA NA NA NA FBgn0013682 49.1512095932707 0.0418332866398503 0.0883089598690068 0.473715087369432 NA NA FBgn0013683 1.06135572369289 0.0525795226270734 0.0824365934268494 0.63781775109048 0.523592322992044 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0013276 1.38349821485364 -0.0455623654904705 0.110522967818209 -0.41224341320089 0.680161019895758 NA +FBgn0013277 0.201059564083097 -0.0269982590828114 0.0435597151872736 -0.619798797277243 0.535390260618051 NA +FBgn0013279 0.6557201032196 -0.0207544837212112 0.0733571706464031 -0.282923721543898 0.777235310024709 NA +FBgn0013300 0 NA NA NA NA NA +FBgn0013301 0 NA NA NA NA NA +FBgn0013307 0 NA NA NA NA NA +FBgn0013308 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0013342 0.906959263338976 0.00279690304336392 0.0740990015466734 0.0377454889402553 0.969890606889792 NA +FBgn0013348 0.876318396055054 0.0197459915437385 0.094493016048427 0.208967735071752 0.834473426230199 NA +FBgn0013433 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0013467 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0013672 32.2343447251885 -0.0267178753349522 0.0794199813959866 -0.336412510621696 NA NA +FBgn0013673 0 NA NA NA NA NA +FBgn0013680 9.65311858025122 0.101631433685181 0.0903452976844543 1.12492222937983 NA NA +FBgn0013681 0 NA NA NA NA NA +FBgn0013682 49.1512095932707 0.0418332866394828 0.0883089598682318 0.473715087369429 NA NA +FBgn0013683 1.06135572369289 0.0525795226014897 0.0824365934025438 0.637817750968191 0.523592323071658 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0013685 0 NA NA NA NA NA FBgn0013688 0 NA NA NA NA NA FBgn0013689 0 NA NA NA NA NA @@ -3432,6 +9885,8 @@ FBgn0013709 0 NA NA NA NA NA FBgn0013710 0 NA NA NA NA NA FBgn0013725 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0013745 0.493995961967106 -0.0563027976751298 0.0621797631579823 -0.905484273590418 0.365208887619106 NA FBgn0013751 0 NA NA NA NA NA FBgn0013755 0.100529782041548 -0.0209903901435717 0.0404598159839989 -0.518795986414596 0.60390301708516 NA @@ -3449,17 +9904,70 @@ FBgn0014454 0 NA NA NA NA NA FBgn0014462 0 NA NA NA NA NA FBgn0014464 1.20211363409943 0.00541587777025424 0.114353848649847 0.0473606951947698 0.962225754538083 NA +======= +FBgn0013745 0.493995961967106 -0.0563027976570631 0.0621797631483412 -0.905484273440259 0.365208887698622 NA +FBgn0013751 0 NA NA NA NA NA +FBgn0013755 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0013767 0.434350654165775 0.0850494029471199 0.0685047423399069 1.24151117195831 0.214416973658156 NA +FBgn0013949 0.64854314345826 -0.0258182570866491 0.0871189299342566 -0.296356453254563 0.766957877615489 NA +FBgn0013973 0 NA NA NA NA NA +FBgn0014000 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0014019 0.526725819464525 0.0664631590294446 0.0771859868496556 0.861078049813664 0.389195057609753 NA +FBgn0014073 1.26448251818862 -0.0868873655050276 0.110069864157544 -0.789383780656484 0.42988773266975 NA +FBgn0014076 0 NA NA NA NA NA +FBgn0014143 0 NA NA NA NA NA +FBgn0014179 0.262253923294042 0.0146475296657137 0.0496259291203528 0.295158799549939 0.767872573809437 NA +FBgn0014368 0 NA NA NA NA NA +FBgn0014396 1.27542939612944 -0.050255797984213 0.0875157150466011 -0.574248841564654 0.565799422570707 NA +FBgn0014454 0 NA NA NA NA NA +FBgn0014462 0 NA NA NA NA NA +FBgn0014464 1.20211363409943 0.0054158777737311 0.114353848664274 0.0473606952191992 0.962225754518613 NA +>>>>>>> add new deseq2 +======= +FBgn0013745 0.493995961967106 -0.0563027976570631 0.0621797631483412 -0.905484273440259 0.365208887698622 NA +FBgn0013751 0 NA NA NA NA NA +FBgn0013755 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0013767 0.434350654165775 0.0850494029471199 0.0685047423399069 1.24151117195831 0.214416973658156 NA +FBgn0013949 0.64854314345826 -0.0258182570866491 0.0871189299342566 -0.296356453254563 0.766957877615489 NA +FBgn0013973 0 NA NA NA NA NA +FBgn0014000 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0014019 0.526725819464525 0.0664631590294446 0.0771859868496556 0.861078049813664 0.389195057609753 NA +FBgn0014073 1.26448251818862 -0.0868873655050276 0.110069864157544 -0.789383780656484 0.42988773266975 NA +FBgn0014076 0 NA NA NA NA NA +FBgn0014143 0 NA NA NA NA NA +FBgn0014179 0.262253923294042 0.0146475296657137 0.0496259291203528 0.295158799549939 0.767872573809437 NA +FBgn0014368 0 NA NA NA NA NA +FBgn0014396 1.27542939612944 -0.050255797984213 0.0875157150466011 -0.574248841564654 0.565799422570707 NA +FBgn0014454 0 NA NA NA NA NA +FBgn0014462 0 NA NA NA NA NA +FBgn0014464 1.20211363409943 0.0054158777737311 0.114353848664274 0.0473606952191992 0.962225754518613 NA +>>>>>>> add new deseq2 FBgn0014848 0 NA NA NA NA NA FBgn0014849 0 NA NA NA NA NA FBgn0014850 0 NA NA NA NA NA FBgn0014851 0 NA NA NA NA NA FBgn0014903 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0015001 0.740918308757009 -0.0437358423920967 0.0922856332159397 -0.473918213138971 0.635558230814844 NA FBgn0015008 0 NA NA NA NA NA FBgn0015011 0.186214584976165 0.0356964168384409 0.0446847971135243 0.798849253981217 0.424377826807215 NA FBgn0015032 1.11963173293629 0.0158297612538043 0.100824243349112 0.157003521454582 0.875242072803991 NA FBgn0015033 0.970157815732469 0.0789456371426417 0.0993910486862502 0.794293230488503 0.427024744058109 NA FBgn0015038 0.0923751652987496 -0.0204895043498917 0.0402731934859522 -0.508762841393214 0.610918468289372 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0015001 0.740918308757009 -0.0437358424029915 0.0922856332279479 -0.473918213195361 0.635558230774631 NA +FBgn0015008 0 NA NA NA NA NA +FBgn0015011 0.186214584976165 0.035696416837727 0.0446847971128721 0.7988492539769 0.424377826809718 NA +FBgn0015032 1.11963173293629 0.0158297612535023 0.100824243349365 0.157003521451192 0.875242072806662 NA +FBgn0015033 0.970157815732469 0.0789456371545001 0.0993910486927511 0.79429323055586 0.427024744018906 NA +FBgn0015038 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0015039 0 NA NA NA NA NA FBgn0015129 0 NA NA NA NA NA FBgn0015230 0 NA NA NA NA NA @@ -3467,6 +9975,8 @@ FBgn0015323 0 NA NA NA NA NA FBgn0015350 0 NA NA NA NA NA FBgn0015351 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0015380 1.36389597888759 0.100102488425104 0.0960364544383772 1.04233844335992 0.29725479488816 NA FBgn0015381 0.286744367017713 0.0224442132856972 0.0578510287274514 0.387965672856687 0.69804143691867 NA FBgn0015400 0 NA NA NA NA NA @@ -3494,10 +10004,70 @@ FBgn0016660 0 NA NA NA NA NA FBgn0016675 1.41602156457075 0.120974751480119 0.117319443526212 1.03115688111059 0.302467257288364 NA FBgn0016920 1.12940618021598 -0.0173814241531565 0.106114167196911 -0.163799279703176 0.869889158734416 NA +======= +FBgn0015380 1.36389597888759 0.100102488372154 0.0960364544118687 1.04233844309628 0.297254795010349 NA +FBgn0015381 0.286744367017713 0.0224442132897042 0.0578510287325479 0.387965672891773 0.698041436892705 NA +FBgn0015400 0 NA NA NA NA NA +FBgn0015524 0 NA NA NA NA NA +FBgn0015550 0 NA NA NA NA NA +FBgn0015561 0.786061392791026 -0.0188324523722959 0.0888278113441599 -0.212010766530432 0.832098634775287 NA +FBgn0015570 1.12559497029793 -0.0011352399285563 0.112531127158752 -0.0100882303165307 0.99195089331432 NA +FBgn0015574 0.474853175544917 -0.0270624195338463 0.0611849474410853 -0.442305185599849 0.658268378990517 NA +FBgn0015583 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0015584 0 NA NA NA NA NA +FBgn0015585 0 NA NA NA NA NA +FBgn0015586 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0015591 0.192904947340298 -0.0292218088439432 0.045236503280153 -0.645978506848117 0.518293274928066 NA +FBgn0015721 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0015770 0 NA NA NA NA NA +FBgn0015831 0 NA NA NA NA NA +FBgn0015904 0.370964915573665 0.00731950038980513 0.0632034825426523 0.115808498129286 0.907804315303395 NA +FBgn0015919 0 NA NA NA NA NA +FBgn0015946 0 NA NA NA NA NA +FBgn0016036 0.955716212302635 -0.0369893771878201 0.0982224074882313 -0.376587971459079 0.706479828162544 NA +FBgn0016047 0.779069566825847 -0.0443688739440993 0.0696607691712774 -0.636927706540363 0.524171934547862 NA +FBgn0016053 0 NA NA NA NA NA +FBgn0016061 0 NA NA NA NA NA +FBgn0016650 0.262253923294042 0.0146475296657137 0.0496259291203528 0.295158799549939 0.767872573809437 NA +FBgn0016660 0 NA NA NA NA NA +FBgn0016675 1.41602156457075 0.120974751496609 0.117319443533747 1.03115688118492 0.302467257253512 NA +FBgn0016920 1.12940618021598 -0.0173814241559429 0.106114167204352 -0.163799279717949 0.869889158722786 NA +>>>>>>> add new deseq2 +======= +FBgn0015380 1.36389597888759 0.100102488372154 0.0960364544118687 1.04233844309628 0.297254795010349 NA +FBgn0015381 0.286744367017713 0.0224442132897042 0.0578510287325479 0.387965672891773 0.698041436892705 NA +FBgn0015400 0 NA NA NA NA NA +FBgn0015524 0 NA NA NA NA NA +FBgn0015550 0 NA NA NA NA NA +FBgn0015561 0.786061392791026 -0.0188324523722959 0.0888278113441599 -0.212010766530432 0.832098634775287 NA +FBgn0015570 1.12559497029793 -0.0011352399285563 0.112531127158752 -0.0100882303165307 0.99195089331432 NA +FBgn0015574 0.474853175544917 -0.0270624195338463 0.0611849474410853 -0.442305185599849 0.658268378990517 NA +FBgn0015583 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0015584 0 NA NA NA NA NA +FBgn0015585 0 NA NA NA NA NA +FBgn0015586 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0015591 0.192904947340298 -0.0292218088439432 0.045236503280153 -0.645978506848117 0.518293274928066 NA +FBgn0015721 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0015770 0 NA NA NA NA NA +FBgn0015831 0 NA NA NA NA NA +FBgn0015904 0.370964915573665 0.00731950038980513 0.0632034825426523 0.115808498129286 0.907804315303395 NA +FBgn0015919 0 NA NA NA NA NA +FBgn0015946 0 NA NA NA NA NA +FBgn0016036 0.955716212302635 -0.0369893771878201 0.0982224074882313 -0.376587971459079 0.706479828162544 NA +FBgn0016047 0.779069566825847 -0.0443688739440993 0.0696607691712774 -0.636927706540363 0.524171934547862 NA +FBgn0016053 0 NA NA NA NA NA +FBgn0016061 0 NA NA NA NA NA +FBgn0016650 0.262253923294042 0.0146475296657137 0.0496259291203528 0.295158799549939 0.767872573809437 NA +FBgn0016660 0 NA NA NA NA NA +FBgn0016675 1.41602156457075 0.120974751496609 0.117319443533747 1.03115688118492 0.302467257253512 NA +FBgn0016920 1.12940618021598 -0.0173814241559429 0.106114167204352 -0.163799279717949 0.869889158722786 NA +>>>>>>> add new deseq2 FBgn0016975 0 NA NA NA NA NA FBgn0016976 0 NA NA NA NA NA FBgn0017556 0 NA NA NA NA NA FBgn0017557 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0017561 1.19754143377002 0.0182234991847412 0.109850377071056 0.165893824587907 0.86824050742138 NA FBgn0017590 0.328998139815857 0.0535893694397368 0.0546082162619801 0.981342609373002 0.326423817193168 NA FBgn0019809 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA @@ -3527,19 +10097,93 @@ FBgn0020639 0.348665851231158 0.0181719497122663 0.0535196429239593 0.339537947554789 0.734204515081536 NA FBgn0020640 0 NA NA NA NA NA FBgn0020641 0.105352514349918 0.0254741503092245 0.0405830500415472 0.627704183967078 0.530197743974526 NA +======= +FBgn0017561 1.19754143377002 0.0182234991878345 0.109850377076265 0.1658938246082 0.86824050740541 NA +FBgn0017590 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0019809 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0019828 0 NA NA NA NA NA +FBgn0019929 0 NA NA NA NA NA +FBgn0019940 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0020258 0.98033563868925 -0.161287366911854 0.10160266949613 -1.58743237467788 0.112414751769582 NA +FBgn0020277 0.405964203493105 -0.0263453982164219 0.0638121399135509 -0.412858717042136 0.679710128888967 NA +FBgn0020280 0 NA NA NA NA NA +FBgn0020300 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0020371 0.47270842001492 0.00796294654279172 0.0589483559655663 0.135083437228396 0.892545905319832 NA +FBgn0020377 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0020378 0.476317429923583 0.0258811273344746 0.0695494765083361 0.372125408181505 0.709799479621315 NA +FBgn0020399 0.644199736633511 -0.0321773298061649 0.0653736209138031 -0.492206632528304 0.622573276193926 NA +FBgn0020429 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0020439 1.12340359091676 -0.0133147045035061 0.106334874426635 -0.125214842029014 0.900353467481255 NA +FBgn0020506 0 NA NA NA NA NA +FBgn0020508 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0020509 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0020517 0 NA NA NA NA NA +FBgn0020518 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0020546 0 NA NA NA NA NA +FBgn0020556 0 NA NA NA NA NA +FBgn0020617 0 NA NA NA NA NA +FBgn0020637 0.161724141252494 0.0323066554537033 0.0425491405669316 0.759278683969739 0.447685865955766 NA +FBgn0020638 0 NA NA NA NA NA +FBgn0020639 0.348665851231158 0.0181719497087503 0.0535196429141127 0.339537947551562 0.734204515083966 NA +FBgn0020640 0 NA NA NA NA NA +FBgn0020641 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +>>>>>>> add new deseq2 +======= +FBgn0017561 1.19754143377002 0.0182234991878345 0.109850377076265 0.1658938246082 0.86824050740541 NA +FBgn0017590 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0019809 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0019828 0 NA NA NA NA NA +FBgn0019929 0 NA NA NA NA NA +FBgn0019940 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0020258 0.98033563868925 -0.161287366911854 0.10160266949613 -1.58743237467788 0.112414751769582 NA +FBgn0020277 0.405964203493105 -0.0263453982164219 0.0638121399135509 -0.412858717042136 0.679710128888967 NA +FBgn0020280 0 NA NA NA NA NA +FBgn0020300 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0020371 0.47270842001492 0.00796294654279172 0.0589483559655663 0.135083437228396 0.892545905319832 NA +FBgn0020377 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0020378 0.476317429923583 0.0258811273344746 0.0695494765083361 0.372125408181505 0.709799479621315 NA +FBgn0020399 0.644199736633511 -0.0321773298061649 0.0653736209138031 -0.492206632528304 0.622573276193926 NA +FBgn0020429 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0020439 1.12340359091676 -0.0133147045035061 0.106334874426635 -0.125214842029014 0.900353467481255 NA +FBgn0020506 0 NA NA NA NA NA +FBgn0020508 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0020509 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0020517 0 NA NA NA NA NA +FBgn0020518 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0020546 0 NA NA NA NA NA +FBgn0020556 0 NA NA NA NA NA +FBgn0020617 0 NA NA NA NA NA +FBgn0020637 0.161724141252494 0.0323066554537033 0.0425491405669316 0.759278683969739 0.447685865955766 NA +FBgn0020638 0 NA NA NA NA NA +FBgn0020639 0.348665851231158 0.0181719497087503 0.0535196429141127 0.339537947551562 0.734204515083966 NA +FBgn0020640 0 NA NA NA NA NA +FBgn0020641 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +>>>>>>> add new deseq2 FBgn0020642 0 NA NA NA NA NA FBgn0020643 0 NA NA NA NA NA FBgn0020644 0 NA NA NA NA NA FBgn0020645 0 NA NA NA NA NA FBgn0020646 0 NA NA NA NA NA FBgn0020765 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0020880 0.690796916256403 0.00840454885376843 0.0805291313722941 0.10436656537264 0.916878454716882 NA FBgn0020906 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA +======= +FBgn0020880 0.690796916256403 0.00840454885397165 0.0805291313733192 0.104366565373835 0.916878454715934 NA +FBgn0020906 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 +======= +FBgn0020880 0.690796916256403 0.00840454885397165 0.0805291313733192 0.104366565373835 0.916878454715934 NA +FBgn0020906 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 FBgn0020907 0 NA NA NA NA NA FBgn0020912 0 NA NA NA NA NA FBgn0021738 0 NA NA NA NA NA FBgn0021742 0 NA NA NA NA NA FBgn0022700 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0022740 0.0923751652987496 -0.0204895043498917 0.0402731934859522 -0.508762841393214 0.610918468289372 NA FBgn0022981 0.635410218248872 0.0425046768630944 0.0814560177332428 0.52181137804074 0.601801666813684 NA FBgn0023001 1.14339505165747 0.0867231553076994 0.11272458072163 0.769336685508369 0.441693464354934 NA @@ -3570,11 +10214,50 @@ FBgn0024941 0.328998139815857 0.0535893694397368 0.0546082162619801 0.981342609373002 0.326423817193168 NA FBgn0024944 1.03248540808309 0.0236135951330628 0.104776853036138 0.225370341337876 0.82169118234811 NA FBgn0024989 1.25109452154677 0.0116039114898534 0.10898937147692 0.106468285233763 0.915210817074422 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0022740 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0022981 0.635410218248872 0.0425046768659729 0.0814560177366668 0.521811378054144 0.60180166680435 NA +FBgn0023001 1.14339505165747 0.0867231553328563 0.112724580736663 0.769336685628943 0.441693464283375 NA +FBgn0023076 1.20261196559726 -0.0206219582722425 0.108681864996737 -0.189746083883099 0.849508107029512 NA +FBgn0023178 0.402119128166193 -0.0403939543696361 0.0531567757131712 -0.759902266977178 0.447313006452081 NA +FBgn0023179 0.776929119066769 -0.0196709658344764 0.0953780721032062 -0.206242015598626 0.836601869554994 NA +FBgn0023197 0.278589750274915 0.0234782756778142 0.0573549253939029 0.40935064454482 0.682282354273329 NA +FBgn0023415 1.24503147334342 -0.0401065290602916 0.0996864074979529 -0.402326957776216 0.687443417577834 NA +FBgn0023417 0.47270842001492 0.00796294654279172 0.0589483559655663 0.135083437228396 0.892545905319832 NA +FBgn0023489 0.622912194681325 0.0271475280384518 0.071864291965206 0.377761017273998 0.7056081352439 NA +FBgn0023496 0 NA NA NA NA NA +FBgn0023534 1.02887639817443 0.00247973045800302 0.101930466585899 0.0243276670956205 0.980591244507651 NA +FBgn0023546 0 NA NA NA NA NA +FBgn0023550 1.1295617563742 -0.132755614169841 0.105104822744166 -1.26307823659984 0.206561064461319 NA +FBgn0024182 0 NA NA NA NA NA +FBgn0024184 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0024232 0 NA NA NA NA NA +FBgn0024244 0.609934845630156 -0.00962334948032012 0.0711071164931849 -0.135335954471483 0.892346259010098 NA +FBgn0024249 0 NA NA NA NA NA +FBgn0024251 0.864805301382551 0.0584302517181552 0.0953595492922284 0.612736240385284 0.540050755698371 NA +FBgn0024289 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0024290 1.09903729616162 0.103626231681674 0.0957504805908138 1.08225286225472 0.279140185166151 NA +FBgn0024293 0 NA NA NA NA NA +FBgn0024294 0 NA NA NA NA NA +FBgn0024319 0 NA NA NA NA NA +FBgn0024368 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0024740 0 NA NA NA NA NA +FBgn0024941 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0024944 1.03248540808309 0.0236135951392828 0.104776853045285 0.225370341377563 0.821691182317238 NA +FBgn0024989 1.25109452154677 0.011603911491206 0.108989371481446 0.106468285241753 0.915210817068083 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0025115 0 NA NA NA NA NA FBgn0025118 0 NA NA NA NA NA FBgn0025334 0 NA NA NA NA NA FBgn0025360 0 NA NA NA NA NA FBgn0025378 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0025391 0.659849730350456 -0.0104205272589061 0.0662272808983466 -0.157344935765984 0.874973007664971 NA FBgn0025393 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA FBgn0025573 0 NA NA NA NA NA @@ -3604,17 +10287,89 @@ FBgn0026064 0 NA NA NA NA NA FBgn0026077 0.267076655602412 0.0501740190961892 0.0527678364632217 0.950844727756834 0.341683203371434 NA FBgn0026087 1.29984906072584 0.160005977450367 0.109064238386924 1.46708013384479 0.142354257664819 NA +======= +FBgn0025391 0.659849730350456 -0.0104205272552474 0.0662272808736504 -0.157344935769413 0.874973007662268 NA +FBgn0025393 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0025573 0 NA NA NA NA NA +FBgn0025578 0.804751447224869 -0.0586095834965148 0.0955852005960754 -0.613165878514893 0.539766663894997 NA +FBgn0025583 0 NA NA NA NA NA +FBgn0025595 0.617362337370456 0.0403045326036401 0.0752577270041584 0.535553413690173 0.59226723287015 NA +FBgn0025612 0 NA NA NA NA NA +FBgn0025613 0 NA NA NA NA NA +FBgn0025620 1.05520045212888 -0.0198748140907157 0.0934816479146313 -0.212606586790871 0.831633833387514 NA +FBgn0025644 0.47270842001492 0.00796294654279172 0.0589483559655663 0.135083437228396 0.892545905319832 NA +FBgn0025645 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0025679 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0025680 0.493995961967106 -0.0563027976570631 0.0621797631483412 -0.905484273440259 0.365208887698622 NA +FBgn0025686 0.622381937575616 -0.0495394844258675 0.0736762533803488 -0.672394186090369 0.501332783063824 NA +FBgn0025709 0.680210546943271 -0.0176475119217565 0.0802260189515546 -0.219972424811621 0.825892630532721 NA +FBgn0025776 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0025821 0 NA NA NA NA NA +FBgn0025827 0 NA NA NA NA NA +FBgn0025833 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0025837 0 NA NA NA NA NA +FBgn0025878 0.450815463809592 -0.0292420875340677 0.0656194657547951 -0.445631295496045 0.65586360049004 NA +FBgn0025881 1.02238290370709 -0.0489291436779296 0.0831119154979555 -0.588713945344374 0.556053181452136 NA +FBgn0025882 0.858070914819766 0.0236324244572133 0.0779433713786115 0.303199926295442 0.761737505180263 NA +FBgn0026058 0 NA NA NA NA NA +FBgn0026061 1.15839560692262 -0.115613457146177 0.113881427361049 -1.01520906284075 0.31000618140352 NA +FBgn0026063 0 NA NA NA NA NA +FBgn0026064 0 NA NA NA NA NA +FBgn0026077 0.267076655602412 0.0501740190928278 0.0527678364612048 0.950844727729477 0.341683203385323 NA +FBgn0026087 1.29984906072584 0.160005977463555 0.109064238390309 1.46708013392016 0.142354257644316 NA +>>>>>>> add new deseq2 +======= +FBgn0025391 0.659849730350456 -0.0104205272552474 0.0662272808736504 -0.157344935769413 0.874973007662268 NA +FBgn0025393 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0025573 0 NA NA NA NA NA +FBgn0025578 0.804751447224869 -0.0586095834965148 0.0955852005960754 -0.613165878514893 0.539766663894997 NA +FBgn0025583 0 NA NA NA NA NA +FBgn0025595 0.617362337370456 0.0403045326036401 0.0752577270041584 0.535553413690173 0.59226723287015 NA +FBgn0025612 0 NA NA NA NA NA +FBgn0025613 0 NA NA NA NA NA +FBgn0025620 1.05520045212888 -0.0198748140907157 0.0934816479146313 -0.212606586790871 0.831633833387514 NA +FBgn0025644 0.47270842001492 0.00796294654279172 0.0589483559655663 0.135083437228396 0.892545905319832 NA +FBgn0025645 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0025679 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0025680 0.493995961967106 -0.0563027976570631 0.0621797631483412 -0.905484273440259 0.365208887698622 NA +FBgn0025686 0.622381937575616 -0.0495394844258675 0.0736762533803488 -0.672394186090369 0.501332783063824 NA +FBgn0025709 0.680210546943271 -0.0176475119217565 0.0802260189515546 -0.219972424811621 0.825892630532721 NA +FBgn0025776 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0025821 0 NA NA NA NA NA +FBgn0025827 0 NA NA NA NA NA +FBgn0025833 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0025837 0 NA NA NA NA NA +FBgn0025878 0.450815463809592 -0.0292420875340677 0.0656194657547951 -0.445631295496045 0.65586360049004 NA +FBgn0025881 1.02238290370709 -0.0489291436779296 0.0831119154979555 -0.588713945344374 0.556053181452136 NA +FBgn0025882 0.858070914819766 0.0236324244572133 0.0779433713786115 0.303199926295442 0.761737505180263 NA +FBgn0026058 0 NA NA NA NA NA +FBgn0026061 1.15839560692262 -0.115613457146177 0.113881427361049 -1.01520906284075 0.31000618140352 NA +FBgn0026063 0 NA NA NA NA NA +FBgn0026064 0 NA NA NA NA NA +FBgn0026077 0.267076655602412 0.0501740190928278 0.0527678364612048 0.950844727729477 0.341683203385323 NA +FBgn0026087 1.29984906072584 0.160005977463555 0.109064238390309 1.46708013392016 0.142354257644316 NA +>>>>>>> add new deseq2 FBgn0026136 0 NA NA NA NA NA FBgn0026141 0 NA NA NA NA NA FBgn0026162 0 NA NA NA NA NA FBgn0026163 0 NA NA NA NA NA FBgn0026164 0 NA NA NA NA NA FBgn0026190 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0026314 0.876318396055054 0.0197459915422149 0.0944930160424941 0.208967735068749 0.834473426232543 NA +======= +FBgn0026314 0.876318396055054 0.0197459915437385 0.094493016048427 0.208967735071752 0.834473426230199 NA +>>>>>>> add new deseq2 +======= +FBgn0026314 0.876318396055054 0.0197459915437385 0.094493016048427 0.208967735071752 0.834473426230199 NA +>>>>>>> add new deseq2 FBgn0026320 0 NA NA NA NA NA FBgn0026384 0 NA NA NA NA NA FBgn0026385 0 NA NA NA NA NA FBgn0026386 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0026388 0.726807726566163 0.0289585532603323 0.0837190885936217 0.345901439525926 0.729416786768113 NA FBgn0026389 0 NA NA NA NA NA FBgn0026390 0 NA NA NA NA NA @@ -3663,19 +10418,129 @@ FBgn0028374 0 NA NA NA NA NA FBgn0028377 0 NA NA NA NA NA FBgn0028381 0.181391852667795 0.000922878063802334 0.043122754627709 0.0214011853317304 0.982925628025152 NA +======= +FBgn0026388 0.726807726566163 0.0289585532615127 0.0837190885949696 0.345901439534456 0.729416786761702 NA +FBgn0026389 0 NA NA NA NA NA +FBgn0026390 0 NA NA NA NA NA +FBgn0026391 0 NA NA NA NA NA +FBgn0026392 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0026394 0 NA NA NA NA NA +FBgn0026395 0 NA NA NA NA NA +FBgn0026396 1.08235626860474 -0.0814093881718423 0.103686455627767 -0.785149686899329 0.432365810582815 NA +FBgn0026397 0 NA NA NA NA NA +FBgn0026398 0 NA NA NA NA NA +FBgn0026399 0 NA NA NA NA NA +FBgn0026411 0.924450609183882 -0.0802231541265222 0.0894252383958135 -0.897097458901243 0.369666914555838 NA +FBgn0026438 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0026563 0 NA NA NA NA NA +FBgn0026565 0 NA NA NA NA NA +FBgn0026754 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0026755 0 NA NA NA NA NA +FBgn0026756 0.210705028699836 0.0343775297986814 0.043774172333087 0.785338202104552 0.432255303094243 NA +FBgn0026778 0 NA NA NA NA NA +FBgn0026781 0.577134209005467 0.0841857977956211 0.0678578529966061 1.24061982626877 0.214746224273716 NA +FBgn0027073 1.30936037200038 -0.0723964944231266 0.105273184166305 -0.687701193769902 0.491640968100433 NA +FBgn0027074 0.316947516124059 -0.0419869150473819 0.0539546813196688 -0.778188546766115 0.436457867801375 NA +FBgn0027106 0.516139450151393 0.0312688980504339 0.0704580731924012 0.443794396208469 0.657191240260754 NA +FBgn0027107 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0027109 0 NA NA NA NA NA +FBgn0027358 0 NA NA NA NA NA +FBgn0027360 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0027364 0 NA NA NA NA NA +FBgn0027376 0.900037690577574 -0.0180144228591469 0.0882902736066734 -0.204036323858275 0.838325113601276 NA +FBgn0027494 1.16765914711287 0.203864477873586 0.102719606902499 1.98466956816817 0.0471812467268374 NA +FBgn0027527 0 NA NA NA NA NA +FBgn0027528 0.816074945914168 0.0768558952322389 0.0856701633220748 0.897113910513992 0.369658136693975 NA +FBgn0027546 0 NA NA NA NA NA +FBgn0027562 0 NA NA NA NA NA +FBgn0027586 0.369953393183345 -0.0464884100901118 0.056674049236172 -0.820276841282072 0.412058305423753 NA +FBgn0027589 0 NA NA NA NA NA +FBgn0027600 0 NA NA NA NA NA +FBgn0027608 1.1304177026063 0.0436427973927095 0.112851523925783 0.386727585720609 0.698957891695551 NA +FBgn0027788 0.46480433525108 0.0587026694111473 0.0711062728022514 0.825562458805865 0.409052338302734 NA +FBgn0027790 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0027796 1.18913628504826 -0.039051369281134 0.110262073778175 -0.354168645147174 0.723212500159945 NA +FBgn0027844 1.00612460184358 -0.0024655438114731 0.0911413232233624 -0.0270518764077051 0.978418357761058 NA +FBgn0027934 0 NA NA NA NA NA +FBgn0028370 1.0723074283109 0.0280628909607005 0.102524011831274 0.273720179882193 0.78429966851169 NA +FBgn0028371 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0028374 0 NA NA NA NA NA +FBgn0028377 0 NA NA NA NA NA +FBgn0028381 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +>>>>>>> add new deseq2 +======= +FBgn0026388 0.726807726566163 0.0289585532615127 0.0837190885949696 0.345901439534456 0.729416786761702 NA +FBgn0026389 0 NA NA NA NA NA +FBgn0026390 0 NA NA NA NA NA +FBgn0026391 0 NA NA NA NA NA +FBgn0026392 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0026394 0 NA NA NA NA NA +FBgn0026395 0 NA NA NA NA NA +FBgn0026396 1.08235626860474 -0.0814093881718423 0.103686455627767 -0.785149686899329 0.432365810582815 NA +FBgn0026397 0 NA NA NA NA NA +FBgn0026398 0 NA NA NA NA NA +FBgn0026399 0 NA NA NA NA NA +FBgn0026411 0.924450609183882 -0.0802231541265222 0.0894252383958135 -0.897097458901243 0.369666914555838 NA +FBgn0026438 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0026563 0 NA NA NA NA NA +FBgn0026565 0 NA NA NA NA NA +FBgn0026754 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0026755 0 NA NA NA NA NA +FBgn0026756 0.210705028699836 0.0343775297986814 0.043774172333087 0.785338202104552 0.432255303094243 NA +FBgn0026778 0 NA NA NA NA NA +FBgn0026781 0.577134209005467 0.0841857977956211 0.0678578529966061 1.24061982626877 0.214746224273716 NA +FBgn0027073 1.30936037200038 -0.0723964944231266 0.105273184166305 -0.687701193769902 0.491640968100433 NA +FBgn0027074 0.316947516124059 -0.0419869150473819 0.0539546813196688 -0.778188546766115 0.436457867801375 NA +FBgn0027106 0.516139450151393 0.0312688980504339 0.0704580731924012 0.443794396208469 0.657191240260754 NA +FBgn0027107 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0027109 0 NA NA NA NA NA +FBgn0027358 0 NA NA NA NA NA +FBgn0027360 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0027364 0 NA NA NA NA NA +FBgn0027376 0.900037690577574 -0.0180144228591469 0.0882902736066734 -0.204036323858275 0.838325113601276 NA +FBgn0027494 1.16765914711287 0.203864477873586 0.102719606902499 1.98466956816817 0.0471812467268374 NA +FBgn0027527 0 NA NA NA NA NA +FBgn0027528 0.816074945914168 0.0768558952322389 0.0856701633220748 0.897113910513992 0.369658136693975 NA +FBgn0027546 0 NA NA NA NA NA +FBgn0027562 0 NA NA NA NA NA +FBgn0027586 0.369953393183345 -0.0464884100901118 0.056674049236172 -0.820276841282072 0.412058305423753 NA +FBgn0027589 0 NA NA NA NA NA +FBgn0027600 0 NA NA NA NA NA +FBgn0027608 1.1304177026063 0.0436427973927095 0.112851523925783 0.386727585720609 0.698957891695551 NA +FBgn0027788 0.46480433525108 0.0587026694111473 0.0711062728022514 0.825562458805865 0.409052338302734 NA +FBgn0027790 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0027796 1.18913628504826 -0.039051369281134 0.110262073778175 -0.354168645147174 0.723212500159945 NA +FBgn0027844 1.00612460184358 -0.0024655438114731 0.0911413232233624 -0.0270518764077051 0.978418357761058 NA +FBgn0027934 0 NA NA NA NA NA +FBgn0028370 1.0723074283109 0.0280628909607005 0.102524011831274 0.273720179882193 0.78429966851169 NA +FBgn0028371 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0028374 0 NA NA NA NA NA +FBgn0028377 0 NA NA NA NA NA +FBgn0028381 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +>>>>>>> add new deseq2 FBgn0028400 0 NA NA NA NA NA FBgn0028407 0 NA NA NA NA NA FBgn0028410 0 NA NA NA NA NA FBgn0028412 0 NA NA NA NA NA FBgn0028415 0 NA NA NA NA NA FBgn0028416 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0028422 0.442660847066793 -0.0283580285864454 0.0652657095773002 -0.434501191668779 0.66392452964616 NA +======= +FBgn0028422 0.442660847066793 -0.0283580285861105 0.0652657095766007 -0.434501191668305 0.663924529646504 NA +>>>>>>> add new deseq2 +======= +FBgn0028422 0.442660847066793 -0.0283580285861105 0.0652657095766007 -0.434501191668305 0.663924529646504 NA +>>>>>>> add new deseq2 FBgn0028431 0 NA NA NA NA NA FBgn0028481 0 NA NA NA NA NA FBgn0028516 0 NA NA NA NA NA FBgn0028517 0 NA NA NA NA NA FBgn0028518 0 NA NA NA NA NA FBgn0028520 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0028526 0.766143149396766 -0.0437336395772135 0.0863053373620264 -0.506731575519637 0.612343172310478 NA FBgn0028531 0.0923751652987496 -0.0204895043498917 0.0402731934859522 -0.508762841393214 0.610918468289372 NA FBgn0028532 0.52352291769304 -0.00982444058077516 0.0693450397639543 -0.141674741469857 0.887336927051766 NA @@ -3710,45 +10575,139 @@ FBgn0028857 0.350285681768043 -0.0117894018155007 0.0534498779463525 -0.220569293485266 0.825427812445119 NA FBgn0028858 0 NA NA NA NA NA FBgn0028862 0.740925580670596 0.0100085268807545 0.0854402031447242 0.117140719618859 0.906748542251816 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0028526 0.766143149396766 -0.0437336395818367 0.0863053373645982 -0.506731575558106 0.612343172283483 NA +FBgn0028531 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0028532 0.52352291769304 -0.0098244405805537 0.0693450397595411 -0.141674741475679 0.887336927047167 NA +FBgn0028533 0.971777646269355 0.039522615923723 0.0931644903158076 0.424224034176002 0.671402434436088 NA +FBgn0028534 0.981799893067916 -0.0710825220784486 0.0987625943057171 -0.719731215832731 0.471690502660217 NA +FBgn0028537 0 NA NA NA NA NA +FBgn0028560 0.526762571749591 0.06568549723129 0.0598150087905078 1.0981440705182 0.272141583970719 NA +FBgn0028567 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0028569 0 NA NA NA NA NA +FBgn0028570 0 NA NA NA NA NA +FBgn0028581 0 NA NA NA NA NA +FBgn0028642 0.161724141252494 0.0323066554537033 0.0425491405669316 0.759278683969739 0.447685865955766 NA +FBgn0028644 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0028645 0.784098806914524 -0.0703033711941951 0.0865630168204857 -0.812164060085731 0.416697499048977 NA +FBgn0028667 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0028668 0 NA NA NA NA NA +FBgn0028669 0.161724141252494 0.0323066554537033 0.0425491405669316 0.759278683969739 0.447685865955766 NA +FBgn0028699 0.667233197892103 -0.0600141940645293 0.0808990419339723 -0.741840603174402 0.458183916649759 NA +FBgn0028741 0.532689056826159 0.0366697266736896 0.0727997384449103 0.503706846439272 0.614467396535492 NA +FBgn0028789 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0028833 0 NA NA NA NA NA +FBgn0028838 0 NA NA NA NA NA +FBgn0028841 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0028844 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0028847 0 NA NA NA NA NA +FBgn0028848 0 NA NA NA NA NA +FBgn0028850 0 NA NA NA NA NA +FBgn0028852 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0028853 0 NA NA NA NA NA +FBgn0028855 0 NA NA NA NA NA +FBgn0028856 0.517559680331406 0.0054729567983344 0.060581103305301 0.0903409891819435 0.928016248644309 NA +FBgn0028857 0.350285681768043 -0.0117894018140941 0.0534498779374822 -0.220569293495556 0.825427812437106 NA +FBgn0028858 0 NA NA NA NA NA +FBgn0028862 0.740925580670596 0.0100085268804436 0.0854402031434468 0.117140719616971 0.906748542253312 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0028864 0 NA NA NA NA NA FBgn0028866 0 NA NA NA NA NA FBgn0028867 0 NA NA NA NA NA FBgn0028868 0 NA NA NA NA NA FBgn0028870 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0028871 1.30688716654013 -0.0924331788608665 0.0790901472751139 -1.16870662206936 NA NA FBgn0028872 0 NA NA NA NA NA FBgn0028873 0 NA NA NA NA NA FBgn0028875 0.306412078433015 -0.00875828531046118 0.0521928940867176 -0.167806086704244 0.866735833906924 NA FBgn0028878 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA +======= +FBgn0028871 1.30688716654013 -0.0924331787260183 0.0790901472212923 -1.16870662115968 NA NA +FBgn0028872 0 NA NA NA NA NA +FBgn0028873 0 NA NA NA NA NA +FBgn0028875 0.306412078433015 -0.0087582853067315 0.0521928940768063 -0.167806086664651 0.866735833938074 NA +FBgn0028878 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 +======= +FBgn0028871 1.30688716654013 -0.0924331787260183 0.0790901472212923 -1.16870662115968 NA NA +FBgn0028872 0 NA NA NA NA NA +FBgn0028873 0 NA NA NA NA NA +FBgn0028875 0.306412078433015 -0.0087582853067315 0.0521928940768063 -0.167806086664651 0.866735833938074 NA +FBgn0028878 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 FBgn0028879 0 NA NA NA NA NA FBgn0028880 0 NA NA NA NA NA FBgn0028882 0 NA NA NA NA NA FBgn0028884 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0028887 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA FBgn0028888 0.411764592782933 0.00742105016197008 0.0580445570329321 0.127850922486318 0.898266950382465 NA +======= +FBgn0028887 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0028888 0.411764592782933 0.0074210501589622 0.0580445570182289 0.127850922466884 0.898266950397845 NA +>>>>>>> add new deseq2 +======= +FBgn0028887 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0028888 0.411764592782933 0.0074210501589622 0.0580445570182289 0.127850922466884 0.898266950397845 NA +>>>>>>> add new deseq2 FBgn0028889 0 NA NA NA NA NA FBgn0028891 0 NA NA NA NA NA FBgn0028892 0 NA NA NA NA NA FBgn0028893 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0028896 1.28893894208731 0.00722618590658535 0.114996555132957 0.0628382815313951 0.949895281835978 NA FBgn0028900 0 NA NA NA NA NA FBgn0028901 0.22457235082531 -0.0256917338023628 0.0424593607473281 -0.605089981341265 0.545119210714508 NA FBgn0028902 1.29239237583775 0.107813878731636 0.11032262474802 0.977259913620494 0.328440493235401 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0028896 1.28893894208731 0.0072261859116781 0.114996555141889 0.0628382815708001 0.9498952818046 NA +FBgn0028900 0 NA NA NA NA NA +FBgn0028901 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0028902 1.29239237583775 0.107813878732329 0.110322624747882 0.977259913628002 0.328440493231685 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0028904 0 NA NA NA NA NA FBgn0028909 0 NA NA NA NA NA FBgn0028910 0 NA NA NA NA NA FBgn0028911 0 NA NA NA NA NA FBgn0028912 0 NA NA NA NA NA FBgn0028913 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0028917 0.181391852667795 0.000922878063802334 0.043122754627709 0.0214011853317304 0.982925628025152 NA FBgn0028935 0 NA NA NA NA NA FBgn0028938 0.22457235082531 -0.0256917338023628 0.0424593607473281 -0.605089981341265 0.545119210714508 NA +======= +FBgn0028917 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0028935 0 NA NA NA NA NA +FBgn0028938 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +>>>>>>> add new deseq2 +======= +FBgn0028917 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0028935 0 NA NA NA NA NA +FBgn0028938 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +>>>>>>> add new deseq2 FBgn0028944 0 NA NA NA NA NA FBgn0028945 0 NA NA NA NA NA FBgn0028946 0 NA NA NA NA NA FBgn0028947 0 NA NA NA NA NA FBgn0028948 0 NA NA NA NA NA FBgn0028949 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0028950 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA FBgn0028961 1.03321980499918 0.0177193270255265 0.10796176410852 0.164125949328835 0.869631994194121 NA FBgn0028963 0 NA NA NA NA NA @@ -3783,10 +10742,83 @@ FBgn0029639 0.369953393183345 -0.0464884100989099 0.0566740492415048 -0.820276841360127 0.412058305379266 NA FBgn0029642 0.22457235082531 -0.0256917338023628 0.0424593607473281 -0.605089981341265 0.545119210714508 NA FBgn0029644 0.269423611141796 -0.0265926243080571 0.0432208120596076 -0.615273592531813 0.53837405408732 NA +======= +FBgn0028950 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0028961 1.03321980499918 0.0177193270284042 0.107961764123157 0.164125949333238 0.869631994190654 NA +FBgn0028963 0 NA NA NA NA NA +FBgn0028981 0.366142183265295 -0.0284444275212143 0.0637369882840396 -0.446278186136654 0.655396311413923 NA +FBgn0028986 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0028987 0 NA NA NA NA NA +FBgn0028999 0.49627213837922 0.057054600605111 0.0560069341252567 1.01870601375021 0.308342556717791 NA +FBgn0029003 0.329924865175228 -0.00567773093566639 0.0525661604824935 -0.108011140314448 0.913986855218924 NA +FBgn0029082 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0029084 1.21743793868998 -0.0466888458436304 0.100050094945389 -0.466654688025183 0.640746953345352 NA +FBgn0029091 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0029105 0.205882296391466 0.00423405052709174 0.0447574735119474 0.09459985550707 0.924632664611071 NA +FBgn0029123 0.732763692014211 -0.0368953815784789 0.0850278876492074 -0.433920947568345 0.664345847643771 NA +FBgn0029153 0 NA NA NA NA NA +FBgn0029154 0 NA NA NA NA NA +FBgn0029161 0.58864730367797 0.0479297939976576 0.0644283836097712 0.743923583244894 0.456922707052009 NA +FBgn0029170 0 NA NA NA NA NA +FBgn0029172 0 NA NA NA NA NA +FBgn0029175 0 NA NA NA NA NA +FBgn0029501 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0029518 0.911473260132714 -0.135293325127164 0.0938089960763328 -1.44222122382672 0.149239975056753 NA +FBgn0029524 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0029531 0.851827952331383 0.0169456071448566 0.0989957036672028 0.171175177478643 0.864086024914978 NA +FBgn0029532 1.01910195089475 0.0334049879963749 0.0968615088729328 0.344873710776042 0.730189315243379 NA +FBgn0029535 0.369953393183345 -0.0464884100901118 0.056674049236172 -0.820276841282072 0.412058305423753 NA +FBgn0029539 0 NA NA NA NA NA +FBgn0029552 0 NA NA NA NA NA +FBgn0029589 0.583097446367101 0.0685908352705453 0.0745658568557947 0.919869202377642 0.357641114595113 NA +FBgn0029590 0.951910334497182 0.0846387434920053 0.0911547243912626 0.92851735395207 0.353139270137001 NA +FBgn0029603 0 NA NA NA NA NA +======= +FBgn0028950 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0028961 1.03321980499918 0.0177193270284042 0.107961764123157 0.164125949333238 0.869631994190654 NA +FBgn0028963 0 NA NA NA NA NA +FBgn0028981 0.366142183265295 -0.0284444275212143 0.0637369882840396 -0.446278186136654 0.655396311413923 NA +FBgn0028986 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0028987 0 NA NA NA NA NA +FBgn0028999 0.49627213837922 0.057054600605111 0.0560069341252567 1.01870601375021 0.308342556717791 NA +FBgn0029003 0.329924865175228 -0.00567773093566639 0.0525661604824935 -0.108011140314448 0.913986855218924 NA +FBgn0029082 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0029084 1.21743793868998 -0.0466888458436304 0.100050094945389 -0.466654688025183 0.640746953345352 NA +FBgn0029091 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0029105 0.205882296391466 0.00423405052709174 0.0447574735119474 0.09459985550707 0.924632664611071 NA +FBgn0029123 0.732763692014211 -0.0368953815784789 0.0850278876492074 -0.433920947568345 0.664345847643771 NA +FBgn0029153 0 NA NA NA NA NA +FBgn0029154 0 NA NA NA NA NA +FBgn0029161 0.58864730367797 0.0479297939976576 0.0644283836097712 0.743923583244894 0.456922707052009 NA +FBgn0029170 0 NA NA NA NA NA +FBgn0029172 0 NA NA NA NA NA +FBgn0029175 0 NA NA NA NA NA +FBgn0029501 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0029518 0.911473260132714 -0.135293325127164 0.0938089960763328 -1.44222122382672 0.149239975056753 NA +FBgn0029524 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0029531 0.851827952331383 0.0169456071448566 0.0989957036672028 0.171175177478643 0.864086024914978 NA +FBgn0029532 1.01910195089475 0.0334049879963749 0.0968615088729328 0.344873710776042 0.730189315243379 NA +FBgn0029535 0.369953393183345 -0.0464884100901118 0.056674049236172 -0.820276841282072 0.412058305423753 NA +FBgn0029539 0 NA NA NA NA NA +FBgn0029552 0 NA NA NA NA NA +FBgn0029589 0.583097446367101 0.0685908352705453 0.0745658568557947 0.919869202377642 0.357641114595113 NA +FBgn0029590 0.951910334497182 0.0846387434920053 0.0911547243912626 0.92851735395207 0.353139270137001 NA +FBgn0029603 0 NA NA NA NA NA +>>>>>>> add new deseq2 +FBgn0029606 0.273767017966545 -0.0144624384667119 0.0568086761346219 -0.254581508508306 0.799046342772084 NA +FBgn0029639 0.369953393183345 -0.0464884100901118 0.056674049236172 -0.820276841282072 0.412058305423753 NA +FBgn0029642 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0029644 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0029645 0 NA NA NA NA NA FBgn0029646 0 NA NA NA NA NA FBgn0029647 0 NA NA NA NA NA FBgn0029649 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0029656 0.962944103686063 0.0237671889309445 0.0925807137563039 0.256718575247819 0.797396031031324 NA FBgn0029679 0 NA NA NA NA NA FBgn0029681 0.541519866949369 -0.0640476923046437 0.0662009835099027 -0.967473425754515 0.333307419617327 NA @@ -3805,12 +10837,39 @@ FBgn0029717 0 NA NA NA NA NA FBgn0029720 0.702154434770686 0.0721455970565764 0.0764883607291221 0.943223208980445 0.345566744476863 NA FBgn0029723 0.303080193998586 0.0217225016506154 0.0523453823140218 0.41498410538491 0.678153538845369 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0029656 0.962944103686063 0.0237671889307749 0.092580713752386 0.256718575256851 0.797396031024351 NA +FBgn0029679 0 NA NA NA NA NA +FBgn0029681 0.541519866949369 -0.064047692283738 0.066200983499468 -0.967473425591217 0.333307419698923 NA +FBgn0029690 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0029692 0.422300030473977 -0.021369769894678 0.0644840164344301 -0.3313963843491 0.740345095621483 NA +FBgn0029694 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0029696 0.242586211878741 0.0362641901823724 0.0448509226579209 0.808549479772362 0.418774334185881 NA +FBgn0029700 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0029701 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0029702 0.290102844947418 -0.00716602489012231 0.0511993393458445 -0.139963229636945 0.888689042854832 NA +FBgn0029703 0.83678337286758 0.0716604790763412 0.0722114261212306 0.992370361942935 0.321016891272064 NA +FBgn0029705 1.09099748274475 -0.0067470009186701 0.0945414519304423 -0.0713655310015137 0.943106841913216 NA +FBgn0029707 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0029708 1.19729090179106 -0.0399267479152596 0.110335333674282 -0.361867287528457 0.71745120639512 NA +FBgn0029716 0.534880436207323 0.0651266622738214 0.077452859415953 0.840855492810989 0.400428894655249 NA +FBgn0029717 0 NA NA NA NA NA +FBgn0029720 0.702154434770686 0.0721455970438169 0.0764883607210093 0.943223208913672 0.34556674451101 NA +FBgn0029723 0.303080193998586 0.02172250164421 0.0523453823055393 0.41498410532979 0.67815353888572 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0029724 0 NA NA NA NA NA FBgn0029725 0 NA NA NA NA NA FBgn0029726 0 NA NA NA NA NA FBgn0029727 0 NA NA NA NA NA FBgn0029729 0 NA NA NA NA NA FBgn0029730 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0029733 0.100529782041548 -0.0209903901435717 0.0404598159839989 -0.518795986414596 0.60390301708516 NA FBgn0029740 0 NA NA NA NA NA FBgn0029746 1.17218487800723 0.00105244093888703 0.0977640382562815 0.010765113201729 0.991410848277485 NA @@ -3818,10 +10877,26 @@ FBgn0029749 0 NA NA NA NA NA FBgn0029751 0.291567099326083 0.053693560362659 0.0545425422580221 0.984434500846204 0.3249019215236 NA FBgn0029752 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0029733 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0029740 0 NA NA NA NA NA +FBgn0029746 1.17218487800723 0.00105244094436017 0.0977640382449987 0.0107651132589545 0.991410848231828 NA +FBgn0029748 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0029749 0 NA NA NA NA NA +FBgn0029751 0.291567099326083 0.0536935603590554 0.0545425422559354 0.984434500817798 0.32490192153756 NA +FBgn0029752 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0029753 0 NA NA NA NA NA FBgn0029768 0 NA NA NA NA NA FBgn0029769 0 NA NA NA NA NA FBgn0029770 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0029775 0.998957646455905 0.143962907642181 0.0955127400157998 1.50726392749665 0.131743019895835 NA FBgn0029809 0.808270833425389 -0.0631588587355218 0.0659338694457666 -0.957912212136626 0.338107027882207 NA FBgn0029810 0.509852463464357 -0.0814747373801528 0.0741144082658916 -1.09931036739652 0.271632711795699 NA @@ -3856,10 +10931,84 @@ FBgn0029952 0.96898055839414 0.0581024556921099 0.0740677928226089 0.784449670739674 0.432776302727021 NA FBgn0029961 0 NA NA NA NA NA FBgn0029962 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA +======= +FBgn0029775 0.998957646455905 0.143962907625232 0.0955127400099255 1.5072639274119 0.131743019917549 NA +FBgn0029809 0.808270833425389 -0.0631588586655717 0.065933869411144 -0.957912211578724 0.338107028163556 NA +FBgn0029810 0.509852463464357 -0.0814747373945962 0.0741144082716444 -1.09931036750607 0.271632711747932 NA +FBgn0029811 0 NA NA NA NA NA +FBgn0029812 0 NA NA NA NA NA +FBgn0029814 0 NA NA NA NA NA +FBgn0029815 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0029816 0 NA NA NA NA NA +FBgn0029817 0.348665851231158 0.0181719497087503 0.0535196429141127 0.339537947551562 0.734204515083966 NA +FBgn0029827 0.441041016529908 0.00328835292490063 0.0651519390116612 0.0504720653718696 0.959746209627815 NA +FBgn0029828 0 NA NA NA NA NA +FBgn0029831 0.879358456771953 -0.0346440379331559 0.0793985170042417 -0.436331045469088 0.662596560245316 NA +FBgn0029835 0 NA NA NA NA NA +FBgn0029836 0 NA NA NA NA NA +FBgn0029837 0.728264709031243 0.0452944761335687 0.0770715043758158 0.587694200345485 0.556737569088752 NA +FBgn0029838 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0029839 0 NA NA NA NA NA +FBgn0029843 0.498339368791855 -0.0470103699493559 0.0757257465434786 -0.620797708773522 0.534732730978084 NA +FBgn0029859 0 NA NA NA NA NA +FBgn0029860 0 NA NA NA NA NA +FBgn0029863 0.511316717843023 -0.00442307088787168 0.0752260783320343 -0.0587970420091427 0.95311376452127 NA +FBgn0029906 0 NA NA NA NA NA +FBgn0029907 0 NA NA NA NA NA +FBgn0029920 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0029930 0.708531206599208 -0.0465337945891831 0.0696993531776911 -0.667635960272832 0.504365997416512 NA +FBgn0029931 0 NA NA NA NA NA +FBgn0029933 0 NA NA NA NA NA +FBgn0029940 0.598421750957653 0.0239356609588379 0.0710659588222304 0.33680909053394 0.736260819820432 NA +FBgn0029946 0.837610287385232 -0.0320058307996853 0.082441746946125 -0.388223587991177 0.697850578761671 NA +FBgn0029947 0 NA NA NA NA NA +FBgn0029948 0.421410057399673 0.0545542659034943 0.0546913150832727 0.997494132668601 0.318524720352748 NA +FBgn0029952 0.96898055839414 0.0581024556434341 0.0740677927903019 0.784449670424657 0.432776302911799 NA +FBgn0029961 0 NA NA NA NA NA +FBgn0029962 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 +======= +FBgn0029775 0.998957646455905 0.143962907625232 0.0955127400099255 1.5072639274119 0.131743019917549 NA +FBgn0029809 0.808270833425389 -0.0631588586655717 0.065933869411144 -0.957912211578724 0.338107028163556 NA +FBgn0029810 0.509852463464357 -0.0814747373945962 0.0741144082716444 -1.09931036750607 0.271632711747932 NA +FBgn0029811 0 NA NA NA NA NA +FBgn0029812 0 NA NA NA NA NA +FBgn0029814 0 NA NA NA NA NA +FBgn0029815 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0029816 0 NA NA NA NA NA +FBgn0029817 0.348665851231158 0.0181719497087503 0.0535196429141127 0.339537947551562 0.734204515083966 NA +FBgn0029827 0.441041016529908 0.00328835292490063 0.0651519390116612 0.0504720653718696 0.959746209627815 NA +FBgn0029828 0 NA NA NA NA NA +FBgn0029831 0.879358456771953 -0.0346440379331559 0.0793985170042417 -0.436331045469088 0.662596560245316 NA +FBgn0029835 0 NA NA NA NA NA +FBgn0029836 0 NA NA NA NA NA +FBgn0029837 0.728264709031243 0.0452944761335687 0.0770715043758158 0.587694200345485 0.556737569088752 NA +FBgn0029838 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0029839 0 NA NA NA NA NA +FBgn0029843 0.498339368791855 -0.0470103699493559 0.0757257465434786 -0.620797708773522 0.534732730978084 NA +FBgn0029859 0 NA NA NA NA NA +FBgn0029860 0 NA NA NA NA NA +FBgn0029863 0.511316717843023 -0.00442307088787168 0.0752260783320343 -0.0587970420091427 0.95311376452127 NA +FBgn0029906 0 NA NA NA NA NA +FBgn0029907 0 NA NA NA NA NA +FBgn0029920 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0029930 0.708531206599208 -0.0465337945891831 0.0696993531776911 -0.667635960272832 0.504365997416512 NA +FBgn0029931 0 NA NA NA NA NA +FBgn0029933 0 NA NA NA NA NA +FBgn0029940 0.598421750957653 0.0239356609588379 0.0710659588222304 0.33680909053394 0.736260819820432 NA +FBgn0029946 0.837610287385232 -0.0320058307996853 0.082441746946125 -0.388223587991177 0.697850578761671 NA +FBgn0029947 0 NA NA NA NA NA +FBgn0029948 0.421410057399673 0.0545542659034943 0.0546913150832727 0.997494132668601 0.318524720352748 NA +FBgn0029952 0.96898055839414 0.0581024556434341 0.0740677927903019 0.784449670424657 0.432776302911799 NA +FBgn0029961 0 NA NA NA NA NA +FBgn0029962 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +>>>>>>> add new deseq2 FBgn0029963 0 NA NA NA NA NA FBgn0029964 0 NA NA NA NA NA FBgn0029965 0 NA NA NA NA NA FBgn0029966 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0029987 1.02417521518207 0.13312085392773 0.106248230162839 1.25292302491727 0.210233721530284 NA FBgn0029993 0.0923751652987496 -0.0204895043498917 0.0402731934859522 -0.508762841393214 0.610918468289372 NA FBgn0029995 0.22457235082531 -0.0256917338023628 0.0424593607473281 -0.605089981341265 0.545119210714508 NA @@ -3887,12 +11036,70 @@ FBgn0030157 0.161724141252494 0.0323066554539976 0.0425491405673182 0.759278683969759 0.447685865955754 NA FBgn0030158 0.0923751652987496 -0.0204895043498917 0.0402731934859522 -0.508762841393214 0.610918468289372 NA FBgn0030159 0.0923751652987496 -0.0204895043498917 0.0402731934859522 -0.508762841393214 0.610918468289372 NA +======= +FBgn0029987 1.02417521518207 0.133120853958407 0.106248230175072 1.25292302506173 0.210233721477703 NA +FBgn0029993 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0029995 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0030009 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0030014 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0030015 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0030027 1.21894779257814 -0.0167196594269802 0.109976749492143 -0.152029037993842 0.879164032843015 NA +FBgn0030033 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0030058 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0030074 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030078 24.2253301322966 0.467329883679002 0.199783808842969 2.33917796635024 NA NA +FBgn0030080 0.325102132866858 -0.0427942206274209 0.0544585335092309 -0.78581294555365 0.431977081275793 NA +FBgn0030094 0 NA NA NA NA NA +FBgn0030097 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0030098 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030102 0 NA NA NA NA NA +FBgn0030103 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030104 0 NA NA NA NA NA +FBgn0030105 0.374776125491715 -0.00823837619565827 0.0547139970876783 -0.150571638596544 0.880313635396993 NA +FBgn0030107 0.598421750957653 0.0239356609588379 0.0710659588222304 0.33680909053394 0.736260819820432 NA +FBgn0030108 0.184750330597499 -0.0265336561228641 0.0431713090765736 -0.61461319312326 0.538810199526716 NA +FBgn0030117 0 NA NA NA NA NA +======= +FBgn0029987 1.02417521518207 0.133120853958407 0.106248230175072 1.25292302506173 0.210233721477703 NA +FBgn0029993 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0029995 0.22457235082531 -0.025691733802128 0.0424593607469425 -0.605089981341231 0.545119210714531 NA +FBgn0030009 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0030014 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0030015 0.173237235924997 0.00183995448109979 0.0429157231358386 0.0428736683587013 0.965802239049668 NA +FBgn0030027 1.21894779257814 -0.0167196594269802 0.109976749492143 -0.152029037993842 0.879164032843015 NA +FBgn0030033 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0030058 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0030074 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030078 24.2253301322966 0.467329883679002 0.199783808842969 2.33917796635024 NA NA +FBgn0030080 0.325102132866858 -0.0427942206274209 0.0544585335092309 -0.78581294555365 0.431977081275793 NA +FBgn0030094 0 NA NA NA NA NA +FBgn0030097 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0030098 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030102 0 NA NA NA NA NA +FBgn0030103 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030104 0 NA NA NA NA NA +FBgn0030105 0.374776125491715 -0.00823837619565827 0.0547139970876783 -0.150571638596544 0.880313635396993 NA +FBgn0030107 0.598421750957653 0.0239356609588379 0.0710659588222304 0.33680909053394 0.736260819820432 NA +FBgn0030108 0.184750330597499 -0.0265336561228641 0.0431713090765736 -0.61461319312326 0.538810199526716 NA +FBgn0030117 0 NA NA NA NA NA +>>>>>>> add new deseq2 +FBgn0030148 0.70811767213232 0.0684381710391799 0.092062758939206 0.743386053467866 0.457247985492376 NA +FBgn0030156 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0030157 0.161724141252494 0.0323066554537033 0.0425491405669316 0.759278683969739 0.447685865955766 NA +FBgn0030158 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0030159 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0030161 0 NA NA NA NA NA FBgn0030162 0 NA NA NA NA NA FBgn0030163 0 NA NA NA NA NA FBgn0030164 0 NA NA NA NA NA FBgn0030165 0 NA NA NA NA NA FBgn0030166 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0030167 0.181391852667795 0.000922878063802334 0.043122754627709 0.0214011853317304 0.982925628025152 NA FBgn0030172 0.571584351694598 0.0914784240511188 0.0705012127373223 1.2975439783136 0.194444083524556 NA FBgn0030173 0.37242916995233 0.0684153105429265 0.0613388136015833 1.11536735919458 0.264693030997608 NA @@ -3938,6 +11145,95 @@ FBgn0030338 1.40110596776989 0.078875322851723 0.106277327642232 0.742165093925262 0.457987314613554 NA FBgn0030339 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA FBgn0030356 0.24813606918961 0.0328712249937809 0.0428867883455157 0.766465064461231 0.443399631338715 NA +======= +FBgn0030167 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0030172 0.571584351694598 0.0914784240279396 0.0705012127281283 1.29754397815404 0.19444408357942 NA +FBgn0030173 0.37242916995233 0.0684153105362848 0.0613388135983296 1.11536735914546 0.264693031018646 NA +FBgn0030181 0.847484545506634 0.00029409383480985 0.0840860802477845 0.00349753293224295 0.997209378161955 NA +FBgn0030182 0.908192307320372 -0.0242104378093565 0.0955891186389691 -0.253276085751946 0.800054874565606 NA +FBgn0030186 0.875547246853902 -0.0220666997786538 0.0879581409239902 -0.25087728716007 0.801908985165678 NA +FBgn0030187 0.985243168028569 0.0125933536303559 0.101577717394118 0.123977521383888 0.901333073070807 NA +FBgn0030191 0 NA NA NA NA NA +FBgn0030192 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0030193 0.210705028699836 0.0343775297986814 0.043774172333087 0.785338202104552 0.432255303094243 NA +FBgn0030200 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030202 0 NA NA NA NA NA +FBgn0030204 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030207 1.25204543061683 0.11815244448043 0.104807797948817 1.12732493948713 0.259605121700859 NA +FBgn0030215 0.690796916256403 0.00840454885397165 0.0805291313733192 0.104366565373835 0.916878454715934 NA +FBgn0030219 0.821780379383256 -0.0221568869911361 0.0963304181740427 -0.230009247453952 0.818084583923226 NA +FBgn0030220 0.668210854873561 -0.0617316199488236 0.0837061900283506 -0.737479748247 0.460830654344737 NA +FBgn0030221 0 NA NA NA NA NA +FBgn0030222 0 NA NA NA NA NA +FBgn0030223 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030224 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0030247 0 NA NA NA NA NA +FBgn0030248 0.603691883141773 -0.0232589757449044 0.0859332239624061 -0.270663367117237 0.786649954220882 NA +FBgn0030249 1.36586370700876 0.112392564964395 0.109913543054009 1.02255428986733 0.306518631291833 NA +FBgn0030251 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030254 0 NA NA NA NA NA +FBgn0030257 0.415823447803738 0.0390015931521098 0.0594538468099831 0.655997807454924 0.511825534945522 NA +FBgn0030258 0 NA NA NA NA NA +FBgn0030259 0 NA NA NA NA NA +FBgn0030260 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030277 0 NA NA NA NA NA +FBgn0030278 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030280 0 NA NA NA NA NA +FBgn0030283 0 NA NA NA NA NA +FBgn0030290 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0030296 0.86387857602318 0.118623263572415 0.0926830445933094 1.27988095441761 0.200587006818316 NA +FBgn0030297 0 NA NA NA NA NA +======= +FBgn0030167 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0030172 0.571584351694598 0.0914784240279396 0.0705012127281283 1.29754397815404 0.19444408357942 NA +FBgn0030173 0.37242916995233 0.0684153105362848 0.0613388135983296 1.11536735914546 0.264693031018646 NA +FBgn0030181 0.847484545506634 0.00029409383480985 0.0840860802477845 0.00349753293224295 0.997209378161955 NA +FBgn0030182 0.908192307320372 -0.0242104378093565 0.0955891186389691 -0.253276085751946 0.800054874565606 NA +FBgn0030186 0.875547246853902 -0.0220666997786538 0.0879581409239902 -0.25087728716007 0.801908985165678 NA +FBgn0030187 0.985243168028569 0.0125933536303559 0.101577717394118 0.123977521383888 0.901333073070807 NA +FBgn0030191 0 NA NA NA NA NA +FBgn0030192 0.34051123448836 0.0191317511149171 0.0530946924961301 0.360332647492243 0.71859838761255 NA +FBgn0030193 0.210705028699836 0.0343775297986814 0.043774172333087 0.785338202104552 0.432255303094243 NA +FBgn0030200 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030202 0 NA NA NA NA NA +FBgn0030204 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030207 1.25204543061683 0.11815244448043 0.104807797948817 1.12732493948713 0.259605121700859 NA +FBgn0030215 0.690796916256403 0.00840454885397165 0.0805291313733192 0.104366565373835 0.916878454715934 NA +FBgn0030219 0.821780379383256 -0.0221568869911361 0.0963304181740427 -0.230009247453952 0.818084583923226 NA +FBgn0030220 0.668210854873561 -0.0617316199488236 0.0837061900283506 -0.737479748247 0.460830654344737 NA +FBgn0030221 0 NA NA NA NA NA +FBgn0030222 0 NA NA NA NA NA +FBgn0030223 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030224 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0030247 0 NA NA NA NA NA +FBgn0030248 0.603691883141773 -0.0232589757449044 0.0859332239624061 -0.270663367117237 0.786649954220882 NA +FBgn0030249 1.36586370700876 0.112392564964395 0.109913543054009 1.02255428986733 0.306518631291833 NA +FBgn0030251 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030254 0 NA NA NA NA NA +FBgn0030257 0.415823447803738 0.0390015931521098 0.0594538468099831 0.655997807454924 0.511825534945522 NA +FBgn0030258 0 NA NA NA NA NA +FBgn0030259 0 NA NA NA NA NA +FBgn0030260 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030277 0 NA NA NA NA NA +FBgn0030278 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030280 0 NA NA NA NA NA +FBgn0030283 0 NA NA NA NA NA +FBgn0030290 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0030296 0.86387857602318 0.118623263572415 0.0926830445933094 1.27988095441761 0.200587006818316 NA +FBgn0030297 0 NA NA NA NA NA +>>>>>>> add new deseq2 +FBgn0030298 0.810994409713253 -0.0464267208143386 0.0873250738938957 -0.531653953946256 0.594965688889682 NA +FBgn0030302 0.392096881367632 0.0417859393896295 0.0655298405162524 0.637662766465393 0.523693227867607 NA +FBgn0030303 0.328998139815857 0.053589369432798 0.0546082162581327 0.981342609315077 0.326423817221723 NA +FBgn0030304 0.565083585313669 -0.00698641075103853 0.0697280084528525 -0.100195185637096 0.920189368087451 NA +FBgn0030307 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030338 1.40110596776989 0.0788753228445738 0.106277327636385 0.742165093898825 0.45798731462957 NA +FBgn0030339 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030356 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0030370 0 NA NA NA NA NA FBgn0030374 0 NA NA NA NA NA FBgn0030375 0 NA NA NA NA NA @@ -3946,16 +11242,33 @@ FBgn0030385 0 NA NA NA NA NA FBgn0030386 0 NA NA NA NA NA FBgn0030389 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0030390 0.186214584976165 0.0356964168384409 0.0446847971135243 0.798849253981217 0.424377826807215 NA FBgn0030395 0 NA NA NA NA NA FBgn0030398 0.366142183265295 -0.0284444275180797 0.0637369882809818 -0.446278186108883 0.65539631143398 NA FBgn0030408 0 NA NA NA NA NA FBgn0030409 0 NA NA NA NA NA FBgn0030429 1.19237593910481 0.076494370556346 0.103109506521632 0.741875052425918 0.458163042335934 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0030390 0.186214584976165 0.035696416837727 0.0446847971128721 0.7988492539769 0.424377826809718 NA +FBgn0030395 0 NA NA NA NA NA +FBgn0030398 0.366142183265295 -0.0284444275212143 0.0637369882840396 -0.446278186136654 0.655396311413923 NA +FBgn0030408 0 NA NA NA NA NA +FBgn0030409 0 NA NA NA NA NA +FBgn0030429 1.19237593910481 0.0764943705527982 0.103109506518839 0.741875052411602 0.458163042344608 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0030437 0 NA NA NA NA NA FBgn0030439 0 NA NA NA NA NA FBgn0030440 0 NA NA NA NA NA FBgn0030441 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0030443 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA FBgn0030449 0.631222387582343 -0.0699185087565416 0.069025063203665 -1.01294378464009 0.31108701299193 NA FBgn0030462 0.0923751652987496 -0.0204895043498917 0.0402731934859522 -0.508762841393214 0.610918468289372 NA @@ -3989,11 +11302,61 @@ FBgn0030617 0.267076655602412 0.0501740190961892 0.0527678364632217 0.950844727756834 0.341683203371434 NA FBgn0030618 0.205882296391466 0.00423405052771355 0.0447574735163511 0.0945998555116551 0.924632664607429 NA FBgn0030619 0.080862070626247 0.0230872191457161 0.0399975247953908 0.577216196847676 0.563793416904323 NA +======= +======= +>>>>>>> add new deseq2 +FBgn0030443 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030449 0.631222387582343 -0.069918508729723 0.0690250631909992 -1.01294378443742 0.311087013088738 NA +FBgn0030462 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0030477 0.661041167025807 -0.00819847469940316 0.0850498198112658 -0.0963961442551719 0.923205954303339 NA +FBgn0030491 1.23119801662681 0.0641480244241913 0.107889436871621 0.594571871762773 0.552129686837968 NA +FBgn0030492 0 NA NA NA NA NA +FBgn0030493 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030494 0 NA NA NA NA NA +FBgn0030495 0 NA NA NA NA NA +FBgn0030509 0.105352514349918 0.0254741503089926 0.040583050041178 0.627704183967076 0.530197743974527 NA +FBgn0030536 1.19456732550319 -0.0654391021551412 0.0865521046423288 -0.756065983901423 0.449609635388738 NA +FBgn0030537 0.0923751652987496 -0.0204895043497049 0.040273193485586 -0.5087628413932 0.610918468289381 NA +FBgn0030538 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +FBgn0030539 0.181391852667795 0.000922878063793952 0.0431227546273171 0.0214011853317305 0.982925628025152 NA +FBgn0030540 0 NA NA NA NA NA +FBgn0030541 0 NA NA NA NA NA +FBgn0030542 0.24813606918961 0.0328712249934809 0.0428867883451263 0.766465064461196 0.443399631338737 NA +FBgn0030543 0 NA NA NA NA NA +FBgn0030544 0 NA NA NA NA NA +FBgn0030551 0.700889780748892 0.0020840503361408 0.0848780550075907 0.0245534648025856 0.980411137804398 NA +FBgn0030558 0.100529782041548 -0.0209903901433803 0.0404598159836309 -0.518795986414583 0.603903017085169 NA +FBgn0030563 0 NA NA NA NA NA +FBgn0030566 0 NA NA NA NA NA +FBgn0030569 0.953050839550445 0.0285435775734393 0.0975885126788574 0.292489113625187 0.76991268222557 NA +FBgn0030570 0 NA NA NA NA NA +FBgn0030577 0.269423611141796 -0.026592624307814 0.0432208120592152 -0.615273592531775 0.538374054087345 NA +FBgn0030578 0 NA NA NA NA NA +FBgn0030595 0.90385617240921 0.0140835782037349 0.0874061821492121 0.161127941496091 0.87199263363864 NA +FBgn0030608 0 NA NA NA NA NA +FBgn0030614 0.210705028699836 0.0343775297986814 0.043774172333087 0.785338202104552 0.432255303094243 NA +FBgn0030617 0.267076655602412 0.0501740190928278 0.0527678364612048 0.950844727729477 0.341683203385323 NA +FBgn0030618 0.205882296391466 0.00423405052709174 0.0447574735119474 0.09459985550707 0.924632664611071 NA +FBgn0030619 0.080862070626247 0.023087219145506 0.0399975247950268 0.577216196847677 0.563793416904322 NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +>>>>>>> add new deseq2 +======= +>>>>>>> add new deseq2 FBgn0030620 0 NA NA NA NA NA FBgn0030621 0 NA NA NA NA NA FBgn0030622 0 NA NA NA NA NA FBgn0030623 0 NA NA NA NA NA FBgn0030624 0 NA NA NA NA NA FBgn0030640 0 NA NA NA NA NA +<<<<<<< 32814b042e5c76fbb4786cff0edf98023718d3b2 +<<<<<<< c2d5ab40b214e429d8a9d0c5b2b35adfc46a87e6 FBgn0030663 1.2590203447849 0.0316273222798865 0.104066953284795 0.303913214345129 0.761194010092697 NA FBgn0030688 0.827337508607711 0.0122149676539822 0.0936309991990391 0.130458584854102 0.896203618553293 NA +======= +FBgn0030663 1.2590203447849 0.0316273222752506 0.104066953276194 0.303913214325699 0.7611940101075 NA +FBgn0030688 0.827337508607711 0.0122149676551879 0.0936309992070552 0.13045858485581 0.896203618551941 NA +>>>>>>> add new deseq2 +======= +FBgn0030663 1.2590203447849 0.0316273222752506 0.104066953276194 0.303913214325699 0.7611940101075 NA +FBgn0030688 0.827337508607711 0.0122149676551879 0.0936309992070552 0.13045858485581 0.896203618551941 NA +>>>>>>> add new deseq2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/deseq2_tximport_out.tab Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,4 @@ +WASH7P 9900.55558083217 -4.23770412981225 0.206202033070674 -20.5512238007848 7.50472789083548e-94 3.00189115633419e-93 +DDX11L1 537.947385623122 0.311741396087371 0.207236221043698 1.50428045115548 0.132509170400216 0.265018340800432 +MIR6859-1 1535.69554043224 0.215149819818111 0.188163332682435 1.1434205418822 0.252864027682612 0.337152036910149 +MIR6859-2 80.7433269754715 -0.177756822115013 0.275440925762787 -0.645353705600378 0.51869799671008 0.51869799671008
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genes_sub.gtf Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,15 @@ +chr1 unknown exon 11874 12227 . + . gene_id "DDX11L1"; gene_name "DDX11L1"; transcript_id "NM_001168316"; tss_id "TSS16107"; +chr1 unknown exon 12613 12721 . + . gene_id "DDX11L1"; gene_name "DDX11L1"; transcript_id "NM_174914"; tss_id "TSS16107"; +chr1 unknown exon 13221 14409 . + . gene_id "DDX11L1"; gene_name "DDX11L1"; transcript_id "NR_031764"; tss_id "TSS16107"; +chr1 unknown exon 14362 14829 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_004503"; tss_id "TSS8151"; +chr1 unknown exon 14970 15038 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_006897"; tss_id "TSS8151"; +chr1 unknown exon 15796 15947 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_014212"; tss_id "TSS8151"; +chr1 unknown exon 16607 16765 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_014620"; tss_id "TSS8151"; +chr1 unknown exon 16858 17055 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_017409"; tss_id "TSS8151"; +chr1 unknown exon 17233 17368 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_017410"; tss_id "TSS8151"; +chr1 unknown exon 17369 17436 . - . gene_id "MIR6859-2"; gene_name "MIR6859-2"; transcript_id "NM_018953"; tss_id "TSS24460"; +chr1 unknown exon 17369 17436 . - . gene_id "MIR6859-1"; gene_name "MIR6859-1"; transcript_id "NM_022658"; tss_id "TSS24460"; +chr1 unknown exon 17606 17742 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_153633"; tss_id "TSS8151"; +chr1 unknown exon 17915 18061 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_153693"; tss_id "TSS8151"; +chr1 unknown exon 18268 18366 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NM_173860"; tss_id "TSS8151"; +chr1 unknown exon 24738 24891 . - . gene_id "WASH7P"; gene_name "WASH7P"; transcript_id "NR_003084"; tss_id "TSS8151";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/normalized_readcounts.tab Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,4000 @@ + 1: Untreated 2: Untreated 3: Untreated 4: Untreated 5: Treated 6: Treated 7: Treated +FBgn0000003 0 0 0 0 0 0 0 +FBgn0000008 28.2894791698886 51.3707186232312 36.8576909542011 45.5881872175379 33.0020972022181 50.8852644310105 33.39603516864 +FBgn0000014 0 2.81483389716335 0 0 0 1.47493520089885 1.13206898876746 +FBgn0000015 0 0 0.646626157091247 0 0 0 0 +FBgn0000017 2314.07939609689 2481.27608034949 1832.5385291966 1906.8438308577 1702.21343464072 1751.48555106739 1793.76331270204 +FBgn0000018 173.508805575317 165.371491458347 176.528940885911 179.208735958597 185.853915823018 173.304886105615 153.395347977991 +FBgn0000022 1.88596527799258 0 0 0 0 0 0 +FBgn0000024 0 2.11112542287251 1.29325231418249 4.7160193673315 1.73695248432727 1.47493520089885 0.566034494383729 +FBgn0000028 0 0 0 0 0 0.737467600449427 0.566034494383729 +FBgn0000032 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548.630253066231 474.188028221345 550.888297535722 558.676045956741 +FBgn0030634 7.5438611119703 2.81483389716335 1.93987847127374 3.14401291155433 3.47390496865454 0 0 +FBgn0030636 7.5438611119703 5.6296677943267 3.87975694254748 1.57200645577717 1.73695248432727 5.16227320314599 5.09431044945356 +FBgn0030638 290.438652810857 409.558332037268 425.480011366041 435.445788250275 406.446881332581 488.94101909797 517.921562361112 +FBgn0030640 0 0 0 0 0 0 0 +FBgn0030641 9.42982638996288 5.6296677943267 1.29325231418249 6.28802582310867 5.21085745298181 2.94987040179771 2.26413797753492 +FBgn0030642 9.42982638996288 14.0741694858168 6.46626157091247 6.28802582310867 3.47390496865454 12.5369492076403 9.62258640452339 +FBgn0030643 1.88596527799258 4.22225084574503 4.52638309963873 4.7160193673315 3.47390496865454 1.47493520089885 2.26413797753492 +FBgn0030645 43.3772013938292 38.7039660859961 35.5644386400186 45.5881872175379 46.8977170768363 47.1979264287634 36.2262076405587 +FBgn0030646 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453.344598409417 523.601996319093 483.393458203705 +FBgn0030659 209.342145857176 197.742081275725 206.920370269199 193.356794060592 187.590868307345 212.390668929435 220.753452809654 +FBgn0030660 56.5789583397773 61.9263457375937 58.1963541382123 95.8923938024072 81.6367667633817 84.0713064512347 66.79207033728 +FBgn0030661 7.5438611119703 15.4815864343984 6.46626157091247 7.86003227888584 19.1064773276 7.37467600449427 16.9810348315119 +FBgn0030662 254.605312528998 320.187355802331 268.996481349959 169.776697223934 305.703637241599 420.356532256174 442.072940113692 +FBgn0030663 0 3.51854237145419 0.646626157091247 0 0 2.94987040179771 1.69810348315119 +FBgn0030664 9.42982638996288 2.81483389716335 8.40614004218622 3.14401291155433 8.68476242163635 3.68733800224714 6.22637943822102 +FBgn0030665 3.77193055598515 2.81483389716335 1.93987847127374 3.14401291155433 1.73695248432727 0.737467600449427 1.13206898876746 +FBgn0030666 9.42982638996288 10.5556271143626 10.34601851346 7.86003227888584 1.73695248432727 0.737467600449427 2.26413797753492 +FBgn0030667 62.236854173755 20.4075457544343 38.7975694254748 42.4441743059835 79.8998142790544 50.1477968305611 40.7544835956285 +FBgn0030668 122.587743069517 96.4080609778448 128.031979104067 124.188510006396 85.1106717320362 102.50799646247 100.754140000304 +FBgn0030669 101.842125011599 102.037728772172 118.332586747698 117.900484183288 99.0062916066544 79.6465008485382 83.7731051687919 +FBgn0030670 284.780756976879 270.927762601973 307.147424618343 388.28559457696 267.4906825864 238.202034945165 245.092936068155 +FBgn0030671 124.47370834751 156.223281292566 154.543651544808 122.616503550619 177.169153401382 130.531765279549 116.037071348664 +FBgn0030672 2595.08822251778 3063.94669706231 3163.29516049038 3188.0290923161 2079.13212373974 2461.66685030019 2495.64608573786 +FBgn0030673 41.4912361158367 28.8520474459244 38.7975694254748 48.7322001290922 36.4760021708727 32.4485744197748 37.3582766293261 +FBgn0030674 3815.30775737898 5111.03464877436 3873.29068097657 4261.7095016119 3661.49583696188 4747.81641169341 4215.25887967563 +FBgn0030675 26.4035138918961 33.7780067659602 47.2037094676611 33.0121355713205 31.2651447178909 35.3984448215725 43.0186215731634 +FBgn0030676 7.5438611119703 6.33337626861754 3.87975694254748 0 12.1586673902909 0.737467600449427 5.09431044945356 +FBgn0030678 84.8684375096659 121.037857578024 89.8810358356834 119.472490639065 59.0563844671272 106.195334464718 106.414484944141 +FBgn0030679 224.429868081116 172.408576201255 223.732650353572 172.920710135488 125.060578871563 197.641316920447 209.998797416364 +FBgn0030680 256.49127780699 264.594386333355 229.552285767393 240.516987733907 218.856013025236 240.414437746513 251.885350000759 +FBgn0030683 84.8684375096659 99.2228948750082 112.512951333877 160.344658489271 105.954101543963 126.106959676852 109.810691910443 +FBgn0030684 0 5.6296677943267 0.646626157091247 4.7160193673315 0 1.47493520089885 0 +FBgn0030685 1250.39497930908 987.302989430046 914.329386127024 1183.72086120021 769.469950556981 778.765786074595 796.976568092291 +FBgn0030686 237.631625027064 188.593871109945 219.206267253933 216.936890897249 149.377913652145 198.378784520896 189.055521124166 +FBgn0030687 275.350930586916 366.632115105527 344.005115572544 400.861646223178 281.386302461018 396.757569041792 382.639318203401 +FBgn0030688 0 0.703708474290838 0.646626157091247 1.57200645577717 1.73695248432727 0 1.13206898876746 +FBgn0030691 13.201756945948 11.2593355886534 5.17300925672998 14.1480581019945 12.1586673902909 14.7493520089885 7.35844842698848 +FBgn0030692 350.789541706619 343.409735453929 347.884872515091 378.853555842297 295.281922335636 367.996332624264 353.771558989831 +FBgn0030693 179.166701409295 128.074942320933 156.483530016082 198.072813427923 217.119060540909 143.068714487189 133.58414067456 +FBgn0030694 111.271951401562 99.926603349299 108.63319439133 86.4603550677442 104.217149059636 81.8589036498864 119.999312809351
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sailfish_quant_result1.tab Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,32 @@ +# sailfish (quasi-mapping-based) v0.7.6 +# [ program ] => sailfish +# [ command ] => quant +# [ index ] => { ./index_dir } +# [ mates1 ] => { ./mate1.fastq } +# [ mates2 ] => { ./mate2.fastq } +# [ libType ] => { IU } +# [ output ] => { ./ } +# [ biasCorrect ] => { } +# [ threads ] => { 1 } +# [ fldMean ] => { 200 } +# [ fldSD ] => { 80 } +# [ maxReadOcc ] => { 200 } +# [ maxFragLen ] => { 1000 } +# [ txpAggregationKey ] => { gene_id } +# [ mapping rate ] => { 100% } +# Name Length TPM NumReads +NM_001168316 2283 12398.5 159.361 +NM_174914 2385 111257 1500.04 +NR_031764 1853 10254.5 104.595 +NM_004503 1681 36198.8 330.806 +NM_006897 1541 80244.3 664 +NM_014212 2037 4852.08 55 +NM_014620 2300 45132.7 584.838 +NM_017409 1959 4330.19 47 +NM_017410 2396 3099.5 42 +NM_018953 1612 26168.3 228 +NM_022658 2288 378838 4881 +NM_153633 1666 40578.4 367.074 +NM_153693 2072 6430.57 74.2815 +NM_173860 849 240218 962 +NR_003084 1640 0 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sailfish_quant_result2.tab Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,32 @@ +# sailfish (quasi-mapping-based) v0.7.6 +# [ program ] => sailfish +# [ command ] => quant +# [ index ] => { ./index_dir } +# [ mates1 ] => { ./mate1.fastq } +# [ mates2 ] => { ./mate2.fastq } +# [ libType ] => { IU } +# [ output ] => { ./ } +# [ biasCorrect ] => { } +# [ threads ] => { 1 } +# [ fldMean ] => { 200 } +# [ fldSD ] => { 80 } +# [ maxReadOcc ] => { 200 } +# [ maxFragLen ] => { 1000 } +# [ txpAggregationKey ] => { gene_id } +# [ mapping rate ] => { 100% } +# Name Length TPM NumReads +NM_001168316 2283 1239.5 159.361 +NM_174914 2385 11125 1505.04 +NR_031764 1853 1025.5 100.595 +NM_004503 1681 3619.8 320.806 +NM_006897 1541 8224.3 660 +NM_014212 2037 485.08 60 +NM_014620 2300 4513.7 580.838 +NM_017409 1959 433.19 45 +NM_017410 2396 3219.5 40 +NM_018953 1612 2616.3 220 +NM_022658 2288 37883 4880 +NM_153633 1666 4057.4 360.074 +NM_153693 2072 643.57 70.2815 +NM_173860 849 2521 960 +NR_003084 1640 1000 10
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sailfish_quant_result3.tab Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,32 @@ +# sailfish (quasi-mapping-based) v0.7.6 +# [ program ] => sailfish +# [ command ] => quant +# [ index ] => { ./index_dir } +# [ mates1 ] => { ./mate1.fastq } +# [ mates2 ] => { ./mate2.fastq } +# [ libType ] => { IU } +# [ output ] => { ./ } +# [ biasCorrect ] => { } +# [ threads ] => { 1 } +# [ fldMean ] => { 200 } +# [ fldSD ] => { 80 } +# [ maxReadOcc ] => { 200 } +# [ maxFragLen ] => { 1000 } +# [ txpAggregationKey ] => { gene_id } +# [ mapping rate ] => { 100% } +# Name Length TPM NumReads +NM_001168316 2283 12398.5 15.361 +NM_174914 2385 121257 150.04 +NR_031764 1853 14254.5 10.595 +NM_004503 1681 30198.8 30.806 +NM_006897 1541 70244.3 64 +NM_014212 2037 4452.08 555 +NM_014620 2300 42132.7 54.838 +NM_017409 1959 4230.19 475 +NM_017410 2396 3199.5 423 +NM_018953 1612 29168.3 28 +NM_022658 2288 318838 481 +NM_153633 1666 41578.4 3367.074 +NM_153693 2072 6430.57 742.2815 +NM_173860 849 240218 92 +NR_003084 1640 0 90
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sailfish_quant_result4.tab Wed Nov 09 17:00:31 2016 -0500 @@ -0,0 +1,32 @@ +# sailfish (quasi-mapping-based) v0.7.6 +# [ program ] => sailfish +# [ command ] => quant +# [ index ] => { ./index_dir } +# [ mates1 ] => { ./mate1.fastq } +# [ mates2 ] => { ./mate2.fastq } +# [ libType ] => { IU } +# [ output ] => { ./ } +# [ biasCorrect ] => { } +# [ threads ] => { 1 } +# [ fldMean ] => { 200 } +# [ fldSD ] => { 80 } +# [ maxReadOcc ] => { 200 } +# [ maxFragLen ] => { 1000 } +# [ txpAggregationKey ] => { gene_id } +# [ mapping rate ] => { 100% } +# Name Length TPM NumReads +NM_001168316 2283 12398.5 15.361 +NM_174914 2385 111260 120.04 +NR_031764 1853 10300.5 12.595 +NM_004503 1681 36250.8 32.806 +NM_006897 1541 80900.3 75 +NM_014212 2037 4900.08 540 +NM_014620 2300 45300.7 51.838 +NM_017409 1959 4400.19 470 +NM_017410 2396 3500.5 420 +NM_018953 1612 26568.3 30 +NM_022658 2288 378938 480 +NM_153633 1666 40878.4 3350.074 +NM_153693 2072 6830.57 740.2815 +NM_173860 849 240818 90 +NR_003084 1640 20 95