Mercurial > repos > iuc > dexseq
comparison dexseq_count.xml @ 3:f89c9b25feb4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit e785d126b23609208b055fb8902f3b9368e9b839
author | iuc |
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date | Sat, 28 Jul 2018 03:44:02 -0400 |
parents | 6e8b61c54ff3 |
children | 251393b72616 |
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2:6e8b61c54ff3 | 3:f89c9b25feb4 |
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76 <param name="mode_select" value="prepare" /> | 76 <param name="mode_select" value="prepare" /> |
77 <param name="gtffile" ftype="gff" value="original.gtf"/> | 77 <param name="gtffile" ftype="gff" value="original.gtf"/> |
78 <param name="aggregate" value="True"/> | 78 <param name="aggregate" value="True"/> |
79 <output name="flattened_gtf_out" ftype="gtf" compare="sim_size" file="flattened.gtf"/> | 79 <output name="flattened_gtf_out" ftype="gtf" compare="sim_size" file="flattened.gtf"/> |
80 </test> | 80 </test> |
81 <!-- Ensure count mode works --> | |
82 <test> | |
83 <param name="mode_select" value="count" /> | |
84 <param name="bamfile" ftype="bam" value="in.bam" /> | |
85 <param name="flattened_gtf_in" ftype="gff" value="flattened.gtf"/> | |
86 <output name="counts_file" ftype="tabular" file="out_count.tab"/> | |
87 </test> | |
81 </tests> | 88 </tests> |
82 | 89 |
83 <help><![CDATA[ | 90 <help><![CDATA[ |
84 .. class:: infomark | 91 .. class:: infomark |
85 | 92 |