# HG changeset patch
# User iuc
# Date 1532763842 14400
# Node ID f89c9b25feb4a5eb9fb3490e1243686101d3a879
# Parent  6e8b61c54ff385bf0bcc3f725498940631f15d25
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit e785d126b23609208b055fb8902f3b9368e9b839

diff -r 6e8b61c54ff3 -r f89c9b25feb4 dexseq_count.xml
--- a/dexseq_count.xml	Sun Jan 28 04:04:39 2018 -0500
+++ b/dexseq_count.xml	Sat Jul 28 03:44:02 2018 -0400
@@ -78,6 +78,13 @@
             <param name="aggregate" value="True"/>
             <output name="flattened_gtf_out" ftype="gtf" compare="sim_size" file="flattened.gtf"/>
         </test>
+        <!-- Ensure count mode works -->
+        <test>
+            <param name="mode_select" value="count" />
+            <param name="bamfile" ftype="bam" value="in.bam" />
+            <param name="flattened_gtf_in" ftype="gff" value="flattened.gtf"/>
+            <output name="counts_file" ftype="tabular" file="out_count.tab"/>
+        </test>
     </tests>
 
     <help><![CDATA[
diff -r 6e8b61c54ff3 -r f89c9b25feb4 test-data/in.bam
Binary file test-data/in.bam has changed
diff -r 6e8b61c54ff3 -r f89c9b25feb4 test-data/out_count.tab
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_count.tab	Sat Jul 28 03:44:02 2018 -0400
@@ -0,0 +1,222 @@
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