# HG changeset patch
# User iuc
# Date 1708001427 0
# Node ID 40edef7d7f741eb9e8fdf5812a8464879c0ed948
# Parent b97f326c055d705c87d14c064204ac2d7d794735
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 30fe10acdf65c6917856a0eae21dc91abd2f609f
diff -r b97f326c055d -r 40edef7d7f74 dimet_timecourse_analysis.xml
--- a/dimet_timecourse_analysis.xml Tue Jan 23 14:56:42 2024 +0000
+++ b/dimet_timecourse_analysis.xml Thu Feb 15 12:50:27 2024 +0000
@@ -39,7 +39,7 @@
'++analysis.method.impute_values=${impute_values}'
'++analysis.dataset.subfolder='
'++analysis.dataset.label='
- '++analysis.dataset.conditions=${conds}'
+ '++analysis.dataset.conditions=${conditions}'
#if $metadata_path:
'++analysis.dataset.metadata=metadata'
#end if
@@ -64,7 +64,7 @@
]]>
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The output consists of tables with the computed metrics, one by each pair of timepoints compared.
The number of output tables = number-of-conditions x (number-of-timepoints)-1 x number-of-compartments.
+For more information about the implemented statistical tests, please visit: https://github.com/cbib/DIMet/wiki/2-Statistical-tests
+
+The output files are explained in https://github.com/cbib/DIMet/wiki/3-Output
+
**Available data for testing**
-You can test our tool with the data from our manuscript https://zenodo.org/record/8378887 (the pertinent
+You can test our tool with the data from our manuscript https://zenodo.org/record/10579862 (the pertinent
files for you are located in the subfolders inside the data folder).
-You can also use the minimal data examples from https://zenodo.org/record/8380706
+You can also use the minimal data examples from https://zenodo.org/record/10579891
]]>
diff -r b97f326c055d -r 40edef7d7f74 macros.xml
--- a/macros.xml Tue Jan 23 14:56:42 2024 +0000
+++ b/macros.xml Thu Feb 15 12:50:27 2024 +0000
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- 0.1.4
+ 0.2.1
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+ label="Select Metabolite(s) for condition 1 to plot (1 Min.). You have to load a abundance file prior to have access to metabolite list">
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+ label="Select Metabolite(s) for condition 1 to plot (1 Min.). You have to load a abundance file prior to have access to metabolite list">
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+ label="Select Metabolite(s) for condition 1 to plot (1 min). You have to load a abundance file prior to have access to metabolite list">
@@ -348,8 +423,8 @@
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+ label="Select Metabolite(s) for condition 1 to plot (1 Min.). You have to load a abundance file prior to have access to metabolite list">
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+ 1:
+ #if len($timepoints) > 0:
+ #for $tp in $timepoint:
+ #set $ctrl_found=False
+ #set $ctrl=""
+ #set $comparisons_bis = list()
+
+ #for $co in $conditions:
+ #set $sub_comparisons = list()
+ #if str($co) in ["'Control'", "'control'", "'ctrl'"]:
+ #set $ctrl_found=True
+ #set $ctrl=str($co)
+ #else:
+ $sub_comparisons.append(re.sub('"', '', str($co)))
+ $sub_comparisons.append(re.sub('"', '', str($tp)))
+
+ #end if
+ $comparisons_bis.append($sub_comparisons)
+ #end for
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+ #if $ctrl_found:
+ $sub_comparisons.append(str($ctrl))
+ $sub_comparisons.append(str($tp))
+ $comparisons_bis.append($sub_comparisons)
+ #end if
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+ $comparisons.append($comparisons_bis)
+ #end for
+ #else
+ #for $co in $conditions:
+ $comparisons.append(re.sub('"', '', str($co)))
+ #end for
+ #end if
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+ #else
+ #if len($conditions) > 0:
+ #if len($timepoints) > 1:
+ #for $co in $conditions:
+ #set $comparisons_bis = list()
+ #for $tp in $timepoint:
+ #set $sub_comparisons = list()
+ $sub_comparisons.append(re.sub('"', '', str($co)))
+ $sub_comparisons.append(re.sub('"', '', str($tp)))
+ $comparisons_bis.append($sub_comparisons)
+ #end for
+ $comparisons.append($comparisons_bis)
+ #end for
+ #end if
+ #else
+ #for $tp in $timepoint:
+ $comparisons.append(re.sub('"', '', str($tp)))
+ #end for
+ #end if
+ #end if
+ ]]>