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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit d9fc31caa31f1f0c63a0dd5ffe136d765d607080"
author iuc
date Sun, 18 Apr 2021 17:48:28 +0000
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6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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1 DISCO memory usage
6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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2 ==================
6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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5 By default, this tool is configured to limit the memory consumption to 4G.
6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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6 You might need to lower this limit if the machine(s) executing the jobs have less memory available.
6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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7 If you have a lot of reads to assemble and a machine with enough memory, you can increase it.
6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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9 In both cases, you can set the DISCO_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file::
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6d447ebb2bf4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
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11 <?xml version="1.0"?>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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12 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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13 <job_conf>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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14 <plugins>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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15 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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16 </plugins>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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17 <handlers>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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18 <handler id="main"/>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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19 </handlers>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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20 <destinations>
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21 <destination id="local" runner="local">
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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22 <env id="DISCO_MAX_MEMORY">4</env>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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23 </destination>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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24 </destinations>
6de3e77073ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
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25 </job_conf>