Mercurial > repos > iuc > disco
comparison README.rst @ 0:6d447ebb2bf4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit c1327b5793477da611684e92e0ce4635370c7666
| author | iuc |
|---|---|
| date | Fri, 03 Nov 2017 15:44:23 -0400 |
| parents | |
| children | 6de3e77073ad |
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| -1:000000000000 | 0:6d447ebb2bf4 |
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| 1 DISCO memory usage | |
| 2 ================== | |
| 3 | |
| 4 | |
| 5 By default, this tool is configured to limit the memory consumption to 4G. | |
| 6 You might need to lower this limit if the machine(s) executing the jobs have less memory available. | |
| 7 If you have a lot of reads to assemble and a machine with enough memory, you can increase it. | |
| 8 | |
| 9 In both cases, you can set the DISCO_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file: | |
| 10 | |
| 11 ``` | |
| 12 <?xml version="1.0"?> | |
| 13 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). --> | |
| 14 <job_conf> | |
| 15 <plugins> | |
| 16 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> | |
| 17 </plugins> | |
| 18 <handlers> | |
| 19 <handler id="main"/> | |
| 20 </handlers> | |
| 21 <destinations> | |
| 22 <destination id="local" runner="local"> | |
| 23 <env id="DISCO_MAX_MEMORY">4</env> | |
| 24 </destination> | |
| 25 </destinations> | |
| 26 </job_conf> | |
| 27 ``` | |
| 28 |