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comparison README.rst @ 1:6de3e77073ad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ commit 43935edeb0abb95b08b191b379e160ec25cb33c0
author iuc
date Wed, 02 May 2018 05:47:09 -0400
parents 6d447ebb2bf4
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5 By default, this tool is configured to limit the memory consumption to 4G. 5 By default, this tool is configured to limit the memory consumption to 4G.
6 You might need to lower this limit if the machine(s) executing the jobs have less memory available. 6 You might need to lower this limit if the machine(s) executing the jobs have less memory available.
7 If you have a lot of reads to assemble and a machine with enough memory, you can increase it. 7 If you have a lot of reads to assemble and a machine with enough memory, you can increase it.
8 8
9 In both cases, you can set the DISCO_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file: 9 In both cases, you can set the DISCO_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file::
10 10
11 ``` 11 <?xml version="1.0"?>
12 <?xml version="1.0"?> 12 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->
13 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). --> 13 <job_conf>
14 <job_conf> 14 <plugins>
15 <plugins> 15 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
16 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> 16 </plugins>
17 </plugins> 17 <handlers>
18 <handlers> 18 <handler id="main"/>
19 <handler id="main"/> 19 </handlers>
20 </handlers> 20 <destinations>
21 <destinations> 21 <destination id="local" runner="local">
22 <destination id="local" runner="local"> 22 <env id="DISCO_MAX_MEMORY">4</env>
23 <env id="DISCO_MAX_MEMORY">4</env> 23 </destination>
24 </destination> 24 </destinations>
25 </destinations> 25 </job_conf>
26 </job_conf>
27 ```
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