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annotate test-data/annotated1.gff @ 3:e12898633ceb draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit 3234c3d93fa294fa9c2c5148eae4b399d42904d8
author iuc
date Fri, 23 Aug 2024 08:18:06 +0000
parents f9a3ea1c618c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
1 ##gff-version 3
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
2 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 478 1935 128.32 + 0 ID=dataset_5327_scaffold_1510_1;conf=100.00;cscore=116.40;gc_cont=0.437;partial=00;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;rscore=4.78;sscore=11.92;start_type=ATG;tscore=2.70;uscore=4.44
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
3 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 2271 3857 216.97 + 0 ID=dataset_5327_scaffold_1510_2;conf=99.99;cscore=204.79;gc_cont=0.522;partial=00;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;rscore=6.26;sscore=12.18;start_type=ATG;tscore=2.70;uscore=3.87
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
4 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 4217 5395 100.23 + 0 ID=dataset_5327_scaffold_1510_3;conf=100.00;cscore=107.40;gc_cont=0.520;partial=00;rbs_motif=None;rbs_spacer=None;rscore=-11.04;sscore=-7.17;start_type=ATG;tscore=2.70;uscore=1.83
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
5 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 5385 6587 141.67 + 0 ID=dataset_5327_scaffold_1510_4;conf=100.00;cscore=125.51;gc_cont=0.526;partial=00;rbs_motif=GGAGG;rbs_spacer=5-10bp;rscore=12.15;sscore=16.15;start_type=ATG;tscore=2.70;uscore=0.08
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
6 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 6684 8315 209.17 + 0 ID=dataset_5327_scaffold_1510_5;conf=99.99;cscore=189.80;Dbxref="ko:K00179";gc_cont=0.559;partial=00;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;rscore=8.35;sscore=19.37;start_type=ATG;tscore=2.70;uscore=8.32
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
7 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 8453 9043 86.60 + 0 ID=dataset_5327_scaffold_1510_6;conf=100.00;cscore=72.66;Dbxref="ko:K00180";gc_cont=0.584;partial=00;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;rscore=8.35;sscore=13.94;start_type=ATG;tscore=2.70;uscore=2.89
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
8 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 9217 9381 10.26 + 0 ID=dataset_5327_scaffold_1510_7;conf=91.36;cscore=6.45;gc_cont=0.491;partial=00;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;rscore=3.10;sscore=3.81;start_type=GTG;tscore=-4.98;uscore=5.69
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
9 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 9671 10636 92.34 - 0 ID=dataset_5327_scaffold_1510_8;conf=100.00;cscore=90.86;gc_cont=0.475;partial=00;rbs_motif=AGGA;rbs_spacer=5-10bp;rscore=0.52;sscore=1.48;start_type=TTG;tscore=-1.88;uscore=3.50
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
10 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 10802 11086 32.01 + 0 ID=dataset_5327_scaffold_1510_9;conf=99.94;cscore=15.94;gc_cont=0.474;partial=00;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;rscore=6.26;sscore=16.08;start_type=ATG;tscore=2.70;uscore=7.11
f9a3ea1c618c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
11 dataset_5327_scaffold_1510 Prodigal_v2.6.3 CDS 11386 11451 6.71 + 0 ID=dataset_5327_scaffold_1510_10;conf=82.39;cscore=-2.06;Dbxref="ko:K03666";gc_cont=0.318;partial=01;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;rscore=6.26;sscore=8.77;start_type=ATG;tscore=2.70;uscore=4.81