Mercurial > repos > iuc > drep_dereplicate

changeset 8:d730086e1432 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/drep commit 620124793ed18545728d07cfd8592065bc5c6c2d
author iuc
date Fri, 21 Mar 2025 07:04:54 +0000
parents 76b57044069d
children 81ada02ffe46
files drep_dereplicate.xml macros.xml
diffstat 2 files changed, 12 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/drep_dereplicate.xml	Mon Jan 13 12:45:07 2025 +0000
+++ b/drep_dereplicate.xml	Fri Mar 21 07:04:54 2025 +0000
@@ -8,15 +8,17 @@
         <requirement type="package" version="1.2.2">checkm-genome</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
-@PREPARE_GENOMES@
-dRep dereplicate outdir
-@GENOMES@
-@FILTER_OPTIONS@
-@QUALITY_ASSESSMENT_OPTIONS@
-@COMPARISON_CLUSTERING_OPTIONS@
-@SCORING_OPTIONS@
-@WARNING_OPTIONS@
---debug
+    @PREPARE_GENOMES@
+    dRep
+        dereplicate 
+        outdir
+        @GENOMES@
+        @FILTER_OPTIONS@
+        @QUALITY_ASSESSMENT_OPTIONS@
+        @COMPARISON_CLUSTERING_OPTIONS@
+        @SCORING_OPTIONS@
+        @WARNING_OPTIONS@
+        --processors \${GALAXY_SLOTS:-1}
 || (rc=\$?;
     ls -ltr `find outdir -type f`;
     cat outdir/data/checkM/checkM_outdir/checkm.log;
--- a/macros.xml	Mon Jan 13 12:45:07 2025 +0000
+++ b/macros.xml	Fri Mar 21 07:04:54 2025 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">3.5.0</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">20.01</token>
     <xml name="biotools">
         <xrefs>