Mercurial > repos > iuc > duplex_family_size_distribution

view test-data/fsd_reg_output.tab @ 0:7fc3c8704c05 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fsd commit 4cdd9c109b2c38474ef084ec92f3b56e0f73a760"
author iuc
date Thu, 24 Oct 2019 09:36:09 -0400
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Dataset:	fsd_reg.tab
	AB	BA
max. family size:	11	35
absolute frequency:	22	2
relative frequency:	0.333	0.167

total nr. of reads	1312
total nr. of tags	24 (12)


Values from family size distribution
	ACH_TDII_5regions_90_633	ACH_TDII_5regions_659_1140	
FS=4	4	0	
FS=5	4	0	
FS=6	0	0	
FS=7	6	0	
FS=8	0	0	
FS=9	2	0	
FS=10	4	0	
FS=11	0	2	
FS=12	0	0	
FS=13	0	0	
FS=14	0	0	
FS=15	0	0	
FS=16	0	0	
FS=17	0	0	
FS=18	0	0	
FS=19	0	0	
FS=20	0	0	
FS>20	0	2	
sum	20	4	


In the plot, both family sizes of the ab and ba strands were used.
Whereas the total numbers indicate only the single count of the tags per region.
Region	total nr. of tags per region
ACH_TDII_5regions_90_633	10
ACH_TDII_5regions_659_1140	2