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comparison macros.xml @ 0:e2e9fae080ad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ebi_tools commit 7a9c88c1c80b80aaa63e55e9d9125b6a4dd695ac
author iuc
date Thu, 01 Dec 2016 15:27:59 -0500
parents
children d4e7e110dfdb
comparison
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-1:000000000000 0:e2e9fae080ad
1 <macros>
2 <xml name="requirements">
3 <requirements>
4 <requirement type="package" version="3.1.1">xmltramp2</requirement>
5 <requirement type="package" version="1.12">urllib3</requirement>
6 <yield/>
7 </requirements>
8 </xml>
9 <xml name="inputs">
10 <conditional name="searched_domain">
11 <param name="domain" type="select" label="Domain to query" >
12 <option value="sra-analysis">Analysis</option>
13 <option value="arrayexpress-repository">ArrayExpress</option>
14 <option value="genome_assembly">Assembly</option>
15 <option value="wgs_masters">Assembly contig set</option>
16 <option value="emblrelease_con">Assembly scaffold (Release)</option>
17 <option value="emblnew_con">Assembly scaffold (Update)</option>
18 <option value="atlas-genes">Baseline Expression Atlas Genes</option>
19 <option value="biomodels">BioModels</option>
20 <option value="biosamples">BioSamples</option>
21 <option value="biosamples-groups">BioSamples groups</option>
22 <option value="chebi">ChEBI</option>
23 <option value="chembl-activity">ChEMBL Activity</option>
24 <option value="chembl-assay">ChEMBL Assay</option>
25 <option value="chembl-document">ChEMBL Document</option>
26 <option value="chembl-molecule">ChEMBL Molecule</option>
27 <option value="chembl-target">ChEMBL Target</option>
28 <option value="chembl-target_component">ChEMBL Target Component</option>
29 <option value="coding_release">Coding (Release)</option>
30 <option value="coding_update">Coding (Update)</option>
31 <option value="dgva">DGVa</option>
32 <option value="atlas-genes-differential">Differential Expression Atlas Genes</option>
33 <option value="efo">EFO</option>
34 <option value="ega">EGA</option>
35 <option value="emdb">EMDB</option>
36 <option value="epo">EPO</option>
37 <option value="elixir-registry">Elixir registry</option>
38 <option value="ensembl_gene">Ensembl Gene</option>
39 <option value="ensemblGenomes_gene">Ensembl Genomes Gene</option>
40 <option value="ensemblGenomes_genome">Ensembl Genomes Genome</option>
41 <option value="ensemblGenomes_seqRegion">Ensembl Genomes Sequence Region</option>
42 <option value="ensemblGenomes_variant">Ensembl Genomes Variant</option>
43 <option value="enzymeportal">Enzyme Portal</option>
44 <option value="enzymeportal_enzymes">Enzyme Portal - Enzymes</option>
45 <option value="atlas-experiments">Expression Atlas Experiments</option>
46 <option value="gnps">GNPS</option>
47 <option value="go">GO</option>
48 <option value="gpcrdb">GPCRDB</option>
49 <option value="gpmdb">GPMdb</option>
50 <option value="hgnc">HGNC</option>
51 <option value="human_diseases">Human diseases</option>
52 <option value="imgt-hla">IMGT/HLA</option>
53 <option value="ipd-kir">IPD-KIR</option>
54 <option value="ipd-mhc">IPD-MHC</option>
55 <option value="intact-complexes">IntAct Complexes</option>
56 <option value="intact-experiments">IntAct Experiments</option>
57 <option value="intact-interactions">IntAct Interactions</option>
58 <option value="intact-interactors">IntAct Interactors</option>
59 <option value="intenz">IntEnz</option>
60 <option value="interpro">InterPro</option>
61 <option value="iprmatches">Iprmatches</option>
62 <option value="jpo">JPO</option>
63 <option value="kipo">KIPO</option>
64 <option value="lrg">LRG</option>
65 <option value="large-assembly">Large assembly</option>
66 <option value="pdbechem">Ligands</option>
67 <option value="medline">MEDLINE</option>
68 <option value="merops_clan">MEROPS Peptidase Clans</option>
69 <option value="merops_family">MEROPS Peptidase Families</option>
70 <option value="merops_id">MEROPS Peptidases</option>
71 <option value="mesh">MESH</option>
72 <option value="massive">MassIVE</option>
73 <option value="metabolights">MetaboLights</option>
74 <option value="metabolights_dataset">MetaboLights Dataset</option>
75 <option value="metabolome_express">MetabolomeExpress</option>
76 <option value="metabolomics_workbench">Metabolomics Workbench</option>
77 <option value="hmmer_hmm">Metadata for HMMER HMM database</option>
78 <option value="hmmer_seq">Metadata for HMMER sequence database</option>
79 <option value="metagenomics_projects">Metagenomics Projects</option>
80 <option value="metagenomics_runs">Metagenomics Runs</option>
81 <option value="metagenomics_samples">Metagenomics Samples</option>
82 <option value="nrnl1">NRNL1</option>
83 <option value="nrnl2">NRNL2</option>
84 <option value="nrpl1">NRPL1</option>
85 <option value="nrpl2">NRPL2</option>
86 <option value="non-coding_release">Non-coding (Release)</option>
87 <option value="non-coding_update">Non-coding (Update)</option>
88 <option value="omim">OMIM</option>
89 <option value="pdbe">PDBe</option>
90 <option value="pride">PRIDE</option>
91 <option value="patentFamilies">Patent Families</option>
92 <option value="patentdb">Patents</option>
93 <option value="ebiweb_people">People</option>
94 <option value="peptide_atlas">PeptideAtlas</option>
95 <option value="pfam">Pfam</option>
96 <option value="pombase">PomBase</option>
97 <option value="rnacentral">RNAcentral</option>
98 <option value="reactome">Reactome</option>
99 <option value="sra-experiment">Read (Experiment)</option>
100 <option value="sra-run">Read (Run)</option>
101 <option value="ebiweb_resources">Resources</option>
102 <option value="rhea">Rhea</option>
103 <option value="sbo">SBO</option>
104 <option value="sra-sample">Sample</option>
105 <option value="emblrelease_standard">Sequence (Release)</option>
106 <option value="emblnew_standard">Sequence (Update)</option>
107 <option value="ebiweb_corporate">Site</option>
108 <option value="project">Study</option>
109 <option value="sra-study">Study (Read/Analysis)</option>
110 <option value="sra-submission">Submission (Read/Analysis)</option>
111 <option value="taxonomy">Taxonomy</option>
112 <option value="tsa_masters">Transcriptome assembly contig set</option>
113 <option value="treefam">TreeFam</option>
114 <option value="uspto">USPTO</option>
115 <option value="uniparc">UniParc</option>
116 <option value="uniprot">UniProtKB</option>
117 <option value="uniref100">UniRef100</option>
118 <option value="uniref50">UniRef50</option>
119 <option value="uniref90">UniRef90</option>
120 <option value="wormbaseParasite">WormBase ParaSite</option>
121 </param>
122
123 <when value="sra-analysis">
124 <param name="fields" type="select" label="Fields to extract" multiple="true">
125 <option value="PROJECT" selected="true">PROJECT</option>
126 <option value="PUBMED" selected="true">PUBMED</option>
127 <option value="SRA-STUDY" selected="true">SRA-STUDY</option>
128 <option value="SRA-SUBMISSION" selected="true">SRA-SUBMISSION</option>
129 <option value="description" selected="true">description</option>
130 <option value="domain_source" selected="true">domain_source</option>
131 <option value="id" selected="true">id</option>
132 <validator type="no_options" message="Please select at least one field" />
133 </param>
134 <repeat name="queries" title="Add a query">
135 <param name="combination_operation" type="select" label="Combination operation" >
136 <option value="AND">AND</option>
137 <option value="OR">OR</option>
138 <option value="NOT">NOT</option>
139 </param>
140 <param name="query_field" type="select" label="Fields" >
141 <option value="PROJECT">PROJECT</option>
142 <option value="PUBMED">PUBMED</option>
143 <option value="SRA-STUDY">SRA-STUDY</option>
144 <option value="SRA-SUBMISSION">SRA-SUBMISSION</option>
145 <option value="abstract">abstract</option>
146 <option value="acc">acc</option>
147 <option value="alias">alias</option>
148 <option value="center_name">center_name</option>
149 <option value="description">description</option>
150 <option value="domain_source">domain_source</option>
151 <option value="id">id</option>
152 </param>
153 <conditional name="comp_operation">
154 <param name="operation" type="select" label="Comparison operation" >
155 <option value="equal">equal</option>
156 <option value="not">not</option>
157 <option value="range">range</option>
158 </param>
159 <when value="equal">
160 <param name="query_text" type="text" label="Searched term"/>
161 </when>
162 <when value="not">
163 <param name="query_text" type="text" label="Searched term"/>
164 <param name="not_query_text" type="text" label="Limiting term"/>
165 </when>
166 <when value="range">
167 <param name="min" type="text" label="From"/>
168 <param name="max" type="text" label="To"/>
169 </when>
170 </conditional>
171 </repeat>
172 </when>
173
174 <when value="arrayexpress-repository">
175 <param name="fields" type="select" label="Fields to extract" multiple="true">
176 <option value="PUBMED" selected="true">PUBMED</option>
177 <option value="TAXONOMY" selected="true">TAXONOMY</option>
178 <option value="data_protocol" selected="true">data_protocol</option>
179 <option value="description" selected="true">description</option>
180 <option value="disease" selected="true">disease</option>
181 <option value="domain_source" selected="true">domain_source</option>
182 <option value="full_dataset_link" selected="true">full_dataset_link</option>
183 <option value="id" selected="true">id</option>
184 <option value="instrument_platform" selected="true">instrument_platform</option>
185 <option value="name" selected="true">name</option>
186 <option value="omics_type" selected="true">omics_type</option>
187 <option value="publication_date" selected="true">publication_date</option>
188 <option value="sample_protocol" selected="true">sample_protocol</option>
189 <option value="species" selected="true">species</option>
190 <option value="submission_date" selected="true">submission_date</option>
191 <option value="submitter_keywords" selected="true">submitter_keywords</option>
192 <option value="tissue" selected="true">tissue</option>
193 <validator type="no_options" message="Please select at least one field" />
194 </param>
195 <repeat name="queries" title="Add a query">
196 <param name="combination_operation" type="select" label="Combination operation" >
197 <option value="AND">AND</option>
198 <option value="OR">OR</option>
199 <option value="NOT">NOT</option>
200 </param>
201 <param name="query_field" type="select" label="Fields" >
202 <option value="PUBMED">PUBMED</option>
203 <option value="TAXONOMY">TAXONOMY</option>
204 <option value="acc">acc</option>
205 <option value="cell_type">cell_type</option>
206 <option value="data_protocol">data_protocol</option>
207 <option value="data_synonyms">data_synonyms</option>
208 <option value="description">description</option>
209 <option value="description_synonyms">description_synonyms</option>
210 <option value="disease">disease</option>
211 <option value="domain_source">domain_source</option>
212 <option value="full_dataset_link">full_dataset_link</option>
213 <option value="id">id</option>
214 <option value="instrument_platform">instrument_platform</option>
215 <option value="name">name</option>
216 <option value="name_synonyms">name_synonyms</option>
217 <option value="omics_type">omics_type</option>
218 <option value="publication_date">publication_date</option>
219 <option value="pubmed_abstract">pubmed_abstract</option>
220 <option value="pubmed_abstract_synonyms">pubmed_abstract_synonyms</option>
221 <option value="pubmed_authors">pubmed_authors</option>
222 <option value="pubmed_title">pubmed_title</option>
223 <option value="pubmed_title_synonyms">pubmed_title_synonyms</option>
224 <option value="repository">repository</option>
225 <option value="sample_protocol">sample_protocol</option>
226 <option value="sample_synonyms">sample_synonyms</option>
227 <option value="software">software</option>
228 <option value="species">species</option>
229 <option value="submission_date">submission_date</option>
230 <option value="submitter">submitter</option>
231 <option value="submitter_email">submitter_email</option>
232 <option value="submitter_keywords">submitter_keywords</option>
233 <option value="tissue">tissue</option>
234 <option value="updated_date">updated_date</option>
235 </param>
236 <conditional name="comp_operation">
237 <param name="operation" type="select" label="Comparison operation" >
238 <option value="equal">equal</option>
239 <option value="not">not</option>
240 <option value="range">range</option>
241 </param>
242 <when value="equal">
243 <param name="query_text" type="text" label="Searched term"/>
244 </when>
245 <when value="not">
246 <param name="query_text" type="text" label="Searched term"/>
247 <param name="not_query_text" type="text" label="Limiting term"/>
248 </when>
249 <when value="range">
250 <param name="min" type="text" label="From"/>
251 <param name="max" type="text" label="To"/>
252 </when>
253 </conditional>
254 </repeat>
255 </when>
256
257 <when value="genome_assembly">
258 <param name="fields" type="select" label="Fields to extract" multiple="true">
259 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
260 <option value="PROJECT" selected="true">PROJECT</option>
261 <option value="SAMPLE" selected="true">SAMPLE</option>
262 <option value="TAXON" selected="true">TAXON</option>
263 <option value="description" selected="true">description</option>
264 <option value="domain_source" selected="true">domain_source</option>
265 <option value="id" selected="true">id</option>
266 <option value="name" selected="true">name</option>
267 <validator type="no_options" message="Please select at least one field" />
268 </param>
269 <repeat name="queries" title="Add a query">
270 <param name="combination_operation" type="select" label="Combination operation" >
271 <option value="AND">AND</option>
272 <option value="OR">OR</option>
273 <option value="NOT">NOT</option>
274 </param>
275 <param name="query_field" type="select" label="Fields" >
276 <option value="BIOSAMPLE">BIOSAMPLE</option>
277 <option value="PROJECT">PROJECT</option>
278 <option value="SAMPLE">SAMPLE</option>
279 <option value="TAXON">TAXON</option>
280 <option value="common_name">common_name</option>
281 <option value="description">description</option>
282 <option value="domain_source">domain_source</option>
283 <option value="id">id</option>
284 <option value="id_noversion">id_noversion</option>
285 <option value="name">name</option>
286 <option value="project_description">project_description</option>
287 <option value="scientific_name">scientific_name</option>
288 <option value="set_chain">set_chain</option>
289 <option value="strain">strain</option>
290 </param>
291 <conditional name="comp_operation">
292 <param name="operation" type="select" label="Comparison operation" >
293 <option value="equal">equal</option>
294 <option value="not">not</option>
295 <option value="range">range</option>
296 </param>
297 <when value="equal">
298 <param name="query_text" type="text" label="Searched term"/>
299 </when>
300 <when value="not">
301 <param name="query_text" type="text" label="Searched term"/>
302 <param name="not_query_text" type="text" label="Limiting term"/>
303 </when>
304 <when value="range">
305 <param name="min" type="text" label="From"/>
306 <param name="max" type="text" label="To"/>
307 </when>
308 </conditional>
309 </repeat>
310 </when>
311
312 <when value="wgs_masters">
313 <param name="fields" type="select" label="Fields to extract" multiple="true">
314 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
315 <option value="PROJECT" selected="true">PROJECT</option>
316 <option value="PUBMED" selected="true">PUBMED</option>
317 <option value="SAMPLE" selected="true">SAMPLE</option>
318 <option value="TAXON" selected="true">TAXON</option>
319 <option value="acc" selected="true">acc</option>
320 <option value="description" selected="true">description</option>
321 <option value="domain_source" selected="true">domain_source</option>
322 <option value="id" selected="true">id</option>
323 <validator type="no_options" message="Please select at least one field" />
324 </param>
325 <repeat name="queries" title="Add a query">
326 <param name="combination_operation" type="select" label="Combination operation" >
327 <option value="AND">AND</option>
328 <option value="OR">OR</option>
329 <option value="NOT">NOT</option>
330 </param>
331 <param name="query_field" type="select" label="Fields" >
332 <option value="BIOSAMPLE">BIOSAMPLE</option>
333 <option value="PROJECT">PROJECT</option>
334 <option value="PUBMED">PUBMED</option>
335 <option value="SAMPLE">SAMPLE</option>
336 <option value="TAXON">TAXON</option>
337 <option value="acc">acc</option>
338 <option value="bio_material">bio_material</option>
339 <option value="common_name">common_name</option>
340 <option value="creation_date">creation_date</option>
341 <option value="culture_collection">culture_collection</option>
342 <option value="description">description</option>
343 <option value="division">division</option>
344 <option value="domain_source">domain_source</option>
345 <option value="host">host</option>
346 <option value="id">id</option>
347 <option value="isolate">isolate</option>
348 <option value="isolation_source">isolation_source</option>
349 <option value="keywords">keywords</option>
350 <option value="last_modification_date">last_modification_date</option>
351 <option value="molecule_type">molecule_type</option>
352 <option value="prefix">prefix</option>
353 <option value="scientific_name">scientific_name</option>
354 <option value="specimen_voucher">specimen_voucher</option>
355 <option value="strain">strain</option>
356 </param>
357 <conditional name="comp_operation">
358 <param name="operation" type="select" label="Comparison operation" >
359 <option value="equal">equal</option>
360 <option value="not">not</option>
361 <option value="range">range</option>
362 </param>
363 <when value="equal">
364 <param name="query_text" type="text" label="Searched term"/>
365 </when>
366 <when value="not">
367 <param name="query_text" type="text" label="Searched term"/>
368 <param name="not_query_text" type="text" label="Limiting term"/>
369 </when>
370 <when value="range">
371 <param name="min" type="text" label="From"/>
372 <param name="max" type="text" label="To"/>
373 </when>
374 </conditional>
375 </repeat>
376 </when>
377
378 <when value="emblrelease_con">
379 <param name="fields" type="select" label="Fields to extract" multiple="true">
380 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
381 <option value="CABRI" selected="true">CABRI</option>
382 <option value="DOI" selected="true">DOI</option>
383 <option value="EC" selected="true">EC</option>
384 <option value="EMBLCDS" selected="true">EMBLCDS</option>
385 <option value="ENA" selected="true">ENA</option>
386 <option value="ENA-CON" selected="true">ENA-CON</option>
387 <option value="ENSEMBL-GN" selected="true">ENSEMBL-GN</option>
388 <option value="ENSEMBLGENOMES-GN" selected="true">ENSEMBLGENOMES-GN</option>
389 <option value="EUROPEPMC" selected="true">EUROPEPMC</option>
390 <option value="FLYBASE" selected="true">FLYBASE</option>
391 <option value="GOA" selected="true">GOA</option>
392 <option value="GRAINGENES" selected="true">GRAINGENES</option>
393 <option value="HGNC" selected="true">HGNC</option>
394 <option value="INTERPRO" selected="true">INTERPRO</option>
395 <option value="MGI" selected="true">MGI</option>
396 <option value="PDB" selected="true">PDB</option>
397 <option value="PUBMED" selected="true">PUBMED</option>
398 <option value="STRAININFO" selected="true">STRAININFO</option>
399 <option value="TAXON" selected="true">TAXON</option>
400 <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
401 <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
402 <option value="VECTORBASE" selected="true">VECTORBASE</option>
403 <option value="WORMBASE" selected="true">WORMBASE</option>
404 <option value="ZFIN" selected="true">ZFIN</option>
405 <option value="acc" selected="true">acc</option>
406 <option value="description" selected="true">description</option>
407 <option value="domain_source" selected="true">domain_source</option>
408 <option value="id" selected="true">id</option>
409 <validator type="no_options" message="Please select at least one field" />
410 </param>
411 <repeat name="queries" title="Add a query">
412 <param name="combination_operation" type="select" label="Combination operation" >
413 <option value="AND">AND</option>
414 <option value="OR">OR</option>
415 <option value="NOT">NOT</option>
416 </param>
417 <param name="query_field" type="select" label="Fields" >
418 <option value="BIOSAMPLE">BIOSAMPLE</option>
419 <option value="CABRI">CABRI</option>
420 <option value="DOI">DOI</option>
421 <option value="EC">EC</option>
422 <option value="EMBLCDS">EMBLCDS</option>
423 <option value="EMBLCDS_version">EMBLCDS_version</option>
424 <option value="ENA">ENA</option>
425 <option value="ENA-CON">ENA-CON</option>
426 <option value="ENSEMBL-GN">ENSEMBL-GN</option>
427 <option value="ENSEMBL-SCAFFOLDS">ENSEMBL-SCAFFOLDS</option>
428 <option value="ENSEMBL-TR">ENSEMBL-TR</option>
429 <option value="ENSEMBLGENOMES-GN">ENSEMBLGENOMES-GN</option>
430 <option value="ENSEMBLGENOMES-TR">ENSEMBLGENOMES-TR</option>
431 <option value="EUROPEPMC">EUROPEPMC</option>
432 <option value="FLYBASE">FLYBASE</option>
433 <option value="GOA">GOA</option>
434 <option value="GRAINGENES">GRAINGENES</option>
435 <option value="HGNC">HGNC</option>
436 <option value="INTERPRO">INTERPRO</option>
437 <option value="MD5">MD5</option>
438 <option value="MGI">MGI</option>
439 <option value="PDB">PDB</option>
440 <option value="PROJECT">PROJECT</option>
441 <option value="PSEUDO">PSEUDO</option>
442 <option value="PUBMED">PUBMED</option>
443 <option value="STRAININFO">STRAININFO</option>
444 <option value="TAXON">TAXON</option>
445 <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
446 <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
447 <option value="VECTORBASE">VECTORBASE</option>
448 <option value="WORMBASE">WORMBASE</option>
449 <option value="ZFIN">ZFIN</option>
450 <option value="acc">acc</option>
451 <option value="bio_material">bio_material</option>
452 <option value="creation_date">creation_date</option>
453 <option value="culture_collection">culture_collection</option>
454 <option value="data_class">data_class</option>
455 <option value="description">description</option>
456 <option value="division">division</option>
457 <option value="domain_source">domain_source</option>
458 <option value="gene">gene</option>
459 <option value="gene_synonym">gene_synonym</option>
460 <option value="id">id</option>
461 <option value="keywords">keywords</option>
462 <option value="last_modification_date">last_modification_date</option>
463 <option value="length">length</option>
464 <option value="locus_tag">locus_tag</option>
465 <option value="molecule_type">molecule_type</option>
466 <option value="old_locus_tag">old_locus_tag</option>
467 <option value="organelle">organelle</option>
468 <option value="organism">organism</option>
469 <option value="organism_classification">organism_classification</option>
470 <option value="organism_species">organism_species</option>
471 <option value="product">product</option>
472 <option value="references">references</option>
473 <option value="sequence_version">sequence_version</option>
474 <option value="specimen_voucher">specimen_voucher</option>
475 <option value="topology">topology</option>
476 </param>
477 <conditional name="comp_operation">
478 <param name="operation" type="select" label="Comparison operation" >
479 <option value="equal">equal</option>
480 <option value="not">not</option>
481 <option value="range">range</option>
482 </param>
483 <when value="equal">
484 <param name="query_text" type="text" label="Searched term"/>
485 </when>
486 <when value="not">
487 <param name="query_text" type="text" label="Searched term"/>
488 <param name="not_query_text" type="text" label="Limiting term"/>
489 </when>
490 <when value="range">
491 <param name="min" type="text" label="From"/>
492 <param name="max" type="text" label="To"/>
493 </when>
494 </conditional>
495 </repeat>
496 </when>
497
498 <when value="emblnew_con">
499 <param name="fields" type="select" label="Fields to extract" multiple="true">
500 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
501 <option value="DOI" selected="true">DOI</option>
502 <option value="EC" selected="true">EC</option>
503 <option value="EMBLCDS" selected="true">EMBLCDS</option>
504 <option value="ENA" selected="true">ENA</option>
505 <option value="ENA-CON" selected="true">ENA-CON</option>
506 <option value="ENSEMBL-GN" selected="true">ENSEMBL-GN</option>
507 <option value="ENSEMBLGENOMES-GN" selected="true">ENSEMBLGENOMES-GN</option>
508 <option value="EUROPEPMC" selected="true">EUROPEPMC</option>
509 <option value="GOA" selected="true">GOA</option>
510 <option value="INTERPRO" selected="true">INTERPRO</option>
511 <option value="PDB" selected="true">PDB</option>
512 <option value="PUBMED" selected="true">PUBMED</option>
513 <option value="TAXON" selected="true">TAXON</option>
514 <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
515 <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
516 <option value="WORMBASE" selected="true">WORMBASE</option>
517 <option value="acc" selected="true">acc</option>
518 <option value="description" selected="true">description</option>
519 <option value="domain_source" selected="true">domain_source</option>
520 <option value="id" selected="true">id</option>
521 <validator type="no_options" message="Please select at least one field" />
522 </param>
523 <repeat name="queries" title="Add a query">
524 <param name="combination_operation" type="select" label="Combination operation" >
525 <option value="AND">AND</option>
526 <option value="OR">OR</option>
527 <option value="NOT">NOT</option>
528 </param>
529 <param name="query_field" type="select" label="Fields" >
530 <option value="BIOSAMPLE">BIOSAMPLE</option>
531 <option value="DOI">DOI</option>
532 <option value="EC">EC</option>
533 <option value="EMBLCDS">EMBLCDS</option>
534 <option value="EMBLCDS_version">EMBLCDS_version</option>
535 <option value="ENA">ENA</option>
536 <option value="ENA-CON">ENA-CON</option>
537 <option value="ENSEMBL-GN">ENSEMBL-GN</option>
538 <option value="ENSEMBL-SCAFFOLDS">ENSEMBL-SCAFFOLDS</option>
539 <option value="ENSEMBL-TR">ENSEMBL-TR</option>
540 <option value="ENSEMBLGENOMES-GN">ENSEMBLGENOMES-GN</option>
541 <option value="ENSEMBLGENOMES-TR">ENSEMBLGENOMES-TR</option>
542 <option value="EUROPEPMC">EUROPEPMC</option>
543 <option value="GOA">GOA</option>
544 <option value="INTERPRO">INTERPRO</option>
545 <option value="MD5">MD5</option>
546 <option value="PDB">PDB</option>
547 <option value="PROJECT">PROJECT</option>
548 <option value="PSEUDO">PSEUDO</option>
549 <option value="PUBMED">PUBMED</option>
550 <option value="TAXON">TAXON</option>
551 <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
552 <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
553 <option value="WORMBASE">WORMBASE</option>
554 <option value="acc">acc</option>
555 <option value="bio_material">bio_material</option>
556 <option value="creation_date">creation_date</option>
557 <option value="culture_collection">culture_collection</option>
558 <option value="data_class">data_class</option>
559 <option value="description">description</option>
560 <option value="division">division</option>
561 <option value="domain_source">domain_source</option>
562 <option value="gene">gene</option>
563 <option value="id">id</option>
564 <option value="keywords">keywords</option>
565 <option value="last_modification_date">last_modification_date</option>
566 <option value="length">length</option>
567 <option value="locus_tag">locus_tag</option>
568 <option value="molecule_type">molecule_type</option>
569 <option value="organelle">organelle</option>
570 <option value="organism">organism</option>
571 <option value="organism_classification">organism_classification</option>
572 <option value="organism_species">organism_species</option>
573 <option value="product">product</option>
574 <option value="references">references</option>
575 <option value="sequence_version">sequence_version</option>
576 <option value="topology">topology</option>
577 </param>
578 <conditional name="comp_operation">
579 <param name="operation" type="select" label="Comparison operation" >
580 <option value="equal">equal</option>
581 <option value="not">not</option>
582 <option value="range">range</option>
583 </param>
584 <when value="equal">
585 <param name="query_text" type="text" label="Searched term"/>
586 </when>
587 <when value="not">
588 <param name="query_text" type="text" label="Searched term"/>
589 <param name="not_query_text" type="text" label="Limiting term"/>
590 </when>
591 <when value="range">
592 <param name="min" type="text" label="From"/>
593 <param name="max" type="text" label="To"/>
594 </when>
595 </conditional>
596 </repeat>
597 </when>
598
599 <when value="atlas-genes">
600 <param name="fields" type="select" label="Fields to extract" multiple="true">
601 <option value="ATLAS" selected="true">ATLAS</option>
602 <option value="EMBL" selected="true">EMBL</option>
603 <option value="ENSFAMILY" selected="true">ENSFAMILY</option>
604 <option value="ENSPROTEIN" selected="true">ENSPROTEIN</option>
605 <option value="ENTREZGENE" selected="true">ENTREZGENE</option>
606 <option value="GO" selected="true">GO</option>
607 <option value="INTERPRO" selected="true">INTERPRO</option>
608 <option value="REFSEQ" selected="true">REFSEQ</option>
609 <option value="TAXONOMY" selected="true">TAXONOMY</option>
610 <option value="UNIGENE" selected="true">UNIGENE</option>
611 <option value="UNIPROT" selected="true">UNIPROT</option>
612 <option value="description" selected="true">description</option>
613 <option value="domain_source" selected="true">domain_source</option>
614 <option value="id" selected="true">id</option>
615 <option value="name" selected="true">name</option>
616 <option value="organism_part" selected="true">organism_part</option>
617 <validator type="no_options" message="Please select at least one field" />
618 </param>
619 <repeat name="queries" title="Add a query">
620 <param name="combination_operation" type="select" label="Combination operation" >
621 <option value="AND">AND</option>
622 <option value="OR">OR</option>
623 <option value="NOT">NOT</option>
624 </param>
625 <param name="query_field" type="select" label="Fields" >
626 <option value="ATLAS">ATLAS</option>
627 <option value="EMBL">EMBL</option>
628 <option value="ENSFAMILY">ENSFAMILY</option>
629 <option value="ENSPROTEIN">ENSPROTEIN</option>
630 <option value="ENSTRANSCRIPT">ENSTRANSCRIPT</option>
631 <option value="ENTREZGENE">ENTREZGENE</option>
632 <option value="GO">GO</option>
633 <option value="INTERPRO">INTERPRO</option>
634 <option value="REFSEQ">REFSEQ</option>
635 <option value="TAXONOMY">TAXONOMY</option>
636 <option value="UNIGENE">UNIGENE</option>
637 <option value="UNIPROT">UNIPROT</option>
638 <option value="age">age</option>
639 <option value="breed">breed</option>
640 <option value="cell_line">cell_line</option>
641 <option value="cell_type">cell_type</option>
642 <option value="cellular_component">cellular_component</option>
643 <option value="cultivar">cultivar</option>
644 <option value="description">description</option>
645 <option value="developmental_stage">developmental_stage</option>
646 <option value="disease">disease</option>
647 <option value="domain_source">domain_source</option>
648 <option value="ecotype">ecotype</option>
649 <option value="ensfamily_description">ensfamily_description</option>
650 <option value="gene_biotype">gene_biotype</option>
651 <option value="goterm">goterm</option>
652 <option value="hgnc_symbol">hgnc_symbol</option>
653 <option value="id">id</option>
654 <option value="id_noversion">id_noversion</option>
655 <option value="individual">individual</option>
656 <option value="interproterm">interproterm</option>
657 <option value="mirbase_accession">mirbase_accession</option>
658 <option value="mirbase_id">mirbase_id</option>
659 <option value="name">name</option>
660 <option value="organism_part">organism_part</option>
661 <option value="ortholog">ortholog</option>
662 <option value="phenotype">phenotype</option>
663 <option value="rna">rna</option>
664 <option value="sampling_time_point">sampling_time_point</option>
665 <option value="sex">sex</option>
666 <option value="somite_stage">somite_stage</option>
667 <option value="strain">strain</option>
668 <option value="synonym">synonym</option>
669 </param>
670 <conditional name="comp_operation">
671 <param name="operation" type="select" label="Comparison operation" >
672 <option value="equal">equal</option>
673 <option value="not">not</option>
674 <option value="range">range</option>
675 </param>
676 <when value="equal">
677 <param name="query_text" type="text" label="Searched term"/>
678 </when>
679 <when value="not">
680 <param name="query_text" type="text" label="Searched term"/>
681 <param name="not_query_text" type="text" label="Limiting term"/>
682 </when>
683 <when value="range">
684 <param name="min" type="text" label="From"/>
685 <param name="max" type="text" label="To"/>
686 </when>
687 </conditional>
688 </repeat>
689 </when>
690
691 <when value="biomodels">
692 <param name="fields" type="select" label="Fields to extract" multiple="true">
693 <option value="3DMET" selected="true">3DMET</option>
694 <option value="BIND" selected="true">BIND</option>
695 <option value="BIOMODELSDATABASE" selected="true">BIOMODELSDATABASE</option>
696 <option value="BRENDA" selected="true">BRENDA</option>
697 <option value="BRENDATISSUEONTOLOGY" selected="true">BRENDATISSUEONTOLOGY</option>
698 <option value="CAS" selected="true">CAS</option>
699 <option value="CELLCYCLEONTOLOGY" selected="true">CELLCYCLEONTOLOGY</option>
700 <option value="CELLTYPEONTOLOGY" selected="true">CELLTYPEONTOLOGY</option>
701 <option value="CHEBI" selected="true">CHEBI</option>
702 <option value="CHEMBLCOMPOUND" selected="true">CHEMBLCOMPOUND</option>
703 <option value="DOI" selected="true">DOI</option>
704 <option value="ENSEMBL" selected="true">ENSEMBL</option>
705 <option value="ENZYMENOMENCLATURE" selected="true">ENZYMENOMENCLATURE</option>
706 <option value="EVIDENCECODEONTOLOGY" selected="true">EVIDENCECODEONTOLOGY</option>
707 <option value="EXPERIMENTALFACTORONTOLOGY" selected="true">EXPERIMENTALFACTORONTOLOGY</option>
708 <option value="FMA" selected="true">FMA</option>
709 <option value="GENEONTOLOGY" selected="true">GENEONTOLOGY</option>
710 <option value="HGNCSYMBOL" selected="true">HGNCSYMBOL</option>
711 <option value="HUMANDISEASEONTOLOGY" selected="true">HUMANDISEASEONTOLOGY</option>
712 <option value="ICD" selected="true">ICD</option>
713 <option value="INTACT" selected="true">INTACT</option>
714 <option value="INTERPRO" selected="true">INTERPRO</option>
715 <option value="ISBN" selected="true">ISBN</option>
716 <option value="KEGGCOMPOUND" selected="true">KEGGCOMPOUND</option>
717 <option value="KEGGDRUG" selected="true">KEGGDRUG</option>
718 <option value="KEGGGENES" selected="true">KEGGGENES</option>
719 <option value="KEGGGENOME" selected="true">KEGGGENOME</option>
720 <option value="KEGGORTHOLOGY" selected="true">KEGGORTHOLOGY</option>
721 <option value="KEGGPATHWAY" selected="true">KEGGPATHWAY</option>
722 <option value="KEGGREACTION" selected="true">KEGGREACTION</option>
723 <option value="LIPIDMAPS" selected="true">LIPIDMAPS</option>
724 <option value="MATHEMATICALMODELLINGONTOLOGY" selected="true">MATHEMATICALMODELLINGONTOLOGY</option>
725 <option value="MIRBASESEQUENCE" selected="true">MIRBASESEQUENCE</option>
726 <option value="MOLECULARINTERACTIONSONTOLOGY" selected="true">MOLECULARINTERACTIONSONTOLOGY</option>
727 <option value="NARCIS" selected="true">NARCIS</option>
728 <option value="NCBIGENE" selected="true">NCBIGENE</option>
729 <option value="NCBIPROTEIN" selected="true">NCBIPROTEIN</option>
730 <option value="NUCLEOTIDESEQUENCEDATABASE" selected="true">NUCLEOTIDESEQUENCEDATABASE</option>
731 <option value="OMIM" selected="true">OMIM</option>
732 <option value="ONTOLOGYOFPHYSICSFORBIOLOGY" selected="true">ONTOLOGYOFPHYSICSFORBIOLOGY</option>
733 <option value="PANTHERPATHWAY" selected="true">PANTHERPATHWAY</option>
734 <option value="PATHWAYONTOLOGY" selected="true">PATHWAYONTOLOGY</option>
735 <option value="PATO" selected="true">PATO</option>
736 <option value="PIRSF" selected="true">PIRSF</option>
737 <option value="PROTEINMODIFICATIONONTOLOGY" selected="true">PROTEINMODIFICATIONONTOLOGY</option>
738 <option value="PROTEINONTOLOGY" selected="true">PROTEINONTOLOGY</option>
739 <option value="PUBCHEM-COMPOUND" selected="true">PUBCHEM-COMPOUND</option>
740 <option value="PUBCHEM-SUBSTANCE" selected="true">PUBCHEM-SUBSTANCE</option>
741 <option value="PUBMED" selected="true">PUBMED</option>
742 <option value="REACTOME" selected="true">REACTOME</option>
743 <option value="SEQUENCEONTOLOGY" selected="true">SEQUENCEONTOLOGY</option>
744 <option value="SGD" selected="true">SGD</option>
745 <option value="SUBTIWIKI" selected="true">SUBTIWIKI</option>
746 <option value="SYSTEMSBIOLOGYONTOLOGY" selected="true">SYSTEMSBIOLOGYONTOLOGY</option>
747 <option value="TAXONOMY" selected="true">TAXONOMY</option>
748 <option value="TRANSPORTCLASSIFICATIONDATABASE" selected="true">TRANSPORTCLASSIFICATIONDATABASE</option>
749 <option value="UNIPROT" selected="true">UNIPROT</option>
750 <option value="UNIPROTISOFORM" selected="true">UNIPROTISOFORM</option>
751 <option value="URL" selected="true">URL</option>
752 <option value="description" selected="true">description</option>
753 <option value="domain_source" selected="true">domain_source</option>
754 <option value="id" selected="true">id</option>
755 <option value="name" selected="true">name</option>
756 <validator type="no_options" message="Please select at least one field" />
757 </param>
758 <repeat name="queries" title="Add a query">
759 <param name="combination_operation" type="select" label="Combination operation" >
760 <option value="AND">AND</option>
761 <option value="OR">OR</option>
762 <option value="NOT">NOT</option>
763 </param>
764 <param name="query_field" type="select" label="Fields" >
765 <option value="3DMET">3DMET</option>
766 <option value="BIND">BIND</option>
767 <option value="BIOMODELSDATABASE">BIOMODELSDATABASE</option>
768 <option value="BRENDA">BRENDA</option>
769 <option value="BRENDATISSUEONTOLOGY">BRENDATISSUEONTOLOGY</option>
770 <option value="CAS">CAS</option>
771 <option value="CELLCYCLEONTOLOGY">CELLCYCLEONTOLOGY</option>
772 <option value="CELLTYPEONTOLOGY">CELLTYPEONTOLOGY</option>
773 <option value="CHEBI">CHEBI</option>
774 <option value="CHEMBLCOMPOUND">CHEMBLCOMPOUND</option>
775 <option value="DOI">DOI</option>
776 <option value="ENSEMBL">ENSEMBL</option>
777 <option value="ENZYMENOMENCLATURE">ENZYMENOMENCLATURE</option>
778 <option value="EVIDENCECODEONTOLOGY">EVIDENCECODEONTOLOGY</option>
779 <option value="EXPERIMENTALFACTORONTOLOGY">EXPERIMENTALFACTORONTOLOGY</option>
780 <option value="FMA">FMA</option>
781 <option value="GENEONTOLOGY">GENEONTOLOGY</option>
782 <option value="HGNCSYMBOL">HGNCSYMBOL</option>
783 <option value="HUMANDISEASEONTOLOGY">HUMANDISEASEONTOLOGY</option>
784 <option value="ICD">ICD</option>
785 <option value="INTACT">INTACT</option>
786 <option value="INTERPRO">INTERPRO</option>
787 <option value="ISBN">ISBN</option>
788 <option value="KEGGCOMPOUND">KEGGCOMPOUND</option>
789 <option value="KEGGDRUG">KEGGDRUG</option>
790 <option value="KEGGGENES">KEGGGENES</option>
791 <option value="KEGGGENOME">KEGGGENOME</option>
792 <option value="KEGGORTHOLOGY">KEGGORTHOLOGY</option>
793 <option value="KEGGPATHWAY">KEGGPATHWAY</option>
794 <option value="KEGGREACTION">KEGGREACTION</option>
795 <option value="LIPIDMAPS">LIPIDMAPS</option>
796 <option value="MATHEMATICALMODELLINGONTOLOGY">MATHEMATICALMODELLINGONTOLOGY</option>
797 <option value="MIRBASESEQUENCE">MIRBASESEQUENCE</option>
798 <option value="MOLECULARINTERACTIONSONTOLOGY">MOLECULARINTERACTIONSONTOLOGY</option>
799 <option value="NARCIS">NARCIS</option>
800 <option value="NCBIGENE">NCBIGENE</option>
801 <option value="NCBIPROTEIN">NCBIPROTEIN</option>
802 <option value="NUCLEOTIDESEQUENCEDATABASE">NUCLEOTIDESEQUENCEDATABASE</option>
803 <option value="OMIM">OMIM</option>
804 <option value="ONTOLOGYOFPHYSICSFORBIOLOGY">ONTOLOGYOFPHYSICSFORBIOLOGY</option>
805 <option value="PANTHERPATHWAY">PANTHERPATHWAY</option>
806 <option value="PATHWAYONTOLOGY">PATHWAYONTOLOGY</option>
807 <option value="PATO">PATO</option>
808 <option value="PIRSF">PIRSF</option>
809 <option value="PROTEINMODIFICATIONONTOLOGY">PROTEINMODIFICATIONONTOLOGY</option>
810 <option value="PROTEINONTOLOGY">PROTEINONTOLOGY</option>
811 <option value="PUBCHEM-COMPOUND">PUBCHEM-COMPOUND</option>
812 <option value="PUBCHEM-SUBSTANCE">PUBCHEM-SUBSTANCE</option>
813 <option value="PUBMED">PUBMED</option>
814 <option value="REACTOME">REACTOME</option>
815 <option value="SEQUENCEONTOLOGY">SEQUENCEONTOLOGY</option>
816 <option value="SGD">SGD</option>
817 <option value="SUBTIWIKI">SUBTIWIKI</option>
818 <option value="SYSTEMSBIOLOGYONTOLOGY">SYSTEMSBIOLOGYONTOLOGY</option>
819 <option value="TAXONOMY">TAXONOMY</option>
820 <option value="TRANSPORTCLASSIFICATIONDATABASE">TRANSPORTCLASSIFICATIONDATABASE</option>
821 <option value="UNIPROT">UNIPROT</option>
822 <option value="UNIPROTISOFORM">UNIPROTISOFORM</option>
823 <option value="URL">URL</option>
824 <option value="acc">acc</option>
825 <option value="author">author</option>
826 <option value="brenda_name">brenda_name</option>
827 <option value="cco_name">cco_name</option>
828 <option value="chebi_name">chebi_name</option>
829 <option value="cl_name">cl_name</option>
830 <option value="creation_date">creation_date</option>
831 <option value="curated">curated</option>
832 <option value="description">description</option>
833 <option value="doid_name">doid_name</option>
834 <option value="domain_source">domain_source</option>
835 <option value="eco_name">eco_name</option>
836 <option value="efo_name">efo_name</option>
837 <option value="fma_name">fma_name</option>
838 <option value="go_name">go_name</option>
839 <option value="id">id</option>
840 <option value="kegg_compound_name">kegg_compound_name</option>
841 <option value="kegg_genes_name">kegg_genes_name</option>
842 <option value="kegg_genome_definition">kegg_genome_definition</option>
843 <option value="kegg_orthology_name">kegg_orthology_name</option>
844 <option value="kegg_pathway_name">kegg_pathway_name</option>
845 <option value="kegg_reaction_name">kegg_reaction_name</option>
846 <option value="keywords">keywords</option>
847 <option value="last_modification_date">last_modification_date</option>
848 <option value="mi_name">mi_name</option>
849 <option value="mod_name">mod_name</option>
850 <option value="name">name</option>
851 <option value="omim_name">omim_name</option>
852 <option value="original_model">original_model</option>
853 <option value="other_name">other_name</option>
854 <option value="pato_name">pato_name</option>
855 <option value="pro_name">pro_name</option>
856 <option value="publication_title">publication_title</option>
857 <option value="pw_name">pw_name</option>
858 <option value="sbo_name">sbo_name</option>
859 <option value="so_name">so_name</option>
860 <option value="species">species</option>
861 <option value="uniprot_name">uniprot_name</option>
862 </param>
863 <conditional name="comp_operation">
864 <param name="operation" type="select" label="Comparison operation" >
865 <option value="equal">equal</option>
866 <option value="not">not</option>
867 <option value="range">range</option>
868 </param>
869 <when value="equal">
870 <param name="query_text" type="text" label="Searched term"/>
871 </when>
872 <when value="not">
873 <param name="query_text" type="text" label="Searched term"/>
874 <param name="not_query_text" type="text" label="Limiting term"/>
875 </when>
876 <when value="range">
877 <param name="min" type="text" label="From"/>
878 <param name="max" type="text" label="To"/>
879 </when>
880 </conditional>
881 </repeat>
882 </when>
883
884 <when value="biosamples">
885 <param name="fields" type="select" label="Fields to extract" multiple="true">
886 <option value="description" selected="true">description</option>
887 <option value="domain_source" selected="true">domain_source</option>
888 <option value="id" selected="true">id</option>
889 <option value="name" selected="true">name</option>
890 <validator type="no_options" message="Please select at least one field" />
891 </param>
892 <repeat name="queries" title="Add a query">
893 <param name="combination_operation" type="select" label="Combination operation" >
894 <option value="AND">AND</option>
895 <option value="OR">OR</option>
896 <option value="NOT">NOT</option>
897 </param>
898 <param name="query_field" type="select" label="Fields" >
899 <option value="acc">acc</option>
900 <option value="description">description</option>
901 <option value="domain_source">domain_source</option>
902 <option value="id">id</option>
903 <option value="name">name</option>
904 <option value="searchwords">searchwords</option>
905 </param>
906 <conditional name="comp_operation">
907 <param name="operation" type="select" label="Comparison operation" >
908 <option value="equal">equal</option>
909 <option value="not">not</option>
910 <option value="range">range</option>
911 </param>
912 <when value="equal">
913 <param name="query_text" type="text" label="Searched term"/>
914 </when>
915 <when value="not">
916 <param name="query_text" type="text" label="Searched term"/>
917 <param name="not_query_text" type="text" label="Limiting term"/>
918 </when>
919 <when value="range">
920 <param name="min" type="text" label="From"/>
921 <param name="max" type="text" label="To"/>
922 </when>
923 </conditional>
924 </repeat>
925 </when>
926
927 <when value="biosamples-groups">
928 <param name="fields" type="select" label="Fields to extract" multiple="true">
929 <option value="description" selected="true">description</option>
930 <option value="domain_source" selected="true">domain_source</option>
931 <option value="id" selected="true">id</option>
932 <option value="name" selected="true">name</option>
933 <validator type="no_options" message="Please select at least one field" />
934 </param>
935 <repeat name="queries" title="Add a query">
936 <param name="combination_operation" type="select" label="Combination operation" >
937 <option value="AND">AND</option>
938 <option value="OR">OR</option>
939 <option value="NOT">NOT</option>
940 </param>
941 <param name="query_field" type="select" label="Fields" >
942 <option value="acc">acc</option>
943 <option value="description">description</option>
944 <option value="domain_source">domain_source</option>
945 <option value="id">id</option>
946 <option value="name">name</option>
947 <option value="searchwords">searchwords</option>
948 </param>
949 <conditional name="comp_operation">
950 <param name="operation" type="select" label="Comparison operation" >
951 <option value="equal">equal</option>
952 <option value="not">not</option>
953 <option value="range">range</option>
954 </param>
955 <when value="equal">
956 <param name="query_text" type="text" label="Searched term"/>
957 </when>
958 <when value="not">
959 <param name="query_text" type="text" label="Searched term"/>
960 <param name="not_query_text" type="text" label="Limiting term"/>
961 </when>
962 <when value="range">
963 <param name="min" type="text" label="From"/>
964 <param name="max" type="text" label="To"/>
965 </when>
966 </conditional>
967 </repeat>
968 </when>
969
970 <when value="chebi">
971 <param name="fields" type="select" label="Fields to extract" multiple="true">
972 <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option>
973 <option value="ARRAYEXPRESSATLAS" selected="true">ARRAYEXPRESSATLAS</option>
974 <option value="BIOMODELS" selected="true">BIOMODELS</option>
975 <option value="BRENDA" selected="true">BRENDA</option>
976 <option value="CAS_REGISTRY_NUMBER" selected="true">CAS_REGISTRY_NUMBER</option>
977 <option value="CHEMBL" selected="true">CHEMBL</option>
978 <option value="CHEMIDPLUS" selected="true">CHEMIDPLUS</option>
979 <option value="CHEMSPIDER" selected="true">CHEMSPIDER</option>
980 <option value="CHINESE_ABSTRACTS_CITATION" selected="true">CHINESE_ABSTRACTS_CITATION</option>
981 <option value="CITEXPLORE_CITATION" selected="true">CITEXPLORE_CITATION</option>
982 <option value="COME" selected="true">COME</option>
983 <option value="COMPTOX" selected="true">COMPTOX</option>
984 <option value="DRUGBANK" selected="true">DRUGBANK</option>
985 <option value="ECMDB" selected="true">ECMDB</option>
986 <option value="ENZYMEPORTAL" selected="true">ENZYMEPORTAL</option>
987 <option value="GOLM" selected="true">GOLM</option>
988 <option value="HMDB" selected="true">HMDB</option>
989 <option value="IEDB" selected="true">IEDB</option>
990 <option value="INTACT" selected="true">INTACT</option>
991 <option value="INTENZ" selected="true">INTENZ</option>
992 <option value="KEGG_COMPOUND" selected="true">KEGG_COMPOUND</option>
993 <option value="KEGG_DRUG" selected="true">KEGG_DRUG</option>
994 <option value="KEGG_GLYCAN" selected="true">KEGG_GLYCAN</option>
995 <option value="KNAPSACK" selected="true">KNAPSACK</option>
996 <option value="LINCS" selected="true">LINCS</option>
997 <option value="LIPID_MAPS_CLASS" selected="true">LIPID_MAPS_CLASS</option>
998 <option value="LIPID_MAPS_INSTANCE" selected="true">LIPID_MAPS_INSTANCE</option>
999 <option value="MASSBANK" selected="true">MASSBANK</option>
1000 <option value="METACYC" selected="true">METACYC</option>
1001 <option value="MOLBASE" selected="true">MOLBASE</option>
1002 <option value="NMRSHIFTDB" selected="true">NMRSHIFTDB</option>
1003 <option value="NURSA" selected="true">NURSA</option>
1004 <option value="PATENT" selected="true">PATENT</option>
1005 <option value="PDB" selected="true">PDB</option>
1006 <option value="PDBECHEM" selected="true">PDBECHEM</option>
1007 <option value="PESTICIDES" selected="true">PESTICIDES</option>
1008 <option value="PUBCHEM" selected="true">PUBCHEM</option>
1009 <option value="PUBMED_CITATION" selected="true">PUBMED_CITATION</option>
1010 <option value="REACTOME" selected="true">REACTOME</option>
1011 <option value="REAXYS_REGISTRY_NUMBER" selected="true">REAXYS_REGISTRY_NUMBER</option>
1012 <option value="RESID" selected="true">RESID</option>
1013 <option value="RHEA" selected="true">RHEA</option>
1014 <option value="SABIO-RK" selected="true">SABIO-RK</option>
1015 <option value="UM-BBD_COMPID" selected="true">UM-BBD_COMPID</option>
1016 <option value="UNIPROT" selected="true">UNIPROT</option>
1017 <option value="WEBELEMENTS" selected="true">WEBELEMENTS</option>
1018 <option value="WIKIPEDIA" selected="true">WIKIPEDIA</option>
1019 <option value="YMDB" selected="true">YMDB</option>
1020 <option value="description" selected="true">description</option>
1021 <option value="domain_source" selected="true">domain_source</option>
1022 <option value="id" selected="true">id</option>
1023 <option value="inchi" selected="true">inchi</option>
1024 <option value="inchikey" selected="true">inchikey</option>
1025 <option value="iupac_name" selected="true">iupac_name</option>
1026 <option value="name" selected="true">name</option>
1027 <option value="smiles" selected="true">smiles</option>
1028 <validator type="no_options" message="Please select at least one field" />
1029 </param>
1030 <repeat name="queries" title="Add a query">
1031 <param name="combination_operation" type="select" label="Combination operation" >
1032 <option value="AND">AND</option>
1033 <option value="OR">OR</option>
1034 <option value="NOT">NOT</option>
1035 </param>
1036 <param name="query_field" type="select" label="Fields" >
1037 <option value="AGRICOLA_CITATION">AGRICOLA_CITATION</option>
1038 <option value="ARRAYEXPRESS">ARRAYEXPRESS</option>
1039 <option value="ARRAYEXPRESSATLAS">ARRAYEXPRESSATLAS</option>
1040 <option value="BEILSTEIN_REGISTRY_NUMBER">BEILSTEIN_REGISTRY_NUMBER</option>
1041 <option value="BIOMODELS">BIOMODELS</option>
1042 <option value="BRENDA">BRENDA</option>
1043 <option value="CAS_REGISTRY_NUMBER">CAS_REGISTRY_NUMBER</option>
1044 <option value="CHEMBL">CHEMBL</option>
1045 <option value="CHEMIDPLUS">CHEMIDPLUS</option>
1046 <option value="CHEMSPIDER">CHEMSPIDER</option>
1047 <option value="CHINESE_ABSTRACTS_CITATION">CHINESE_ABSTRACTS_CITATION</option>
1048 <option value="CITEXPLORE_CITATION">CITEXPLORE_CITATION</option>
1049 <option value="COME">COME</option>
1050 <option value="COMPTOX">COMPTOX</option>
1051 <option value="DRUGBANK">DRUGBANK</option>
1052 <option value="ECMDB">ECMDB</option>
1053 <option value="ENZYMEPORTAL">ENZYMEPORTAL</option>
1054 <option value="ETH">ETH</option>
1055 <option value="GMELIN_REGISTRY_NUMBER">GMELIN_REGISTRY_NUMBER</option>
1056 <option value="GOLM">GOLM</option>
1057 <option value="HMDB">HMDB</option>
1058 <option value="IEDB">IEDB</option>
1059 <option value="INTACT">INTACT</option>
1060 <option value="INTENZ">INTENZ</option>
1061 <option value="KEGG_COMPOUND">KEGG_COMPOUND</option>
1062 <option value="KEGG_DRUG">KEGG_DRUG</option>
1063 <option value="KEGG_GLYCAN">KEGG_GLYCAN</option>
1064 <option value="KNAPSACK">KNAPSACK</option>
1065 <option value="LINCS">LINCS</option>
1066 <option value="LIPID_MAPS_CLASS">LIPID_MAPS_CLASS</option>
1067 <option value="LIPID_MAPS_INSTANCE">LIPID_MAPS_INSTANCE</option>
1068 <option value="MASSBANK">MASSBANK</option>
1069 <option value="METACYC">METACYC</option>
1070 <option value="MOLBASE">MOLBASE</option>
1071 <option value="NMRSHIFTDB">NMRSHIFTDB</option>
1072 <option value="NURSA">NURSA</option>
1073 <option value="PATENT">PATENT</option>
1074 <option value="PDB">PDB</option>
1075 <option value="PDBECHEM">PDBECHEM</option>
1076 <option value="PESTICIDES">PESTICIDES</option>
1077 <option value="PUBCHEM">PUBCHEM</option>
1078 <option value="PUBMED_CENTRAL_CITATION">PUBMED_CENTRAL_CITATION</option>
1079 <option value="PUBMED_CITATION">PUBMED_CITATION</option>
1080 <option value="REACTOME">REACTOME</option>
1081 <option value="REAXYS_REGISTRY_NUMBER">REAXYS_REGISTRY_NUMBER</option>
1082 <option value="RESID">RESID</option>
1083 <option value="RHEA">RHEA</option>
1084 <option value="SABIO-RK">SABIO-RK</option>
1085 <option value="SMID">SMID</option>
1086 <option value="UM-BBD_COMPID">UM-BBD_COMPID</option>
1087 <option value="UNIPROT">UNIPROT</option>
1088 <option value="WEBELEMENTS">WEBELEMENTS</option>
1089 <option value="WIKIPEDIA">WIKIPEDIA</option>
1090 <option value="YMDB">YMDB</option>
1091 <option value="acc">acc</option>
1092 <option value="charge">charge</option>
1093 <option value="description">description</option>
1094 <option value="domain_source">domain_source</option>
1095 <option value="formula">formula</option>
1096 <option value="has_functional_parent">has_functional_parent</option>
1097 <option value="has_parent_hydride">has_parent_hydride</option>
1098 <option value="has_part">has_part</option>
1099 <option value="has_role">has_role</option>
1100 <option value="id">id</option>
1101 <option value="inchi">inchi</option>
1102 <option value="inchikey">inchikey</option>
1103 <option value="is_a">is_a</option>
1104 <option value="is_conjugate_acid_of">is_conjugate_acid_of</option>
1105 <option value="is_conjugate_base_of">is_conjugate_base_of</option>
1106 <option value="is_enantiomer_of">is_enantiomer_of</option>
1107 <option value="is_substituent_group_from">is_substituent_group_from</option>
1108 <option value="is_tautomer_of">is_tautomer_of</option>
1109 <option value="iupac_name">iupac_name</option>
1110 <option value="mass">mass</option>
1111 <option value="name">name</option>
1112 <option value="secondary_accession_number">secondary_accession_number</option>
1113 <option value="smiles">smiles</option>
1114 <option value="synonym">synonym</option>
1115 </param>
1116 <conditional name="comp_operation">
1117 <param name="operation" type="select" label="Comparison operation" >
1118 <option value="equal">equal</option>
1119 <option value="not">not</option>
1120 <option value="range">range</option>
1121 </param>
1122 <when value="equal">
1123 <param name="query_text" type="text" label="Searched term"/>
1124 </when>
1125 <when value="not">
1126 <param name="query_text" type="text" label="Searched term"/>
1127 <param name="not_query_text" type="text" label="Limiting term"/>
1128 </when>
1129 <when value="range">
1130 <param name="min" type="text" label="From"/>
1131 <param name="max" type="text" label="To"/>
1132 </when>
1133 </conditional>
1134 </repeat>
1135 </when>
1136
1137 <when value="chembl-activity">
1138 <param name="fields" type="select" label="Fields to extract" multiple="true">
1139 <option value="CHEMBL-ASSAY" selected="true">CHEMBL-ASSAY</option>
1140 <option value="CHEMBL-DOCUMENT" selected="true">CHEMBL-DOCUMENT</option>
1141 <option value="CHEMBL-MOLECULE" selected="true">CHEMBL-MOLECULE</option>
1142 <option value="domain_source" selected="true">domain_source</option>
1143 <option value="id" selected="true">id</option>
1144 <option value="standard_type" selected="true">standard_type</option>
1145 <option value="standard_value" selected="true">standard_value</option>
1146 <validator type="no_options" message="Please select at least one field" />
1147 </param>
1148 <repeat name="queries" title="Add a query">
1149 <param name="combination_operation" type="select" label="Combination operation" >
1150 <option value="AND">AND</option>
1151 <option value="OR">OR</option>
1152 <option value="NOT">NOT</option>
1153 </param>
1154 <param name="query_field" type="select" label="Fields" >
1155 <option value="CHEMBL-ASSAY">CHEMBL-ASSAY</option>
1156 <option value="CHEMBL-DOCUMENT">CHEMBL-DOCUMENT</option>
1157 <option value="CHEMBL-MOLECULE">CHEMBL-MOLECULE</option>
1158 <option value="activity_comment">activity_comment</option>
1159 <option value="domain_source">domain_source</option>
1160 <option value="id">id</option>
1161 <option value="pchembl_value">pchembl_value</option>
1162 <option value="published_relation">published_relation</option>
1163 <option value="published_type">published_type</option>
1164 <option value="published_units">published_units</option>
1165 <option value="published_value">published_value</option>
1166 <option value="standard_relation">standard_relation</option>
1167 <option value="standard_type">standard_type</option>
1168 <option value="standard_units">standard_units</option>
1169 <option value="standard_value">standard_value</option>
1170 </param>
1171 <conditional name="comp_operation">
1172 <param name="operation" type="select" label="Comparison operation" >
1173 <option value="equal">equal</option>
1174 <option value="not">not</option>
1175 <option value="range">range</option>
1176 </param>
1177 <when value="equal">
1178 <param name="query_text" type="text" label="Searched term"/>
1179 </when>
1180 <when value="not">
1181 <param name="query_text" type="text" label="Searched term"/>
1182 <param name="not_query_text" type="text" label="Limiting term"/>
1183 </when>
1184 <when value="range">
1185 <param name="min" type="text" label="From"/>
1186 <param name="max" type="text" label="To"/>
1187 </when>
1188 </conditional>
1189 </repeat>
1190 </when>
1191
1192 <when value="chembl-assay">
1193 <param name="fields" type="select" label="Fields to extract" multiple="true">
1194 <option value="CHEMBL-ACTIVITY" selected="true">CHEMBL-ACTIVITY</option>
1195 <option value="CHEMBL-DOCUMENT" selected="true">CHEMBL-DOCUMENT</option>
1196 <option value="CHEMBL-TARGET" selected="true">CHEMBL-TARGET</option>
1197 <option value="assay_type" selected="true">assay_type</option>
1198 <option value="description" selected="true">description</option>
1199 <option value="domain_source" selected="true">domain_source</option>
1200 <option value="id" selected="true">id</option>
1201 <validator type="no_options" message="Please select at least one field" />
1202 </param>
1203 <repeat name="queries" title="Add a query">
1204 <param name="combination_operation" type="select" label="Combination operation" >
1205 <option value="AND">AND</option>
1206 <option value="OR">OR</option>
1207 <option value="NOT">NOT</option>
1208 </param>
1209 <param name="query_field" type="select" label="Fields" >
1210 <option value="CHEMBL-ACTIVITY">CHEMBL-ACTIVITY</option>
1211 <option value="CHEMBL-DOCUMENT">CHEMBL-DOCUMENT</option>
1212 <option value="CHEMBL-TARGET">CHEMBL-TARGET</option>
1213 <option value="assay_category">assay_category</option>
1214 <option value="assay_source">assay_source</option>
1215 <option value="assay_test_type">assay_test_type</option>
1216 <option value="assay_type">assay_type</option>
1217 <option value="description">description</option>
1218 <option value="domain_source">domain_source</option>
1219 <option value="id">id</option>
1220 <option value="organism">organism</option>
1221 <option value="tax_id">tax_id</option>
1222 </param>
1223 <conditional name="comp_operation">
1224 <param name="operation" type="select" label="Comparison operation" >
1225 <option value="equal">equal</option>
1226 <option value="not">not</option>
1227 <option value="range">range</option>
1228 </param>
1229 <when value="equal">
1230 <param name="query_text" type="text" label="Searched term"/>
1231 </when>
1232 <when value="not">
1233 <param name="query_text" type="text" label="Searched term"/>
1234 <param name="not_query_text" type="text" label="Limiting term"/>
1235 </when>
1236 <when value="range">
1237 <param name="min" type="text" label="From"/>
1238 <param name="max" type="text" label="To"/>
1239 </when>
1240 </conditional>
1241 </repeat>
1242 </when>
1243
1244 <when value="chembl-document">
1245 <param name="fields" type="select" label="Fields to extract" multiple="true">
1246 <option value="PUBMED" selected="true">PUBMED</option>
1247 <option value="domain_source" selected="true">domain_source</option>
1248 <option value="id" selected="true">id</option>
1249 <option value="title" selected="true">title</option>
1250 <validator type="no_options" message="Please select at least one field" />
1251 </param>
1252 <repeat name="queries" title="Add a query">
1253 <param name="combination_operation" type="select" label="Combination operation" >
1254 <option value="AND">AND</option>
1255 <option value="OR">OR</option>
1256 <option value="NOT">NOT</option>
1257 </param>
1258 <param name="query_field" type="select" label="Fields" >
1259 <option value="PUBMED">PUBMED</option>
1260 <option value="doi">doi</option>
1261 <option value="domain_source">domain_source</option>
1262 <option value="id">id</option>
1263 <option value="issue">issue</option>
1264 <option value="journal">journal</option>
1265 <option value="title">title</option>
1266 <option value="volume">volume</option>
1267 <option value="year">year</option>
1268 </param>
1269 <conditional name="comp_operation">
1270 <param name="operation" type="select" label="Comparison operation" >
1271 <option value="equal">equal</option>
1272 <option value="not">not</option>
1273 <option value="range">range</option>
1274 </param>
1275 <when value="equal">
1276 <param name="query_text" type="text" label="Searched term"/>
1277 </when>
1278 <when value="not">
1279 <param name="query_text" type="text" label="Searched term"/>
1280 <param name="not_query_text" type="text" label="Limiting term"/>
1281 </when>
1282 <when value="range">
1283 <param name="min" type="text" label="From"/>
1284 <param name="max" type="text" label="To"/>
1285 </when>
1286 </conditional>
1287 </repeat>
1288 </when>
1289
1290 <when value="chembl-molecule">
1291 <param name="fields" type="select" label="Fields to extract" multiple="true">
1292 <option value="CHEMBL-ACTIVITY" selected="true">CHEMBL-ACTIVITY</option>
1293 <option value="alogp" selected="true">alogp</option>
1294 <option value="canonical_smiles" selected="true">canonical_smiles</option>
1295 <option value="domain_source" selected="true">domain_source</option>
1296 <option value="hydrogen_bond_acceptor_count" selected="true">hydrogen_bond_acceptor_count</option>
1297 <option value="hydrogen_bond_donor_count" selected="true">hydrogen_bond_donor_count</option>
1298 <option value="id" selected="true">id</option>
1299 <option value="molecular_weight" selected="true">molecular_weight</option>
1300 <option value="polar_surface_area" selected="true">polar_surface_area</option>
1301 <validator type="no_options" message="Please select at least one field" />
1302 </param>
1303 <repeat name="queries" title="Add a query">
1304 <param name="combination_operation" type="select" label="Combination operation" >
1305 <option value="AND">AND</option>
1306 <option value="OR">OR</option>
1307 <option value="NOT">NOT</option>
1308 </param>
1309 <param name="query_field" type="select" label="Fields" >
1310 <option value="CHEMBL-ACTIVITY">CHEMBL-ACTIVITY</option>
1311 <option value="alogp">alogp</option>
1312 <option value="canonical_smiles">canonical_smiles</option>
1313 <option value="domain_source">domain_source</option>
1314 <option value="hydrogen_bond_acceptor_count">hydrogen_bond_acceptor_count</option>
1315 <option value="hydrogen_bond_donor_count">hydrogen_bond_donor_count</option>
1316 <option value="id">id</option>
1317 <option value="molecular_species">molecular_species</option>
1318 <option value="molecular_weight">molecular_weight</option>
1319 <option value="molecule_synonym">molecule_synonym</option>
1320 <option value="molecule_type">molecule_type</option>
1321 <option value="molformula">molformula</option>
1322 <option value="polar_surface_area">polar_surface_area</option>
1323 <option value="pref_name">pref_name</option>
1324 <option value="standard_inchi_key">standard_inchi_key</option>
1325 <option value="structure_type">structure_type</option>
1326 </param>
1327 <conditional name="comp_operation">
1328 <param name="operation" type="select" label="Comparison operation" >
1329 <option value="equal">equal</option>
1330 <option value="not">not</option>
1331 <option value="range">range</option>
1332 </param>
1333 <when value="equal">
1334 <param name="query_text" type="text" label="Searched term"/>
1335 </when>
1336 <when value="not">
1337 <param name="query_text" type="text" label="Searched term"/>
1338 <param name="not_query_text" type="text" label="Limiting term"/>
1339 </when>
1340 <when value="range">
1341 <param name="min" type="text" label="From"/>
1342 <param name="max" type="text" label="To"/>
1343 </when>
1344 </conditional>
1345 </repeat>
1346 </when>
1347
1348 <when value="chembl-target">
1349 <param name="fields" type="select" label="Fields to extract" multiple="true">
1350 <option value="CHEMBL-ASSAY" selected="true">CHEMBL-ASSAY</option>
1351 <option value="CHEMBL-TARGETCOMPONENTS" selected="true">CHEMBL-TARGETCOMPONENTS</option>
1352 <option value="domain_source" selected="true">domain_source</option>
1353 <option value="id" selected="true">id</option>
1354 <option value="organism" selected="true">organism</option>
1355 <validator type="no_options" message="Please select at least one field" />
1356 </param>
1357 <repeat name="queries" title="Add a query">
1358 <param name="combination_operation" type="select" label="Combination operation" >
1359 <option value="AND">AND</option>
1360 <option value="OR">OR</option>
1361 <option value="NOT">NOT</option>
1362 </param>
1363 <param name="query_field" type="select" label="Fields" >
1364 <option value="CHEMBL-ASSAY">CHEMBL-ASSAY</option>
1365 <option value="CHEMBL-TARGETCOMPONENTS">CHEMBL-TARGETCOMPONENTS</option>
1366 <option value="domain_source">domain_source</option>
1367 <option value="id">id</option>
1368 <option value="organism">organism</option>
1369 <option value="parent_target_type">parent_target_type</option>
1370 <option value="pref_name">pref_name</option>
1371 <option value="target_type">target_type</option>
1372 <option value="tax_id">tax_id</option>
1373 </param>
1374 <conditional name="comp_operation">
1375 <param name="operation" type="select" label="Comparison operation" >
1376 <option value="equal">equal</option>
1377 <option value="not">not</option>
1378 <option value="range">range</option>
1379 </param>
1380 <when value="equal">
1381 <param name="query_text" type="text" label="Searched term"/>
1382 </when>
1383 <when value="not">
1384 <param name="query_text" type="text" label="Searched term"/>
1385 <param name="not_query_text" type="text" label="Limiting term"/>
1386 </when>
1387 <when value="range">
1388 <param name="min" type="text" label="From"/>
1389 <param name="max" type="text" label="To"/>
1390 </when>
1391 </conditional>
1392 </repeat>
1393 </when>
1394
1395 <when value="chembl-target_component">
1396 <param name="fields" type="select" label="Fields to extract" multiple="true">
1397 <option value="CHEMBL-TARGET" selected="true">CHEMBL-TARGET</option>
1398 <option value="accession" selected="true">accession</option>
1399 <option value="component_synonym" selected="true">component_synonym</option>
1400 <option value="component_type" selected="true">component_type</option>
1401 <option value="description" selected="true">description</option>
1402 <option value="domain_source" selected="true">domain_source</option>
1403 <option value="id" selected="true">id</option>
1404 <validator type="no_options" message="Please select at least one field" />
1405 </param>
1406 <repeat name="queries" title="Add a query">
1407 <param name="combination_operation" type="select" label="Combination operation" >
1408 <option value="AND">AND</option>
1409 <option value="OR">OR</option>
1410 <option value="NOT">NOT</option>
1411 </param>
1412 <param name="query_field" type="select" label="Fields" >
1413 <option value="CHEMBL-TARGET">CHEMBL-TARGET</option>
1414 <option value="accession">accession</option>
1415 <option value="component_synonym">component_synonym</option>
1416 <option value="component_type">component_type</option>
1417 <option value="description">description</option>
1418 <option value="domain_source">domain_source</option>
1419 <option value="id">id</option>
1420 </param>
1421 <conditional name="comp_operation">
1422 <param name="operation" type="select" label="Comparison operation" >
1423 <option value="equal">equal</option>
1424 <option value="not">not</option>
1425 <option value="range">range</option>
1426 </param>
1427 <when value="equal">
1428 <param name="query_text" type="text" label="Searched term"/>
1429 </when>
1430 <when value="not">
1431 <param name="query_text" type="text" label="Searched term"/>
1432 <param name="not_query_text" type="text" label="Limiting term"/>
1433 </when>
1434 <when value="range">
1435 <param name="min" type="text" label="From"/>
1436 <param name="max" type="text" label="To"/>
1437 </when>
1438 </conditional>
1439 </repeat>
1440 </when>
1441
1442 <when value="coding_release">
1443 <param name="fields" type="select" label="Fields to extract" multiple="true">
1444 <option value="AGRICOLA" selected="true">AGRICOLA</option>
1445 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
1446 <option value="DICTYBASE" selected="true">DICTYBASE</option>
1447 <option value="DOI" selected="true">DOI</option>
1448 <option value="EC" selected="true">EC</option>
1449 <option value="EMBL" selected="true">EMBL</option>
1450 <option value="EMBLCDS" selected="true">EMBLCDS</option>
1451 <option value="ENSEMBLGENOMES-GN" selected="true">ENSEMBLGENOMES-GN</option>
1452 <option value="GENEDB" selected="true">GENEDB</option>
1453 <option value="GOA" selected="true">GOA</option>
1454 <option value="H-INVDB" selected="true">H-INVDB</option>
1455 <option value="HGNC" selected="true">HGNC</option>
1456 <option value="INTERPRO" selected="true">INTERPRO</option>
1457 <option value="MGI" selected="true">MGI</option>
1458 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
1459 <option value="PDB" selected="true">PDB</option>
1460 <option value="POMBASE" selected="true">POMBASE</option>
1461 <option value="PROJECT" selected="true">PROJECT</option>
1462 <option value="PUBMED" selected="true">PUBMED</option>
1463 <option value="SGD" selected="true">SGD</option>
1464 <option value="SUBTILIST" selected="true">SUBTILIST</option>
1465 <option value="TAXON" selected="true">TAXON</option>
1466 <option value="UNILIB" selected="true">UNILIB</option>
1467 <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
1468 <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
1469 <option value="VECTORBASE" selected="true">VECTORBASE</option>
1470 <option value="WORMBASE" selected="true">WORMBASE</option>
1471 <option value="ZFIN" selected="true">ZFIN</option>
1472 <option value="description" selected="true">description</option>
1473 <option value="domain_source" selected="true">domain_source</option>
1474 <option value="id" selected="true">id</option>
1475 <validator type="no_options" message="Please select at least one field" />
1476 </param>
1477 <repeat name="queries" title="Add a query">
1478 <param name="combination_operation" type="select" label="Combination operation" >
1479 <option value="AND">AND</option>
1480 <option value="OR">OR</option>
1481 <option value="NOT">NOT</option>
1482 </param>
1483 <param name="query_field" type="select" label="Fields" >
1484 <option value="AGRICOLA">AGRICOLA</option>
1485 <option value="BIOSAMPLE">BIOSAMPLE</option>
1486 <option value="DICTYBASE">DICTYBASE</option>
1487 <option value="DOI">DOI</option>
1488 <option value="EC">EC</option>
1489 <option value="EMBL">EMBL</option>
1490 <option value="EMBLCDS">EMBLCDS</option>
1491 <option value="EMBLCDS_version">EMBLCDS_version</option>
1492 <option value="ENSEMBLGENOMES-GN">ENSEMBLGENOMES-GN</option>
1493 <option value="ENSEMBLGENOMES-TR">ENSEMBLGENOMES-TR</option>
1494 <option value="GENEDB">GENEDB</option>
1495 <option value="GOA">GOA</option>
1496 <option value="H-INVDB">H-INVDB</option>
1497 <option value="HGNC">HGNC</option>
1498 <option value="IMGT_HLA">IMGT_HLA</option>
1499 <option value="INTERPRO">INTERPRO</option>
1500 <option value="MD5">MD5</option>
1501 <option value="MGI">MGI</option>
1502 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
1503 <option value="PDB">PDB</option>
1504 <option value="POMBASE">POMBASE</option>
1505 <option value="PROJECT">PROJECT</option>
1506 <option value="PUBMED">PUBMED</option>
1507 <option value="SGD">SGD</option>
1508 <option value="SUBTILIST">SUBTILIST</option>
1509 <option value="TAXON">TAXON</option>
1510 <option value="UNILIB">UNILIB</option>
1511 <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
1512 <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
1513 <option value="VECTORBASE">VECTORBASE</option>
1514 <option value="WORMBASE">WORMBASE</option>
1515 <option value="ZFIN">ZFIN</option>
1516 <option value="bio_material">bio_material</option>
1517 <option value="creation_date">creation_date</option>
1518 <option value="culture_collection">culture_collection</option>
1519 <option value="data_class">data_class</option>
1520 <option value="description">description</option>
1521 <option value="division">division</option>
1522 <option value="domain_source">domain_source</option>
1523 <option value="gene">gene</option>
1524 <option value="gene_synonym">gene_synonym</option>
1525 <option value="id">id</option>
1526 <option value="keywords">keywords</option>
1527 <option value="last_modification_date">last_modification_date</option>
1528 <option value="length">length</option>
1529 <option value="locus_tag">locus_tag</option>
1530 <option value="molecule_type">molecule_type</option>
1531 <option value="old_locus_tag">old_locus_tag</option>
1532 <option value="organelle">organelle</option>
1533 <option value="organism">organism</option>
1534 <option value="organism_classification">organism_classification</option>
1535 <option value="organism_species">organism_species</option>
1536 <option value="product">product</option>
1537 <option value="references">references</option>
1538 <option value="sequence_version">sequence_version</option>
1539 <option value="specimen_voucher">specimen_voucher</option>
1540 <option value="topology">topology</option>
1541 </param>
1542 <conditional name="comp_operation">
1543 <param name="operation" type="select" label="Comparison operation" >
1544 <option value="equal">equal</option>
1545 <option value="not">not</option>
1546 <option value="range">range</option>
1547 </param>
1548 <when value="equal">
1549 <param name="query_text" type="text" label="Searched term"/>
1550 </when>
1551 <when value="not">
1552 <param name="query_text" type="text" label="Searched term"/>
1553 <param name="not_query_text" type="text" label="Limiting term"/>
1554 </when>
1555 <when value="range">
1556 <param name="min" type="text" label="From"/>
1557 <param name="max" type="text" label="To"/>
1558 </when>
1559 </conditional>
1560 </repeat>
1561 </when>
1562
1563 <when value="coding_update">
1564 <param name="fields" type="select" label="Fields to extract" multiple="true">
1565 <option value="AGRICOLA" selected="true">AGRICOLA</option>
1566 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
1567 <option value="DOI" selected="true">DOI</option>
1568 <option value="EC" selected="true">EC</option>
1569 <option value="EMBL" selected="true">EMBL</option>
1570 <option value="EMBLCDS" selected="true">EMBLCDS</option>
1571 <option value="ENSEMBLGENOMES-GN" selected="true">ENSEMBLGENOMES-GN</option>
1572 <option value="GOA" selected="true">GOA</option>
1573 <option value="H-INVDB" selected="true">H-INVDB</option>
1574 <option value="HGNC" selected="true">HGNC</option>
1575 <option value="INTERPRO" selected="true">INTERPRO</option>
1576 <option value="MGI" selected="true">MGI</option>
1577 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
1578 <option value="PDB" selected="true">PDB</option>
1579 <option value="PROJECT" selected="true">PROJECT</option>
1580 <option value="PUBMED" selected="true">PUBMED</option>
1581 <option value="SGD" selected="true">SGD</option>
1582 <option value="TAXON" selected="true">TAXON</option>
1583 <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
1584 <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
1585 <option value="WORMBASE" selected="true">WORMBASE</option>
1586 <option value="ZFIN" selected="true">ZFIN</option>
1587 <option value="description" selected="true">description</option>
1588 <option value="domain_source" selected="true">domain_source</option>
1589 <option value="id" selected="true">id</option>
1590 <validator type="no_options" message="Please select at least one field" />
1591 </param>
1592 <repeat name="queries" title="Add a query">
1593 <param name="combination_operation" type="select" label="Combination operation" >
1594 <option value="AND">AND</option>
1595 <option value="OR">OR</option>
1596 <option value="NOT">NOT</option>
1597 </param>
1598 <param name="query_field" type="select" label="Fields" >
1599 <option value="AGRICOLA">AGRICOLA</option>
1600 <option value="BIOSAMPLE">BIOSAMPLE</option>
1601 <option value="DOI">DOI</option>
1602 <option value="EC">EC</option>
1603 <option value="EMBL">EMBL</option>
1604 <option value="EMBLCDS">EMBLCDS</option>
1605 <option value="EMBLCDS_version">EMBLCDS_version</option>
1606 <option value="ENSEMBLGENOMES-GN">ENSEMBLGENOMES-GN</option>
1607 <option value="ENSEMBLGENOMES-TR">ENSEMBLGENOMES-TR</option>
1608 <option value="GOA">GOA</option>
1609 <option value="H-INVDB">H-INVDB</option>
1610 <option value="HGNC">HGNC</option>
1611 <option value="IMGT_HLA">IMGT_HLA</option>
1612 <option value="INTERPRO">INTERPRO</option>
1613 <option value="MD5">MD5</option>
1614 <option value="MGI">MGI</option>
1615 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
1616 <option value="PDB">PDB</option>
1617 <option value="PROJECT">PROJECT</option>
1618 <option value="PUBMED">PUBMED</option>
1619 <option value="SGD">SGD</option>
1620 <option value="TAXON">TAXON</option>
1621 <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
1622 <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
1623 <option value="WORMBASE">WORMBASE</option>
1624 <option value="ZFIN">ZFIN</option>
1625 <option value="bio_material">bio_material</option>
1626 <option value="creation_date">creation_date</option>
1627 <option value="culture_collection">culture_collection</option>
1628 <option value="data_class">data_class</option>
1629 <option value="description">description</option>
1630 <option value="division">division</option>
1631 <option value="domain_source">domain_source</option>
1632 <option value="gene">gene</option>
1633 <option value="gene_synonym">gene_synonym</option>
1634 <option value="id">id</option>
1635 <option value="keywords">keywords</option>
1636 <option value="last_modification_date">last_modification_date</option>
1637 <option value="length">length</option>
1638 <option value="locus_tag">locus_tag</option>
1639 <option value="molecule_type">molecule_type</option>
1640 <option value="old_locus_tag">old_locus_tag</option>
1641 <option value="organelle">organelle</option>
1642 <option value="organism">organism</option>
1643 <option value="organism_classification">organism_classification</option>
1644 <option value="organism_species">organism_species</option>
1645 <option value="product">product</option>
1646 <option value="references">references</option>
1647 <option value="sequence_version">sequence_version</option>
1648 <option value="specimen_voucher">specimen_voucher</option>
1649 <option value="topology">topology</option>
1650 </param>
1651 <conditional name="comp_operation">
1652 <param name="operation" type="select" label="Comparison operation" >
1653 <option value="equal">equal</option>
1654 <option value="not">not</option>
1655 <option value="range">range</option>
1656 </param>
1657 <when value="equal">
1658 <param name="query_text" type="text" label="Searched term"/>
1659 </when>
1660 <when value="not">
1661 <param name="query_text" type="text" label="Searched term"/>
1662 <param name="not_query_text" type="text" label="Limiting term"/>
1663 </when>
1664 <when value="range">
1665 <param name="min" type="text" label="From"/>
1666 <param name="max" type="text" label="To"/>
1667 </when>
1668 </conditional>
1669 </repeat>
1670 </when>
1671
1672 <when value="dgva">
1673 <param name="fields" type="select" label="Fields to extract" multiple="true">
1674 <option value="ENSEMBL" selected="true">ENSEMBL</option>
1675 <option value="NCBI_TAXID" selected="true">NCBI_TAXID</option>
1676 <option value="PUBMED" selected="true">PUBMED</option>
1677 <option value="domain_source" selected="true">domain_source</option>
1678 <option value="ftp_link" selected="true">ftp_link</option>
1679 <option value="id" selected="true">id</option>
1680 <option value="species" selected="true">species</option>
1681 <option value="study_accession" selected="true">study_accession</option>
1682 <option value="study_name" selected="true">study_name</option>
1683 <option value="study_title" selected="true">study_title</option>
1684 <option value="variant_count" selected="true">variant_count</option>
1685 <option value="variant_placement" selected="true">variant_placement</option>
1686 <option value="variant_sample" selected="true">variant_sample</option>
1687 <option value="variant_type" selected="true">variant_type</option>
1688 <option value="variation_level" selected="true">variation_level</option>
1689 <validator type="no_options" message="Please select at least one field" />
1690 </param>
1691 <repeat name="queries" title="Add a query">
1692 <param name="combination_operation" type="select" label="Combination operation" >
1693 <option value="AND">AND</option>
1694 <option value="OR">OR</option>
1695 <option value="NOT">NOT</option>
1696 </param>
1697 <param name="query_field" type="select" label="Fields" >
1698 <option value="ENSEMBL">ENSEMBL</option>
1699 <option value="NCBI_TAXID">NCBI_TAXID</option>
1700 <option value="PUBMED">PUBMED</option>
1701 <option value="domain_source">domain_source</option>
1702 <option value="ftp_link">ftp_link</option>
1703 <option value="id">id</option>
1704 <option value="species">species</option>
1705 <option value="study_accession">study_accession</option>
1706 <option value="study_name">study_name</option>
1707 <option value="study_title">study_title</option>
1708 <option value="variant_count">variant_count</option>
1709 <option value="variant_placement">variant_placement</option>
1710 <option value="variant_sample">variant_sample</option>
1711 <option value="variant_type">variant_type</option>
1712 <option value="variation_level">variation_level</option>
1713 </param>
1714 <conditional name="comp_operation">
1715 <param name="operation" type="select" label="Comparison operation" >
1716 <option value="equal">equal</option>
1717 <option value="not">not</option>
1718 <option value="range">range</option>
1719 </param>
1720 <when value="equal">
1721 <param name="query_text" type="text" label="Searched term"/>
1722 </when>
1723 <when value="not">
1724 <param name="query_text" type="text" label="Searched term"/>
1725 <param name="not_query_text" type="text" label="Limiting term"/>
1726 </when>
1727 <when value="range">
1728 <param name="min" type="text" label="From"/>
1729 <param name="max" type="text" label="To"/>
1730 </when>
1731 </conditional>
1732 </repeat>
1733 </when>
1734
1735 <when value="atlas-genes-differential">
1736 <param name="fields" type="select" label="Fields to extract" multiple="true">
1737 <option value="ATLAS" selected="true">ATLAS</option>
1738 <option value="EMBL" selected="true">EMBL</option>
1739 <option value="ENSFAMILY" selected="true">ENSFAMILY</option>
1740 <option value="ENSPROTEIN" selected="true">ENSPROTEIN</option>
1741 <option value="ENTREZGENE" selected="true">ENTREZGENE</option>
1742 <option value="GO" selected="true">GO</option>
1743 <option value="INTERPRO" selected="true">INTERPRO</option>
1744 <option value="REFSEQ" selected="true">REFSEQ</option>
1745 <option value="UNIGENE" selected="true">UNIGENE</option>
1746 <option value="UNIPROT" selected="true">UNIPROT</option>
1747 <option value="description" selected="true">description</option>
1748 <option value="domain_source" selected="true">domain_source</option>
1749 <option value="id" selected="true">id</option>
1750 <option value="name" selected="true">name</option>
1751 <option value="organism_part" selected="true">organism_part</option>
1752 <validator type="no_options" message="Please select at least one field" />
1753 </param>
1754 <repeat name="queries" title="Add a query">
1755 <param name="combination_operation" type="select" label="Combination operation" >
1756 <option value="AND">AND</option>
1757 <option value="OR">OR</option>
1758 <option value="NOT">NOT</option>
1759 </param>
1760 <param name="query_field" type="select" label="Fields" >
1761 <option value="ATLAS">ATLAS</option>
1762 <option value="EMBL">EMBL</option>
1763 <option value="ENSFAMILY">ENSFAMILY</option>
1764 <option value="ENSPROTEIN">ENSPROTEIN</option>
1765 <option value="ENSTRANSCRIPT">ENSTRANSCRIPT</option>
1766 <option value="ENTREZGENE">ENTREZGENE</option>
1767 <option value="GO">GO</option>
1768 <option value="INTERPRO">INTERPRO</option>
1769 <option value="REFSEQ">REFSEQ</option>
1770 <option value="UNIGENE">UNIGENE</option>
1771 <option value="UNIPROT">UNIPROT</option>
1772 <option value="age">age</option>
1773 <option value="biopsy_site">biopsy_site</option>
1774 <option value="biotic_plant_treatment">biotic_plant_treatment</option>
1775 <option value="block">block</option>
1776 <option value="cell_cycle_stage">cell_cycle_stage</option>
1777 <option value="cell_line">cell_line</option>
1778 <option value="cell_type">cell_type</option>
1779 <option value="cellular_component">cellular_component</option>
1780 <option value="chromosomal_aberration">chromosomal_aberration</option>
1781 <option value="clinical_history">clinical_history</option>
1782 <option value="clinical_information">clinical_information</option>
1783 <option value="clinical_treatment">clinical_treatment</option>
1784 <option value="compound">compound</option>
1785 <option value="cultivar">cultivar</option>
1786 <option value="description">description</option>
1787 <option value="developmental_stage">developmental_stage</option>
1788 <option value="diet">diet</option>
1789 <option value="disease">disease</option>
1790 <option value="disease_staging">disease_staging</option>
1791 <option value="disease_state">disease_state</option>
1792 <option value="domain_source">domain_source</option>
1793 <option value="ecotype">ecotype</option>
1794 <option value="ensfamily_description">ensfamily_description</option>
1795 <option value="environmental_history">environmental_history</option>
1796 <option value="environmental_stress">environmental_stress</option>
1797 <option value="estrogen_receptor_status">estrogen_receptor_status</option>
1798 <option value="family_relationship">family_relationship</option>
1799 <option value="fraction">fraction</option>
1800 <option value="gene_biotype">gene_biotype</option>
1801 <option value="generation">generation</option>
1802 <option value="genetic_modification">genetic_modification</option>
1803 <option value="genotype">genotype</option>
1804 <option value="gestational_age">gestational_age</option>
1805 <option value="goterm">goterm</option>
1806 <option value="growth_condition">growth_condition</option>
1807 <option value="hgnc_symbol">hgnc_symbol</option>
1808 <option value="histology">histology</option>
1809 <option value="id">id</option>
1810 <option value="id_noversion">id_noversion</option>
1811 <option value="individual">individual</option>
1812 <option value="infect">infect</option>
1813 <option value="injury">injury</option>
1814 <option value="interproterm">interproterm</option>
1815 <option value="irradiate">irradiate</option>
1816 <option value="light">light</option>
1817 <option value="material_type">material_type</option>
1818 <option value="mirbase_accession">mirbase_accession</option>
1819 <option value="mirbase_id">mirbase_id</option>
1820 <option value="name">name</option>
1821 <option value="organism_part">organism_part</option>
1822 <option value="ortholog">ortholog</option>
1823 <option value="passage">passage</option>
1824 <option value="phenotype">phenotype</option>
1825 <option value="physical_activity">physical_activity</option>
1826 <option value="ploidy">ploidy</option>
1827 <option value="population">population</option>
1828 <option value="pregnancy">pregnancy</option>
1829 <option value="protocol">protocol</option>
1830 <option value="rna">rna</option>
1831 <option value="rna_interference">rna_interference</option>
1832 <option value="rnai">rnai</option>
1833 <option value="sampling_site">sampling_site</option>
1834 <option value="sampling_time">sampling_time</option>
1835 <option value="sampling_time_point">sampling_time_point</option>
1836 <option value="sex">sex</option>
1837 <option value="specimen_with_known_storage_state">specimen_with_known_storage_state</option>
1838 <option value="stimulus">stimulus</option>
1839 <option value="strain">strain</option>
1840 <option value="survival_time">survival_time</option>
1841 <option value="synonym">synonym</option>
1842 <option value="temperature">temperature</option>
1843 <option value="time">time</option>
1844 <option value="treatment">treatment</option>
1845 <option value="tumor_grading">tumor_grading</option>
1846 <option value="tumor_stage">tumor_stage</option>
1847 </param>
1848 <conditional name="comp_operation">
1849 <param name="operation" type="select" label="Comparison operation" >
1850 <option value="equal">equal</option>
1851 <option value="not">not</option>
1852 <option value="range">range</option>
1853 </param>
1854 <when value="equal">
1855 <param name="query_text" type="text" label="Searched term"/>
1856 </when>
1857 <when value="not">
1858 <param name="query_text" type="text" label="Searched term"/>
1859 <param name="not_query_text" type="text" label="Limiting term"/>
1860 </when>
1861 <when value="range">
1862 <param name="min" type="text" label="From"/>
1863 <param name="max" type="text" label="To"/>
1864 </when>
1865 </conditional>
1866 </repeat>
1867 </when>
1868
1869 <when value="efo">
1870 <param name="fields" type="select" label="Fields to extract" multiple="true">
1871 <option value="EFO" selected="true">EFO</option>
1872 <option value="domain_source" selected="true">domain_source</option>
1873 <option value="id" selected="true">id</option>
1874 <option value="name" selected="true">name</option>
1875 <validator type="no_options" message="Please select at least one field" />
1876 </param>
1877 <repeat name="queries" title="Add a query">
1878 <param name="combination_operation" type="select" label="Combination operation" >
1879 <option value="AND">AND</option>
1880 <option value="OR">OR</option>
1881 <option value="NOT">NOT</option>
1882 </param>
1883 <param name="query_field" type="select" label="Fields" >
1884 <option value="EFO">EFO</option>
1885 <option value="domain_source">domain_source</option>
1886 <option value="id">id</option>
1887 <option value="name">name</option>
1888 </param>
1889 <conditional name="comp_operation">
1890 <param name="operation" type="select" label="Comparison operation" >
1891 <option value="equal">equal</option>
1892 <option value="not">not</option>
1893 <option value="range">range</option>
1894 </param>
1895 <when value="equal">
1896 <param name="query_text" type="text" label="Searched term"/>
1897 </when>
1898 <when value="not">
1899 <param name="query_text" type="text" label="Searched term"/>
1900 <param name="not_query_text" type="text" label="Limiting term"/>
1901 </when>
1902 <when value="range">
1903 <param name="min" type="text" label="From"/>
1904 <param name="max" type="text" label="To"/>
1905 </when>
1906 </conditional>
1907 </repeat>
1908 </when>
1909
1910 <when value="ega">
1911 <param name="fields" type="select" label="Fields to extract" multiple="true">
1912 <option value="EGA" selected="true">EGA</option>
1913 <option value="PUBMED" selected="true">PUBMED</option>
1914 <option value="TAXONOMY" selected="true">TAXONOMY</option>
1915 <option value="description" selected="true">description</option>
1916 <option value="domain_source" selected="true">domain_source</option>
1917 <option value="full_dataset_link" selected="true">full_dataset_link</option>
1918 <option value="id" selected="true">id</option>
1919 <option value="name" selected="true">name</option>
1920 <option value="omics_type" selected="true">omics_type</option>
1921 <option value="technology_type" selected="true">technology_type</option>
1922 <validator type="no_options" message="Please select at least one field" />
1923 </param>
1924 <repeat name="queries" title="Add a query">
1925 <param name="combination_operation" type="select" label="Combination operation" >
1926 <option value="AND">AND</option>
1927 <option value="OR">OR</option>
1928 <option value="NOT">NOT</option>
1929 </param>
1930 <param name="query_field" type="select" label="Fields" >
1931 <option value="EGA">EGA</option>
1932 <option value="PUBMED">PUBMED</option>
1933 <option value="TAXONOMY">TAXONOMY</option>
1934 <option value="acc">acc</option>
1935 <option value="acronym">acronym</option>
1936 <option value="category">category</option>
1937 <option value="contact_person">contact_person</option>
1938 <option value="dataset_title">dataset_title</option>
1939 <option value="description">description</option>
1940 <option value="description_synonyms">description_synonyms</option>
1941 <option value="domain_source">domain_source</option>
1942 <option value="email">email</option>
1943 <option value="full_dataset_link">full_dataset_link</option>
1944 <option value="host">host</option>
1945 <option value="host_link">host_link</option>
1946 <option value="id">id</option>
1947 <option value="name">name</option>
1948 <option value="name_synonyms">name_synonyms</option>
1949 <option value="omics_type">omics_type</option>
1950 <option value="output_date">output_date</option>
1951 <option value="pubmed_abstract">pubmed_abstract</option>
1952 <option value="pubmed_abstract_synonyms">pubmed_abstract_synonyms</option>
1953 <option value="pubmed_authors">pubmed_authors</option>
1954 <option value="pubmed_title">pubmed_title</option>
1955 <option value="pubmed_title_synonyms">pubmed_title_synonyms</option>
1956 <option value="repository">repository</option>
1957 <option value="source">source</option>
1958 <option value="study_type">study_type</option>
1959 <option value="technology_type">technology_type</option>
1960 <option value="updated_date">updated_date</option>
1961 <option value="url">url</option>
1962 </param>
1963 <conditional name="comp_operation">
1964 <param name="operation" type="select" label="Comparison operation" >
1965 <option value="equal">equal</option>
1966 <option value="not">not</option>
1967 <option value="range">range</option>
1968 </param>
1969 <when value="equal">
1970 <param name="query_text" type="text" label="Searched term"/>
1971 </when>
1972 <when value="not">
1973 <param name="query_text" type="text" label="Searched term"/>
1974 <param name="not_query_text" type="text" label="Limiting term"/>
1975 </when>
1976 <when value="range">
1977 <param name="min" type="text" label="From"/>
1978 <param name="max" type="text" label="To"/>
1979 </when>
1980 </conditional>
1981 </repeat>
1982 </when>
1983
1984 <when value="emdb">
1985 <param name="fields" type="select" label="Fields to extract" multiple="true">
1986 <option value="DOI" selected="true">DOI</option>
1987 <option value="EMDB" selected="true">EMDB</option>
1988 <option value="GO" selected="true">GO</option>
1989 <option value="INTERPRO" selected="true">INTERPRO</option>
1990 <option value="NCBI" selected="true">NCBI</option>
1991 <option value="PDB" selected="true">PDB</option>
1992 <option value="PUBMED" selected="true">PUBMED</option>
1993 <option value="UNIPROT" selected="true">UNIPROT</option>
1994 <option value="author" selected="true">author</option>
1995 <option value="description" selected="true">description</option>
1996 <option value="domain_source" selected="true">domain_source</option>
1997 <option value="headerReleaseDate_date" selected="true">headerReleaseDate_date</option>
1998 <option value="id" selected="true">id</option>
1999 <option value="mapReleaseDate_date" selected="true">mapReleaseDate_date</option>
2000 <option value="method" selected="true">method</option>
2001 <option value="name" selected="true">name</option>
2002 <option value="obsoletedDate_date" selected="true">obsoletedDate_date</option>
2003 <option value="resolution" selected="true">resolution</option>
2004 <option value="specimenstate" selected="true">specimenstate</option>
2005 <validator type="no_options" message="Please select at least one field" />
2006 </param>
2007 <repeat name="queries" title="Add a query">
2008 <param name="combination_operation" type="select" label="Combination operation" >
2009 <option value="AND">AND</option>
2010 <option value="OR">OR</option>
2011 <option value="NOT">NOT</option>
2012 </param>
2013 <param name="query_field" type="select" label="Fields" >
2014 <option value="DOI">DOI</option>
2015 <option value="EMDB">EMDB</option>
2016 <option value="GO">GO</option>
2017 <option value="INTERPRO">INTERPRO</option>
2018 <option value="NCBI">NCBI</option>
2019 <option value="PDB">PDB</option>
2020 <option value="PUBMED">PUBMED</option>
2021 <option value="UNIPROT">UNIPROT</option>
2022 <option value="articletitle">articletitle</option>
2023 <option value="author">author</option>
2024 <option value="authorspublication">authorspublication</option>
2025 <option value="book">book</option>
2026 <option value="chaptertitle">chaptertitle</option>
2027 <option value="depositionDate_date">depositionDate_date</option>
2028 <option value="description">description</option>
2029 <option value="domain_source">domain_source</option>
2030 <option value="headerReleaseDate_date">headerReleaseDate_date</option>
2031 <option value="id">id</option>
2032 <option value="keywords">keywords</option>
2033 <option value="lastUpdate_date">lastUpdate_date</option>
2034 <option value="mapReleaseDate_date">mapReleaseDate_date</option>
2035 <option value="method">method</option>
2036 <option value="microscope">microscope</option>
2037 <option value="name">name</option>
2038 <option value="obsoletedDate_date">obsoletedDate_date</option>
2039 <option value="resolution">resolution</option>
2040 <option value="sciname">sciname</option>
2041 <option value="scispeciesname">scispeciesname</option>
2042 <option value="specimenstate">specimenstate</option>
2043 <option value="synname">synname</option>
2044 <option value="synspeciesname">synspeciesname</option>
2045 <option value="thesistitle">thesistitle</option>
2046 <option value="vitrificationinstrument">vitrificationinstrument</option>
2047 </param>
2048 <conditional name="comp_operation">
2049 <param name="operation" type="select" label="Comparison operation" >
2050 <option value="equal">equal</option>
2051 <option value="not">not</option>
2052 <option value="range">range</option>
2053 </param>
2054 <when value="equal">
2055 <param name="query_text" type="text" label="Searched term"/>
2056 </when>
2057 <when value="not">
2058 <param name="query_text" type="text" label="Searched term"/>
2059 <param name="not_query_text" type="text" label="Limiting term"/>
2060 </when>
2061 <when value="range">
2062 <param name="min" type="text" label="From"/>
2063 <param name="max" type="text" label="To"/>
2064 </when>
2065 </conditional>
2066 </repeat>
2067 </when>
2068
2069 <when value="epo">
2070 <param name="fields" type="select" label="Fields to extract" multiple="true">
2071 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
2072 <option value="TAXON" selected="true">TAXON</option>
2073 <option value="acc" selected="true">acc</option>
2074 <option value="description" selected="true">description</option>
2075 <option value="doc_file" selected="true">doc_file</option>
2076 <option value="domain_source" selected="true">domain_source</option>
2077 <option value="id" selected="true">id</option>
2078 <option value="offset_end" selected="true">offset_end</option>
2079 <option value="offset_start" selected="true">offset_start</option>
2080 <validator type="no_options" message="Please select at least one field" />
2081 </param>
2082 <repeat name="queries" title="Add a query">
2083 <param name="combination_operation" type="select" label="Combination operation" >
2084 <option value="AND">AND</option>
2085 <option value="OR">OR</option>
2086 <option value="NOT">NOT</option>
2087 </param>
2088 <param name="query_field" type="select" label="Fields" >
2089 <option value="MD5">MD5</option>
2090 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
2091 <option value="TAXON">TAXON</option>
2092 <option value="acc">acc</option>
2093 <option value="creation_date">creation_date</option>
2094 <option value="data_class">data_class</option>
2095 <option value="description">description</option>
2096 <option value="division">division</option>
2097 <option value="domain_source">domain_source</option>
2098 <option value="id">id</option>
2099 <option value="keywords">keywords</option>
2100 <option value="last_modification_date">last_modification_date</option>
2101 <option value="length">length</option>
2102 <option value="molecule_type">molecule_type</option>
2103 <option value="organelle">organelle</option>
2104 <option value="organism">organism</option>
2105 <option value="organism_classification">organism_classification</option>
2106 <option value="organism_species">organism_species</option>
2107 <option value="references">references</option>
2108 <option value="sequence_version">sequence_version</option>
2109 <option value="topology">topology</option>
2110 </param>
2111 <conditional name="comp_operation">
2112 <param name="operation" type="select" label="Comparison operation" >
2113 <option value="equal">equal</option>
2114 <option value="not">not</option>
2115 <option value="range">range</option>
2116 </param>
2117 <when value="equal">
2118 <param name="query_text" type="text" label="Searched term"/>
2119 </when>
2120 <when value="not">
2121 <param name="query_text" type="text" label="Searched term"/>
2122 <param name="not_query_text" type="text" label="Limiting term"/>
2123 </when>
2124 <when value="range">
2125 <param name="min" type="text" label="From"/>
2126 <param name="max" type="text" label="To"/>
2127 </when>
2128 </conditional>
2129 </repeat>
2130 </when>
2131
2132 <when value="elixir-registry">
2133 <param name="fields" type="select" label="Fields to extract" multiple="true">
2134 <option value="PMID" selected="true">PMID</option>
2135 <option value="description" selected="true">description</option>
2136 <option value="domain_source" selected="true">domain_source</option>
2137 <option value="homepage" selected="true">homepage</option>
2138 <option value="id" selected="true">id</option>
2139 <option value="mirror" selected="true">mirror</option>
2140 <option value="name" selected="true">name</option>
2141 <option value="version" selected="true">version</option>
2142 <validator type="no_options" message="Please select at least one field" />
2143 </param>
2144 <repeat name="queries" title="Add a query">
2145 <param name="combination_operation" type="select" label="Combination operation" >
2146 <option value="AND">AND</option>
2147 <option value="OR">OR</option>
2148 <option value="NOT">NOT</option>
2149 </param>
2150 <param name="query_field" type="select" label="Fields" >
2151 <option value="DOI">DOI</option>
2152 <option value="PMID">PMID</option>
2153 <option value="collection">collection</option>
2154 <option value="cost">cost</option>
2155 <option value="description">description</option>
2156 <option value="domain_source">domain_source</option>
2157 <option value="elixir_node">elixir_node</option>
2158 <option value="elixir_status">elixir_status</option>
2159 <option value="function_description">function_description</option>
2160 <option value="function_name">function_name</option>
2161 <option value="id">id</option>
2162 <option value="id_noversion">id_noversion</option>
2163 <option value="input_data_format">input_data_format</option>
2164 <option value="input_data_type">input_data_type</option>
2165 <option value="interface_type">interface_type</option>
2166 <option value="language">language</option>
2167 <option value="license">license</option>
2168 <option value="name">name</option>
2169 <option value="output_data_format">output_data_format</option>
2170 <option value="output_data_type">output_data_type</option>
2171 <option value="platform">platform</option>
2172 <option value="resource_type">resource_type</option>
2173 <option value="topic">topic</option>
2174 <option value="version">version</option>
2175 </param>
2176 <conditional name="comp_operation">
2177 <param name="operation" type="select" label="Comparison operation" >
2178 <option value="equal">equal</option>
2179 <option value="not">not</option>
2180 <option value="range">range</option>
2181 </param>
2182 <when value="equal">
2183 <param name="query_text" type="text" label="Searched term"/>
2184 </when>
2185 <when value="not">
2186 <param name="query_text" type="text" label="Searched term"/>
2187 <param name="not_query_text" type="text" label="Limiting term"/>
2188 </when>
2189 <when value="range">
2190 <param name="min" type="text" label="From"/>
2191 <param name="max" type="text" label="To"/>
2192 </when>
2193 </conditional>
2194 </repeat>
2195 </when>
2196
2197 <when value="ensembl_gene">
2198 <param name="fields" type="select" label="Fields to extract" multiple="true">
2199 <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option>
2200 <option value="BIOGRID" selected="true">BIOGRID</option>
2201 <option value="CCDS" selected="true">CCDS</option>
2202 <option value="CINT_ANISEED_V1" selected="true">CINT_ANISEED_V1</option>
2203 <option value="CINT_JGI_V1" selected="true">CINT_JGI_V1</option>
2204 <option value="DBASS3" selected="true">DBASS3</option>
2205 <option value="DBASS5" selected="true">DBASS5</option>
2206 <option value="EC_NUMBER" selected="true">EC_NUMBER</option>
2207 <option value="EMBL" selected="true">EMBL</option>
2208 <option value="ENSEMBL" selected="true">ENSEMBL</option>
2209 <option value="ENSEMBLGENOMES_ORTHOLOG" selected="true">ENSEMBLGENOMES_ORTHOLOG</option>
2210 <option value="ENSEMBL_ORTHOLOG" selected="true">ENSEMBL_ORTHOLOG</option>
2211 <option value="ENSG" selected="true">ENSG</option>
2212 <option value="ENS_LRG_GENE" selected="true">ENS_LRG_GENE</option>
2213 <option value="ENS_LRG_TRANSCRIPT" selected="true">ENS_LRG_TRANSCRIPT</option>
2214 <option value="ENTREZGENE" selected="true">ENTREZGENE</option>
2215 <option value="EPD" selected="true">EPD</option>
2216 <option value="FLYBASECGID_GENE" selected="true">FLYBASECGID_GENE</option>
2217 <option value="FLYBASECGID_TRANSCRIPT" selected="true">FLYBASECGID_TRANSCRIPT</option>
2218 <option value="FLYBASENAME_GENE" selected="true">FLYBASENAME_GENE</option>
2219 <option value="FLYBASENAME_TRANSCRIPT" selected="true">FLYBASENAME_TRANSCRIPT</option>
2220 <option value="FLYBASENAME_TRANSLATION" selected="true">FLYBASENAME_TRANSLATION</option>
2221 <option value="FLYBASE_ANNOTATION_ID" selected="true">FLYBASE_ANNOTATION_ID</option>
2222 <option value="FLYBASE_GENE_ID" selected="true">FLYBASE_GENE_ID</option>
2223 <option value="FLYBASE_TRANSCRIPT_ID" selected="true">FLYBASE_TRANSCRIPT_ID</option>
2224 <option value="FLYBASE_TRANSLATION_ID" selected="true">FLYBASE_TRANSLATION_ID</option>
2225 <option value="FLYREACTOME" selected="true">FLYREACTOME</option>
2226 <option value="GENEDB" selected="true">GENEDB</option>
2227 <option value="GENOMERNAI" selected="true">GENOMERNAI</option>
2228 <option value="GO" selected="true">GO</option>
2229 <option value="GOSLIM_GOA" selected="true">GOSLIM_GOA</option>
2230 <option value="HGNC" selected="true">HGNC</option>
2231 <option value="HPA" selected="true">HPA</option>
2232 <option value="IMGT_GENE_DB" selected="true">IMGT_GENE_DB</option>
2233 <option value="INTERACTIVEFLY" selected="true">INTERACTIVEFLY</option>
2234 <option value="KEGG_ENZYME" selected="true">KEGG_ENZYME</option>
2235 <option value="LRG" selected="true">LRG</option>
2236 <option value="MEROPS" selected="true">MEROPS</option>
2237 <option value="METACYC" selected="true">METACYC</option>
2238 <option value="MGI" selected="true">MGI</option>
2239 <option value="MIM_GENE" selected="true">MIM_GENE</option>
2240 <option value="MIM_MORBID" selected="true">MIM_MORBID</option>
2241 <option value="MIRBASE" selected="true">MIRBASE</option>
2242 <option value="MITODROME" selected="true">MITODROME</option>
2243 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
2244 <option value="OXFORD_FGU_OA_GENE" selected="true">OXFORD_FGU_OA_GENE</option>
2245 <option value="OXFORD_FGU_OA_TSCRIPT" selected="true">OXFORD_FGU_OA_TSCRIPT</option>
2246 <option value="PDB" selected="true">PDB</option>
2247 <option value="PLATYPUS_OLFACTORY_RECEPTOR" selected="true">PLATYPUS_OLFACTORY_RECEPTOR</option>
2248 <option value="PROTEIN_ID" selected="true">PROTEIN_ID</option>
2249 <option value="PUBMED" selected="true">PUBMED</option>
2250 <option value="REACTOME" selected="true">REACTOME</option>
2251 <option value="REACTOME_GENE" selected="true">REACTOME_GENE</option>
2252 <option value="REACTOME_TRANSCRIPT" selected="true">REACTOME_TRANSCRIPT</option>
2253 <option value="REFSEQ_DNA" selected="true">REFSEQ_DNA</option>
2254 <option value="REFSEQ_DNA_PREDICTED" selected="true">REFSEQ_DNA_PREDICTED</option>
2255 <option value="REFSEQ_MRNA" selected="true">REFSEQ_MRNA</option>
2256 <option value="REFSEQ_MRNA_PREDICTED" selected="true">REFSEQ_MRNA_PREDICTED</option>
2257 <option value="REFSEQ_NCRNA" selected="true">REFSEQ_NCRNA</option>
2258 <option value="REFSEQ_NCRNA_PREDICTED" selected="true">REFSEQ_NCRNA_PREDICTED</option>
2259 <option value="REFSEQ_PEPTIDE" selected="true">REFSEQ_PEPTIDE</option>
2260 <option value="REFSEQ_PEPTIDE_PREDICTED" selected="true">REFSEQ_PEPTIDE_PREDICTED</option>
2261 <option value="REFSEQ_RNA" selected="true">REFSEQ_RNA</option>
2262 <option value="REFSEQ_RNA_PREDICTED" selected="true">REFSEQ_RNA_PREDICTED</option>
2263 <option value="RFAM" selected="true">RFAM</option>
2264 <option value="RGD" selected="true">RGD</option>
2265 <option value="RNACENTRAL" selected="true">RNACENTRAL</option>
2266 <option value="SHARES_CDS_AND_UTR_WITH_OTTT" selected="true">SHARES_CDS_AND_UTR_WITH_OTTT</option>
2267 <option value="SHARES_CDS_WITH_OTTT" selected="true">SHARES_CDS_WITH_OTTT</option>
2268 <option value="TRANSFAC" selected="true">TRANSFAC</option>
2269 <option value="UCSC" selected="true">UCSC</option>
2270 <option value="UNIGENE" selected="true">UNIGENE</option>
2271 <option value="UNIPARC" selected="true">UNIPARC</option>
2272 <option value="UNIPATHWAY" selected="true">UNIPATHWAY</option>
2273 <option value="UNIPROT" selected="true">UNIPROT</option>
2274 <option value="VEGA_GENE" selected="true">VEGA_GENE</option>
2275 <option value="VEGA_TRANSCRIPT" selected="true">VEGA_TRANSCRIPT</option>
2276 <option value="VEGA_TRANSLATION" selected="true">VEGA_TRANSLATION</option>
2277 <option value="VGNC" selected="true">VGNC</option>
2278 <option value="WIKIGENE" selected="true">WIKIGENE</option>
2279 <option value="WORMBASE_GENE" selected="true">WORMBASE_GENE</option>
2280 <option value="WORMBASE_GSEQNAME" selected="true">WORMBASE_GSEQNAME</option>
2281 <option value="WORMBASE_LOCUS" selected="true">WORMBASE_LOCUS</option>
2282 <option value="WORMBASE_TRANSCRIPT" selected="true">WORMBASE_TRANSCRIPT</option>
2283 <option value="WORMPEP_ID" selected="true">WORMPEP_ID</option>
2284 <option value="XENBASE" selected="true">XENBASE</option>
2285 <option value="ZFIN_ID" selected="true">ZFIN_ID</option>
2286 <option value="ZFIN_XPAT" selected="true">ZFIN_XPAT</option>
2287 <option value="description" selected="true">description</option>
2288 <option value="domain_source" selected="true">domain_source</option>
2289 <option value="exon" selected="true">exon</option>
2290 <option value="exon_count" selected="true">exon_count</option>
2291 <option value="featuretype" selected="true">featuretype</option>
2292 <option value="gene_name" selected="true">gene_name</option>
2293 <option value="gene_synonym" selected="true">gene_synonym</option>
2294 <option value="id" selected="true">id</option>
2295 <option value="name" selected="true">name</option>
2296 <option value="peptide" selected="true">peptide</option>
2297 <option value="source" selected="true">source</option>
2298 <option value="species" selected="true">species</option>
2299 <option value="system_name" selected="true">system_name</option>
2300 <option value="transcript" selected="true">transcript</option>
2301 <option value="transcript_count" selected="true">transcript_count</option>
2302 <validator type="no_options" message="Please select at least one field" />
2303 </param>
2304 <repeat name="queries" title="Add a query">
2305 <param name="combination_operation" type="select" label="Combination operation" >
2306 <option value="AND">AND</option>
2307 <option value="OR">OR</option>
2308 <option value="NOT">NOT</option>
2309 </param>
2310 <param name="query_field" type="select" label="Fields" >
2311 <option value="ARRAYEXPRESS">ARRAYEXPRESS</option>
2312 <option value="BIOGRID">BIOGRID</option>
2313 <option value="CCDS">CCDS</option>
2314 <option value="CINT_ANISEED_V1">CINT_ANISEED_V1</option>
2315 <option value="CINT_JGI_V1">CINT_JGI_V1</option>
2316 <option value="CLONE_BASED_ENSEMBL_GENE">CLONE_BASED_ENSEMBL_GENE</option>
2317 <option value="CLONE_BASED_ENSEMBL_TRANSCRIPT">CLONE_BASED_ENSEMBL_TRANSCRIPT</option>
2318 <option value="CLONE_BASED_VEGA_GENE">CLONE_BASED_VEGA_GENE</option>
2319 <option value="CLONE_BASED_VEGA_TRANSCRIPT">CLONE_BASED_VEGA_TRANSCRIPT</option>
2320 <option value="DBASS3">DBASS3</option>
2321 <option value="DBASS5">DBASS5</option>
2322 <option value="EC_NUMBER">EC_NUMBER</option>
2323 <option value="EMBL">EMBL</option>
2324 <option value="ENSEMBL">ENSEMBL</option>
2325 <option value="ENSEMBLGENOMES_ORTHOLOG">ENSEMBLGENOMES_ORTHOLOG</option>
2326 <option value="ENSEMBLVARIATION">ENSEMBLVARIATION</option>
2327 <option value="ENSEMBL_ORTHOLOG">ENSEMBL_ORTHOLOG</option>
2328 <option value="ENSG">ENSG</option>
2329 <option value="ENSP_IDENT">ENSP_IDENT</option>
2330 <option value="ENST_CDS">ENST_CDS</option>
2331 <option value="ENST_IDENT">ENST_IDENT</option>
2332 <option value="ENS_LRG_GENE">ENS_LRG_GENE</option>
2333 <option value="ENS_LRG_TRANSCRIPT">ENS_LRG_TRANSCRIPT</option>
2334 <option value="ENTREZGENE">ENTREZGENE</option>
2335 <option value="ENTREZGENE_TRANS_NAME">ENTREZGENE_TRANS_NAME</option>
2336 <option value="EPD">EPD</option>
2337 <option value="FLYBASECGID_GENE">FLYBASECGID_GENE</option>
2338 <option value="FLYBASECGID_TRANSCRIPT">FLYBASECGID_TRANSCRIPT</option>
2339 <option value="FLYBASECGID_TRANSLATION">FLYBASECGID_TRANSLATION</option>
2340 <option value="FLYBASENAME_GENE">FLYBASENAME_GENE</option>
2341 <option value="FLYBASENAME_TRANSCRIPT">FLYBASENAME_TRANSCRIPT</option>
2342 <option value="FLYBASENAME_TRANSLATION">FLYBASENAME_TRANSLATION</option>
2343 <option value="FLYBASE_ANNOTATION_ID">FLYBASE_ANNOTATION_ID</option>
2344 <option value="FLYBASE_GENE_ID">FLYBASE_GENE_ID</option>
2345 <option value="FLYBASE_TRANSCRIPT_ID">FLYBASE_TRANSCRIPT_ID</option>
2346 <option value="FLYBASE_TRANSLATION_ID">FLYBASE_TRANSLATION_ID</option>
2347 <option value="FLYREACTOME">FLYREACTOME</option>
2348 <option value="GENEDB">GENEDB</option>
2349 <option value="GENOMERNAI">GENOMERNAI</option>
2350 <option value="GO">GO</option>
2351 <option value="GOSLIM_GOA">GOSLIM_GOA</option>
2352 <option value="HGNC">HGNC</option>
2353 <option value="HGNC_TRANS_NAME">HGNC_TRANS_NAME</option>
2354 <option value="HPA">HPA</option>
2355 <option value="IMGT_GENE_DB">IMGT_GENE_DB</option>
2356 <option value="IMGT_HLA">IMGT_HLA</option>
2357 <option value="INTERACTIVEFLY">INTERACTIVEFLY</option>
2358 <option value="KEGG_ENZYME">KEGG_ENZYME</option>
2359 <option value="LRG">LRG</option>
2360 <option value="MEROPS">MEROPS</option>
2361 <option value="METACYC">METACYC</option>
2362 <option value="MGI">MGI</option>
2363 <option value="MGI_TRANS_NAME">MGI_TRANS_NAME</option>
2364 <option value="MIM_GENE">MIM_GENE</option>
2365 <option value="MIM_MORBID">MIM_MORBID</option>
2366 <option value="MIRBASE">MIRBASE</option>
2367 <option value="MIRBASE_TRANS_NAME">MIRBASE_TRANS_NAME</option>
2368 <option value="MITODROME">MITODROME</option>
2369 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
2370 <option value="OTTG">OTTG</option>
2371 <option value="OTTP">OTTP</option>
2372 <option value="OTTT">OTTT</option>
2373 <option value="OXFORD_FGU_OA_GENE">OXFORD_FGU_OA_GENE</option>
2374 <option value="OXFORD_FGU_OA_TSCRIPT">OXFORD_FGU_OA_TSCRIPT</option>
2375 <option value="PDB">PDB</option>
2376 <option value="PLATYPUS_OLFACTORY_RECEPTOR">PLATYPUS_OLFACTORY_RECEPTOR</option>
2377 <option value="PROTEIN_ID">PROTEIN_ID</option>
2378 <option value="PUBMED">PUBMED</option>
2379 <option value="QUICK_GO">QUICK_GO</option>
2380 <option value="REACTOME">REACTOME</option>
2381 <option value="REACTOME_GENE">REACTOME_GENE</option>
2382 <option value="REACTOME_TRANSCRIPT">REACTOME_TRANSCRIPT</option>
2383 <option value="REFSEQ_DNA">REFSEQ_DNA</option>
2384 <option value="REFSEQ_DNA_PREDICTED">REFSEQ_DNA_PREDICTED</option>
2385 <option value="REFSEQ_GENOMIC">REFSEQ_GENOMIC</option>
2386 <option value="REFSEQ_MRNA">REFSEQ_MRNA</option>
2387 <option value="REFSEQ_MRNA_PREDICTED">REFSEQ_MRNA_PREDICTED</option>
2388 <option value="REFSEQ_NCRNA">REFSEQ_NCRNA</option>
2389 <option value="REFSEQ_NCRNA_PREDICTED">REFSEQ_NCRNA_PREDICTED</option>
2390 <option value="REFSEQ_PEPTIDE">REFSEQ_PEPTIDE</option>
2391 <option value="REFSEQ_PEPTIDE_PREDICTED">REFSEQ_PEPTIDE_PREDICTED</option>
2392 <option value="REFSEQ_RNA">REFSEQ_RNA</option>
2393 <option value="REFSEQ_RNA_PREDICTED">REFSEQ_RNA_PREDICTED</option>
2394 <option value="RFAM">RFAM</option>
2395 <option value="RFAM_TRANS_NAME">RFAM_TRANS_NAME</option>
2396 <option value="RGD">RGD</option>
2397 <option value="RGD_TRANS_NAME">RGD_TRANS_NAME</option>
2398 <option value="RNACENTRAL">RNACENTRAL</option>
2399 <option value="SGD_GENE">SGD_GENE</option>
2400 <option value="SGD_TRANSCRIPT">SGD_TRANSCRIPT</option>
2401 <option value="SHARES_CDS_AND_UTR_WITH_OTTT">SHARES_CDS_AND_UTR_WITH_OTTT</option>
2402 <option value="SHARES_CDS_WITH_OTTT">SHARES_CDS_WITH_OTTT</option>
2403 <option value="TRANSFAC">TRANSFAC</option>
2404 <option value="UCSC">UCSC</option>
2405 <option value="UNIGENE">UNIGENE</option>
2406 <option value="UNIPARC">UNIPARC</option>
2407 <option value="UNIPATHWAY">UNIPATHWAY</option>
2408 <option value="UNIPROT">UNIPROT</option>
2409 <option value="VEGA_GENE">VEGA_GENE</option>
2410 <option value="VEGA_TRANSCRIPT">VEGA_TRANSCRIPT</option>
2411 <option value="VEGA_TRANSLATION">VEGA_TRANSLATION</option>
2412 <option value="VGNC">VGNC</option>
2413 <option value="VGNC_TRANS_NAME">VGNC_TRANS_NAME</option>
2414 <option value="WIKIGENE">WIKIGENE</option>
2415 <option value="WORMBASE_GENE">WORMBASE_GENE</option>
2416 <option value="WORMBASE_GSEQNAME">WORMBASE_GSEQNAME</option>
2417 <option value="WORMBASE_LOCUS">WORMBASE_LOCUS</option>
2418 <option value="WORMBASE_TRANSCRIPT">WORMBASE_TRANSCRIPT</option>
2419 <option value="WORMPEP_ID">WORMPEP_ID</option>
2420 <option value="XENBASE">XENBASE</option>
2421 <option value="XENBASE_TRANS_NAME">XENBASE_TRANS_NAME</option>
2422 <option value="ZFIN_ID">ZFIN_ID</option>
2423 <option value="ZFIN_ID_TRANS_NAME">ZFIN_ID_TRANS_NAME</option>
2424 <option value="ZFIN_XPAT">ZFIN_XPAT</option>
2425 <option value="alt_allele">alt_allele</option>
2426 <option value="dbass3_synonym">dbass3_synonym</option>
2427 <option value="dbass5_synonym">dbass5_synonym</option>
2428 <option value="description">description</option>
2429 <option value="domain_source">domain_source</option>
2430 <option value="entrezgene_synonym">entrezgene_synonym</option>
2431 <option value="exon">exon</option>
2432 <option value="flybase_gene_id_synonym">flybase_gene_id_synonym</option>
2433 <option value="flybase_transcript_id_synonym">flybase_transcript_id_synonym</option>
2434 <option value="flybase_translation_id_synonym">flybase_translation_id_synonym</option>
2435 <option value="gene_name">gene_name</option>
2436 <option value="gene_synonym">gene_synonym</option>
2437 <option value="haplotype">haplotype</option>
2438 <option value="hgnc_synonym">hgnc_synonym</option>
2439 <option value="id">id</option>
2440 <option value="mgi_synonym">mgi_synonym</option>
2441 <option value="mim_gene_synonym">mim_gene_synonym</option>
2442 <option value="mim_morbid_synonym">mim_morbid_synonym</option>
2443 <option value="name">name</option>
2444 <option value="peptide">peptide</option>
2445 <option value="rgd_synonym">rgd_synonym</option>
2446 <option value="sgd_gene_synonym">sgd_gene_synonym</option>
2447 <option value="source">source</option>
2448 <option value="species">species</option>
2449 <option value="system_name">system_name</option>
2450 <option value="transcript">transcript</option>
2451 <option value="uniprot_synonym">uniprot_synonym</option>
2452 <option value="zfin_id_synonym">zfin_id_synonym</option>
2453 </param>
2454 <conditional name="comp_operation">
2455 <param name="operation" type="select" label="Comparison operation" >
2456 <option value="equal">equal</option>
2457 <option value="not">not</option>
2458 <option value="range">range</option>
2459 </param>
2460 <when value="equal">
2461 <param name="query_text" type="text" label="Searched term"/>
2462 </when>
2463 <when value="not">
2464 <param name="query_text" type="text" label="Searched term"/>
2465 <param name="not_query_text" type="text" label="Limiting term"/>
2466 </when>
2467 <when value="range">
2468 <param name="min" type="text" label="From"/>
2469 <param name="max" type="text" label="To"/>
2470 </when>
2471 </conditional>
2472 </repeat>
2473 </when>
2474
2475 <when value="ensemblGenomes_gene">
2476 <param name="fields" type="select" label="Fields to extract" multiple="true">
2477 <option value="AGD_GENE" selected="true">AGD_GENE</option>
2478 <option value="AGD_TRANSCRIPT" selected="true">AGD_TRANSCRIPT</option>
2479 <option value="ANT_GENOMES_PORTAL" selected="true">ANT_GENOMES_PORTAL</option>
2480 <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option>
2481 <option value="BINDINGDB" selected="true">BINDINGDB</option>
2482 <option value="BIOCYC" selected="true">BIOCYC</option>
2483 <option value="BIOGRID" selected="true">BIOGRID</option>
2484 <option value="BRENDA" selected="true">BRENDA</option>
2485 <option value="BROAD_MAGNAPORTHE_DB" selected="true">BROAD_MAGNAPORTHE_DB</option>
2486 <option value="BROAD_P_NODORUM_GENE" selected="true">BROAD_P_NODORUM_GENE</option>
2487 <option value="CADRE_AFUM_A1163" selected="true">CADRE_AFUM_A1163</option>
2488 <option value="DIP" selected="true">DIP</option>
2489 <option value="DISPROT" selected="true">DISPROT</option>
2490 <option value="DRUGBANK" selected="true">DRUGBANK</option>
2491 <option value="ECHOBASE" selected="true">ECHOBASE</option>
2492 <option value="ECOGENE" selected="true">ECOGENE</option>
2493 <option value="EC_NUMBER" selected="true">EC_NUMBER</option>
2494 <option value="EMBL" selected="true">EMBL</option>
2495 <option value="ENSEMBL" selected="true">ENSEMBL</option>
2496 <option value="ENTREZGENE" selected="true">ENTREZGENE</option>
2497 <option value="EPD" selected="true">EPD</option>
2498 <option value="FGDB" selected="true">FGDB</option>
2499 <option value="FLYBASECGID_GENE" selected="true">FLYBASECGID_GENE</option>
2500 <option value="FLYBASECGID_TRANSCRIPT" selected="true">FLYBASECGID_TRANSCRIPT</option>
2501 <option value="FLYBASENAME_GENE" selected="true">FLYBASENAME_GENE</option>
2502 <option value="FLYBASENAME_TRANSCRIPT" selected="true">FLYBASENAME_TRANSCRIPT</option>
2503 <option value="FLYBASENAME_TRANSLATION" selected="true">FLYBASENAME_TRANSLATION</option>
2504 <option value="FLYBASE_ANNOTATION_ID" selected="true">FLYBASE_ANNOTATION_ID</option>
2505 <option value="FLYBASE_GENE_ID" selected="true">FLYBASE_GENE_ID</option>
2506 <option value="FLYBASE_TRANSCRIPT_ID" selected="true">FLYBASE_TRANSCRIPT_ID</option>
2507 <option value="FLYBASE_TRANSLATION_ID" selected="true">FLYBASE_TRANSLATION_ID</option>
2508 <option value="FLYREACTOME" selected="true">FLYREACTOME</option>
2509 <option value="GENBANK" selected="true">GENBANK</option>
2510 <option value="GENEDB" selected="true">GENEDB</option>
2511 <option value="GENEID" selected="true">GENEID</option>
2512 <option value="GENOMERNAI" selected="true">GENOMERNAI</option>
2513 <option value="GFBGP" selected="true">GFBGP</option>
2514 <option value="GO" selected="true">GO</option>
2515 <option value="GOA" selected="true">GOA</option>
2516 <option value="GRAMENE_PLANT_REACTOME" selected="true">GRAMENE_PLANT_REACTOME</option>
2517 <option value="HSSP" selected="true">HSSP</option>
2518 <option value="IMMUNODB" selected="true">IMMUNODB</option>
2519 <option value="INTACT" selected="true">INTACT</option>
2520 <option value="INTENZ" selected="true">INTENZ</option>
2521 <option value="INTERPRO" selected="true">INTERPRO</option>
2522 <option value="KEGG" selected="true">KEGG</option>
2523 <option value="KEGG_ENZYME" selected="true">KEGG_ENZYME</option>
2524 <option value="LEGIOLIST" selected="true">LEGIOLIST</option>
2525 <option value="MEROPS" selected="true">MEROPS</option>
2526 <option value="METACYC" selected="true">METACYC</option>
2527 <option value="MGP" selected="true">MGP</option>
2528 <option value="MINT" selected="true">MINT</option>
2529 <option value="MIRBASE" selected="true">MIRBASE</option>
2530 <option value="MIRBASE_GENE_NAME" selected="true">MIRBASE_GENE_NAME</option>
2531 <option value="MIRBASE_TRANS_NAME" selected="true">MIRBASE_TRANS_NAME</option>
2532 <option value="MITODROME" selected="true">MITODROME</option>
2533 <option value="MTGD" selected="true">MTGD</option>
2534 <option value="MYCGR3_JGI_V2.0_GENE" selected="true">MYCGR3_JGI_V2.0_GENE</option>
2535 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
2536 <option value="NECHA_JGI_V2.0" selected="true">NECHA_JGI_V2.0</option>
2537 <option value="NHPRTR" selected="true">NHPRTR</option>
2538 <option value="PBO" selected="true">PBO</option>
2539 <option value="PDB" selected="true">PDB</option>
2540 <option value="PDBSUM" selected="true">PDBSUM</option>
2541 <option value="PEROXIBASE" selected="true">PEROXIBASE</option>
2542 <option value="PGD_GENE" selected="true">PGD_GENE</option>
2543 <option value="PGSC_GENE" selected="true">PGSC_GENE</option>
2544 <option value="PIR" selected="true">PIR</option>
2545 <option value="POMBASE_GENE_NAME" selected="true">POMBASE_GENE_NAME</option>
2546 <option value="POMBASE_TRANSCRIPT" selected="true">POMBASE_TRANSCRIPT</option>
2547 <option value="PRIDE" selected="true">PRIDE</option>
2548 <option value="PROTEIN_ID" selected="true">PROTEIN_ID</option>
2549 <option value="PROTEIN_ID_PREDICTED" selected="true">PROTEIN_ID_PREDICTED</option>
2550 <option value="PSEUDOCAP" selected="true">PSEUDOCAP</option>
2551 <option value="PUBMED" selected="true">PUBMED</option>
2552 <option value="PUBMED_POMBASE" selected="true">PUBMED_POMBASE</option>
2553 <option value="REACTOME" selected="true">REACTOME</option>
2554 <option value="REBASE" selected="true">REBASE</option>
2555 <option value="REFSEQ" selected="true">REFSEQ</option>
2556 <option value="REFSEQ_DNA" selected="true">REFSEQ_DNA</option>
2557 <option value="REFSEQ_DNA_PREDICTED" selected="true">REFSEQ_DNA_PREDICTED</option>
2558 <option value="REFSEQ_MRNA" selected="true">REFSEQ_MRNA</option>
2559 <option value="REFSEQ_MRNA_PREDICTED" selected="true">REFSEQ_MRNA_PREDICTED</option>
2560 <option value="REFSEQ_NCRNA" selected="true">REFSEQ_NCRNA</option>
2561 <option value="REFSEQ_NCRNA_PREDICTED" selected="true">REFSEQ_NCRNA_PREDICTED</option>
2562 <option value="REFSEQ_PEPTIDE" selected="true">REFSEQ_PEPTIDE</option>
2563 <option value="REFSEQ_PEPTIDE_PREDICTED" selected="true">REFSEQ_PEPTIDE_PREDICTED</option>
2564 <option value="RFAM" selected="true">RFAM</option>
2565 <option value="RFAM_GENE" selected="true">RFAM_GENE</option>
2566 <option value="RHEA" selected="true">RHEA</option>
2567 <option value="RIBOSOMAL_PROTEIN_GENE_DATABASE" selected="true">RIBOSOMAL_PROTEIN_GENE_DATABASE</option>
2568 <option value="SCHISTODB" selected="true">SCHISTODB</option>
2569 <option value="SGD" selected="true">SGD</option>
2570 <option value="SO" selected="true">SO</option>
2571 <option value="SPBASE" selected="true">SPBASE</option>
2572 <option value="SPD" selected="true">SPD</option>
2573 <option value="STRING" selected="true">STRING</option>
2574 <option value="SUBTILIST" selected="true">SUBTILIST</option>
2575 <option value="SWISS_MODEL" selected="true">SWISS_MODEL</option>
2576 <option value="TAIR_SYMBOL" selected="true">TAIR_SYMBOL</option>
2577 <option value="TRANSFAC" selected="true">TRANSFAC</option>
2578 <option value="TUBERCULIST" selected="true">TUBERCULIST</option>
2579 <option value="TUBER_GENOSCOPE_GENE" selected="true">TUBER_GENOSCOPE_GENE</option>
2580 <option value="UNIGENE" selected="true">UNIGENE</option>
2581 <option value="UNIPARC" selected="true">UNIPARC</option>
2582 <option value="UNIPATHWAY" selected="true">UNIPATHWAY</option>
2583 <option value="UNIPROT" selected="true">UNIPROT</option>
2584 <option value="VB_COMMUNITY_ANNOTATION" selected="true">VB_COMMUNITY_ANNOTATION</option>
2585 <option value="VB_EXTERNAL_DESCRIPTION" selected="true">VB_EXTERNAL_DESCRIPTION</option>
2586 <option value="VB_RNA_DESCRIPTION" selected="true">VB_RNA_DESCRIPTION</option>
2587 <option value="WIKIGENE" selected="true">WIKIGENE</option>
2588 <option value="WORMBASE_GENE" selected="true">WORMBASE_GENE</option>
2589 <option value="WORMBASE_GSEQNAME" selected="true">WORMBASE_GSEQNAME</option>
2590 <option value="WORMBASE_LOCUS" selected="true">WORMBASE_LOCUS</option>
2591 <option value="WORMBASE_TRANSCRIPT" selected="true">WORMBASE_TRANSCRIPT</option>
2592 <option value="WORMPEP_ID" selected="true">WORMPEP_ID</option>
2593 <option value="ZNGP" selected="true">ZNGP</option>
2594 <option value="collection" selected="true">collection</option>
2595 <option value="database" selected="true">database</option>
2596 <option value="description" selected="true">description</option>
2597 <option value="domain_source" selected="true">domain_source</option>
2598 <option value="exon" selected="true">exon</option>
2599 <option value="exon_count" selected="true">exon_count</option>
2600 <option value="featuretype" selected="true">featuretype</option>
2601 <option value="gene_name" selected="true">gene_name</option>
2602 <option value="gene_synonym" selected="true">gene_synonym</option>
2603 <option value="genetree" selected="true">genetree</option>
2604 <option value="genomic_unit" selected="true">genomic_unit</option>
2605 <option value="id" selected="true">id</option>
2606 <option value="location" selected="true">location</option>
2607 <option value="name" selected="true">name</option>
2608 <option value="peptide" selected="true">peptide</option>
2609 <option value="source" selected="true">source</option>
2610 <option value="species" selected="true">species</option>
2611 <option value="system_name" selected="true">system_name</option>
2612 <option value="transcript" selected="true">transcript</option>
2613 <option value="transcript_count" selected="true">transcript_count</option>
2614 <validator type="no_options" message="Please select at least one field" />
2615 </param>
2616 <repeat name="queries" title="Add a query">
2617 <param name="combination_operation" type="select" label="Combination operation" >
2618 <option value="AND">AND</option>
2619 <option value="OR">OR</option>
2620 <option value="NOT">NOT</option>
2621 </param>
2622 <param name="query_field" type="select" label="Fields" >
2623 <option value="AGD_GENE">AGD_GENE</option>
2624 <option value="AGD_TRANSCRIPT">AGD_TRANSCRIPT</option>
2625 <option value="AGI_GENE">AGI_GENE</option>
2626 <option value="AGI_TRANSCRIPT">AGI_TRANSCRIPT</option>
2627 <option value="ANT_GENOMES_PORTAL">ANT_GENOMES_PORTAL</option>
2628 <option value="ARRAYEXPRESS">ARRAYEXPRESS</option>
2629 <option value="ASPGD_GENE">ASPGD_GENE</option>
2630 <option value="ASPGD_TRANSCRIPT">ASPGD_TRANSCRIPT</option>
2631 <option value="BAYLORCOLLEGE">BAYLORCOLLEGE</option>
2632 <option value="BGI_EST_CLUSTER">BGI_EST_CLUSTER</option>
2633 <option value="BGI_GENE">BGI_GENE</option>
2634 <option value="BINDINGDB">BINDINGDB</option>
2635 <option value="BIOCYC">BIOCYC</option>
2636 <option value="BIOGRID">BIOGRID</option>
2637 <option value="BRAD_TRANSCRIPT">BRAD_TRANSCRIPT</option>
2638 <option value="BRENDA">BRENDA</option>
2639 <option value="BROAD_F_OXYSPORUM">BROAD_F_OXYSPORUM</option>
2640 <option value="BROAD_G_MONILIFORMIS">BROAD_G_MONILIFORMIS</option>
2641 <option value="BROAD_G_ZEAE">BROAD_G_ZEAE</option>
2642 <option value="BROAD_MAGNAPORTHE_DB">BROAD_MAGNAPORTHE_DB</option>
2643 <option value="BROAD_M_VIOLACEUM">BROAD_M_VIOLACEUM</option>
2644 <option value="BROAD_P_INFESTANS">BROAD_P_INFESTANS</option>
2645 <option value="BROAD_P_NODORUM_GENE">BROAD_P_NODORUM_GENE</option>
2646 <option value="BROAD_P_TRITICINA">BROAD_P_TRITICINA</option>
2647 <option value="CADRE">CADRE</option>
2648 <option value="CADRE_AFUM_A1163">CADRE_AFUM_A1163</option>
2649 <option value="CADRE_GENE">CADRE_GENE</option>
2650 <option value="CADRE_TRANSCRIPT">CADRE_TRANSCRIPT</option>
2651 <option value="CELERA_GENE">CELERA_GENE</option>
2652 <option value="CELERA_PEP">CELERA_PEP</option>
2653 <option value="CELERA_TRANS">CELERA_TRANS</option>
2654 <option value="DIP">DIP</option>
2655 <option value="DISPROT">DISPROT</option>
2656 <option value="DRUGBANK">DRUGBANK</option>
2657 <option value="ECHOBASE">ECHOBASE</option>
2658 <option value="ECOGENE">ECOGENE</option>
2659 <option value="EC_NUMBER">EC_NUMBER</option>
2660 <option value="EMBL">EMBL</option>
2661 <option value="ENA_FEATURE_GENE">ENA_FEATURE_GENE</option>
2662 <option value="ENA_FEATURE_PROTEIN">ENA_FEATURE_PROTEIN</option>
2663 <option value="ENA_FEATURE_TRANSCRIPT">ENA_FEATURE_TRANSCRIPT</option>
2664 <option value="ENA_GENE">ENA_GENE</option>
2665 <option value="ENA_TRANSCRIPT">ENA_TRANSCRIPT</option>
2666 <option value="ENSEMBL">ENSEMBL</option>
2667 <option value="ENTREZGENE">ENTREZGENE</option>
2668 <option value="EPD">EPD</option>
2669 <option value="FGDB">FGDB</option>
2670 <option value="FLYBASECGID_GENE">FLYBASECGID_GENE</option>
2671 <option value="FLYBASECGID_TRANSCRIPT">FLYBASECGID_TRANSCRIPT</option>
2672 <option value="FLYBASECGID_TRANSLATION">FLYBASECGID_TRANSLATION</option>
2673 <option value="FLYBASENAME_GENE">FLYBASENAME_GENE</option>
2674 <option value="FLYBASENAME_TRANSCRIPT">FLYBASENAME_TRANSCRIPT</option>
2675 <option value="FLYBASENAME_TRANSLATION">FLYBASENAME_TRANSLATION</option>
2676 <option value="FLYBASE_ANNOTATION_ID">FLYBASE_ANNOTATION_ID</option>
2677 <option value="FLYBASE_GENE_ID">FLYBASE_GENE_ID</option>
2678 <option value="FLYBASE_TRANSCRIPT_ID">FLYBASE_TRANSCRIPT_ID</option>
2679 <option value="FLYBASE_TRANSLATION_ID">FLYBASE_TRANSLATION_ID</option>
2680 <option value="FLYREACTOME">FLYREACTOME</option>
2681 <option value="FSTS">FSTS</option>
2682 <option value="FYPO">FYPO</option>
2683 <option value="GENBANK">GENBANK</option>
2684 <option value="GENEDB">GENEDB</option>
2685 <option value="GENEID">GENEID</option>
2686 <option value="GENEINDEX">GENEINDEX</option>
2687 <option value="GENOMERNAI">GENOMERNAI</option>
2688 <option value="GFBGP">GFBGP</option>
2689 <option value="GO">GO</option>
2690 <option value="GOA">GOA</option>
2691 <option value="GRAMENE_MARKERSDB_EST">GRAMENE_MARKERSDB_EST</option>
2692 <option value="GRAMENE_MARKERSDB_MRNA">GRAMENE_MARKERSDB_MRNA</option>
2693 <option value="GRAMENE_PLANT_REACTOME">GRAMENE_PLANT_REACTOME</option>
2694 <option value="HSSP">HSSP</option>
2695 <option value="IBSC">IBSC</option>
2696 <option value="IMMUNODB">IMMUNODB</option>
2697 <option value="INTACT">INTACT</option>
2698 <option value="INTENZ">INTENZ</option>
2699 <option value="INTERACTIVEFLY">INTERACTIVEFLY</option>
2700 <option value="INTERPRO">INTERPRO</option>
2701 <option value="JGI_GENE">JGI_GENE</option>
2702 <option value="JGI_TRANSCRIPT">JGI_TRANSCRIPT</option>
2703 <option value="KEGG">KEGG</option>
2704 <option value="KEGG_ENZYME">KEGG_ENZYME</option>
2705 <option value="LEGIOLIST">LEGIOLIST</option>
2706 <option value="LGBPRATT_EST_CLUSTER">LGBPRATT_EST_CLUSTER</option>
2707 <option value="LNCC">LNCC</option>
2708 <option value="MEROPS">MEROPS</option>
2709 <option value="METACYC">METACYC</option>
2710 <option value="MGP">MGP</option>
2711 <option value="MINT">MINT</option>
2712 <option value="MIRBASE">MIRBASE</option>
2713 <option value="MIRBASE_GENE_NAME">MIRBASE_GENE_NAME</option>
2714 <option value="MIRBASE_TRANS_NAME">MIRBASE_TRANS_NAME</option>
2715 <option value="MITODROME">MITODROME</option>
2716 <option value="MOD">MOD</option>
2717 <option value="MTGD">MTGD</option>
2718 <option value="MYCGR3_JGI_V2.0_GENE">MYCGR3_JGI_V2.0_GENE</option>
2719 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
2720 <option value="NECHA_JGI_V2.0">NECHA_JGI_V2.0</option>
2721 <option value="NHPRTR">NHPRTR</option>
2722 <option value="PBO">PBO</option>
2723 <option value="PDB">PDB</option>
2724 <option value="PDBSUM">PDBSUM</option>
2725 <option value="PEROXIBASE">PEROXIBASE</option>
2726 <option value="PGD_GENE">PGD_GENE</option>
2727 <option value="PGSC_GENE">PGSC_GENE</option>
2728 <option value="PHI">PHI</option>
2729 <option value="PHYRA_JGI_V1.1">PHYRA_JGI_V1.1</option>
2730 <option value="PIR">PIR</option>
2731 <option value="PLANTGDB_PUT">PLANTGDB_PUT</option>
2732 <option value="PO">PO</option>
2733 <option value="POMBASE_GENE_NAME">POMBASE_GENE_NAME</option>
2734 <option value="POMBASE_ORTHOLOG">POMBASE_ORTHOLOG</option>
2735 <option value="POMBASE_TRANSCRIPT">POMBASE_TRANSCRIPT</option>
2736 <option value="POMBASE_TRANSLATION">POMBASE_TRANSLATION</option>
2737 <option value="PRIDE">PRIDE</option>
2738 <option value="PROTEIN_ID">PROTEIN_ID</option>
2739 <option value="PROTEIN_ID_PREDICTED">PROTEIN_ID_PREDICTED</option>
2740 <option value="PSEUDOCAP">PSEUDOCAP</option>
2741 <option value="PUBMED">PUBMED</option>
2742 <option value="PUBMED_POMBASE">PUBMED_POMBASE</option>
2743 <option value="RAP_GENE">RAP_GENE</option>
2744 <option value="REACTOME">REACTOME</option>
2745 <option value="REBASE">REBASE</option>
2746 <option value="REFSEQ">REFSEQ</option>
2747 <option value="REFSEQ_DNA">REFSEQ_DNA</option>
2748 <option value="REFSEQ_DNA_PREDICTED">REFSEQ_DNA_PREDICTED</option>
2749 <option value="REFSEQ_MRNA">REFSEQ_MRNA</option>
2750 <option value="REFSEQ_MRNA_PREDICTED">REFSEQ_MRNA_PREDICTED</option>
2751 <option value="REFSEQ_NCRNA">REFSEQ_NCRNA</option>
2752 <option value="REFSEQ_NCRNA_PREDICTED">REFSEQ_NCRNA_PREDICTED</option>
2753 <option value="REFSEQ_PEPTIDE">REFSEQ_PEPTIDE</option>
2754 <option value="REFSEQ_PEPTIDE_PREDICTED">REFSEQ_PEPTIDE_PREDICTED</option>
2755 <option value="RFAM">RFAM</option>
2756 <option value="RFAM_GENE">RFAM_GENE</option>
2757 <option value="RFAM_TRANS_NAME">RFAM_TRANS_NAME</option>
2758 <option value="RHEA">RHEA</option>
2759 <option value="RIBOSOMAL_PROTEIN_GENE_DATABASE">RIBOSOMAL_PROTEIN_GENE_DATABASE</option>
2760 <option value="RNAMMER">RNAMMER</option>
2761 <option value="SCHISTODB">SCHISTODB</option>
2762 <option value="SGD">SGD</option>
2763 <option value="SGD_GENE">SGD_GENE</option>
2764 <option value="SGD_TRANSCRIPT">SGD_TRANSCRIPT</option>
2765 <option value="SMAR_COMMUNITY_ANNOTATION">SMAR_COMMUNITY_ANNOTATION</option>
2766 <option value="SO">SO</option>
2767 <option value="SPBASE">SPBASE</option>
2768 <option value="SPD">SPD</option>
2769 <option value="STRING">STRING</option>
2770 <option value="SUBTILIST">SUBTILIST</option>
2771 <option value="SWISS_MODEL">SWISS_MODEL</option>
2772 <option value="TAIR_LOCUS">TAIR_LOCUS</option>
2773 <option value="TAIR_SYMBOL">TAIR_SYMBOL</option>
2774 <option value="TIGR_GENEINDEX">TIGR_GENEINDEX</option>
2775 <option value="TIGR_LOCUS">TIGR_LOCUS</option>
2776 <option value="TRANSFAC">TRANSFAC</option>
2777 <option value="TRIAD_JGI_V1.0">TRIAD_JGI_V1.0</option>
2778 <option value="TRNASCAN_SE">TRNASCAN_SE</option>
2779 <option value="TUBERCULIST">TUBERCULIST</option>
2780 <option value="TUBER_GENOSCOPE_GENE">TUBER_GENOSCOPE_GENE</option>
2781 <option value="UNIGENE">UNIGENE</option>
2782 <option value="UNIPARC">UNIPARC</option>
2783 <option value="UNIPATHWAY">UNIPATHWAY</option>
2784 <option value="UNIPROT">UNIPROT</option>
2785 <option value="VB_COMMUNITY_ANNOTATION">VB_COMMUNITY_ANNOTATION</option>
2786 <option value="VB_COMMUNITY_SYMBOL">VB_COMMUNITY_SYMBOL</option>
2787 <option value="VB_EXTERNAL_DESCRIPTION">VB_EXTERNAL_DESCRIPTION</option>
2788 <option value="VB_RNA_DESCRIPTION">VB_RNA_DESCRIPTION</option>
2789 <option value="WIKIGENE">WIKIGENE</option>
2790 <option value="WORMBASE_GENE">WORMBASE_GENE</option>
2791 <option value="WORMBASE_GSEQNAME">WORMBASE_GSEQNAME</option>
2792 <option value="WORMBASE_LOCUS">WORMBASE_LOCUS</option>
2793 <option value="WORMBASE_TRANSCRIPT">WORMBASE_TRANSCRIPT</option>
2794 <option value="WORMPEP_ID">WORMPEP_ID</option>
2795 <option value="ZNGP">ZNGP</option>
2796 <option value="collection">collection</option>
2797 <option value="database">database</option>
2798 <option value="description">description</option>
2799 <option value="domain">domain</option>
2800 <option value="domain_source">domain_source</option>
2801 <option value="exon">exon</option>
2802 <option value="gene_name">gene_name</option>
2803 <option value="gene_synonym">gene_synonym</option>
2804 <option value="gene_version">gene_version</option>
2805 <option value="genetree">genetree</option>
2806 <option value="genomic_unit">genomic_unit</option>
2807 <option value="haplotype">haplotype</option>
2808 <option value="id">id</option>
2809 <option value="id_noversion">id_noversion</option>
2810 <option value="name">name</option>
2811 <option value="peptide">peptide</option>
2812 <option value="peptide_version">peptide_version</option>
2813 <option value="probe">probe</option>
2814 <option value="probeset">probeset</option>
2815 <option value="seq_region_name">seq_region_name</option>
2816 <option value="source">source</option>
2817 <option value="species">species</option>
2818 <option value="system_name">system_name</option>
2819 <option value="transcript">transcript</option>
2820 <option value="transcript_version">transcript_version</option>
2821 </param>
2822 <conditional name="comp_operation">
2823 <param name="operation" type="select" label="Comparison operation" >
2824 <option value="equal">equal</option>
2825 <option value="not">not</option>
2826 <option value="range">range</option>
2827 </param>
2828 <when value="equal">
2829 <param name="query_text" type="text" label="Searched term"/>
2830 </when>
2831 <when value="not">
2832 <param name="query_text" type="text" label="Searched term"/>
2833 <param name="not_query_text" type="text" label="Limiting term"/>
2834 </when>
2835 <when value="range">
2836 <param name="min" type="text" label="From"/>
2837 <param name="max" type="text" label="To"/>
2838 </when>
2839 </conditional>
2840 </repeat>
2841 </when>
2842
2843 <when value="ensemblGenomes_genome">
2844 <param name="fields" type="select" label="Fields to extract" multiple="true">
2845 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
2846 <option value="assembly_accession" selected="true">assembly_accession</option>
2847 <option value="assembly_name" selected="true">assembly_name</option>
2848 <option value="creation_date" selected="true">creation_date</option>
2849 <option value="display_name" selected="true">display_name</option>
2850 <option value="domain_source" selected="true">domain_source</option>
2851 <option value="genebuild" selected="true">genebuild</option>
2852 <option value="genomic_unit" selected="true">genomic_unit</option>
2853 <option value="has_genome_alignments" selected="true">has_genome_alignments</option>
2854 <option value="has_other_alignments" selected="true">has_other_alignments</option>
2855 <option value="has_pan_compara" selected="true">has_pan_compara</option>
2856 <option value="has_variations" selected="true">has_variations</option>
2857 <option value="id" selected="true">id</option>
2858 <option value="last_modification_date" selected="true">last_modification_date</option>
2859 <option value="name" selected="true">name</option>
2860 <option value="production_name" selected="true">production_name</option>
2861 <option value="strain" selected="true">strain</option>
2862 <validator type="no_options" message="Please select at least one field" />
2863 </param>
2864 <repeat name="queries" title="Add a query">
2865 <param name="combination_operation" type="select" label="Combination operation" >
2866 <option value="AND">AND</option>
2867 <option value="OR">OR</option>
2868 <option value="NOT">NOT</option>
2869 </param>
2870 <param name="query_field" type="select" label="Fields" >
2871 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
2872 <option value="alias">alias</option>
2873 <option value="assembly_accession">assembly_accession</option>
2874 <option value="assembly_default">assembly_default</option>
2875 <option value="assembly_name">assembly_name</option>
2876 <option value="classification">classification</option>
2877 <option value="collection">collection</option>
2878 <option value="common_name">common_name</option>
2879 <option value="creation_date">creation_date</option>
2880 <option value="display_name">display_name</option>
2881 <option value="division">division</option>
2882 <option value="domain_source">domain_source</option>
2883 <option value="genebuild">genebuild</option>
2884 <option value="genomic_unit">genomic_unit</option>
2885 <option value="has_genome_alignments">has_genome_alignments</option>
2886 <option value="has_other_alignments">has_other_alignments</option>
2887 <option value="has_pan_compara">has_pan_compara</option>
2888 <option value="has_variations">has_variations</option>
2889 <option value="id">id</option>
2890 <option value="last_modification_date">last_modification_date</option>
2891 <option value="name">name</option>
2892 <option value="production_name">production_name</option>
2893 <option value="scientific_name">scientific_name</option>
2894 <option value="strain">strain</option>
2895 </param>
2896 <conditional name="comp_operation">
2897 <param name="operation" type="select" label="Comparison operation" >
2898 <option value="equal">equal</option>
2899 <option value="not">not</option>
2900 <option value="range">range</option>
2901 </param>
2902 <when value="equal">
2903 <param name="query_text" type="text" label="Searched term"/>
2904 </when>
2905 <when value="not">
2906 <param name="query_text" type="text" label="Searched term"/>
2907 <param name="not_query_text" type="text" label="Limiting term"/>
2908 </when>
2909 <when value="range">
2910 <param name="min" type="text" label="From"/>
2911 <param name="max" type="text" label="To"/>
2912 </when>
2913 </conditional>
2914 </repeat>
2915 </when>
2916
2917 <when value="ensemblGenomes_seqRegion">
2918 <param name="fields" type="select" label="Fields to extract" multiple="true">
2919 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
2920 <option value="coord_system" selected="true">coord_system</option>
2921 <option value="domain_source" selected="true">domain_source</option>
2922 <option value="genomic_unit" selected="true">genomic_unit</option>
2923 <option value="id" selected="true">id</option>
2924 <option value="length" selected="true">length</option>
2925 <option value="location" selected="true">location</option>
2926 <option value="name" selected="true">name</option>
2927 <option value="production_name" selected="true">production_name</option>
2928 <option value="species" selected="true">species</option>
2929 <validator type="no_options" message="Please select at least one field" />
2930 </param>
2931 <repeat name="queries" title="Add a query">
2932 <param name="combination_operation" type="select" label="Combination operation" >
2933 <option value="AND">AND</option>
2934 <option value="OR">OR</option>
2935 <option value="NOT">NOT</option>
2936 </param>
2937 <param name="query_field" type="select" label="Fields" >
2938 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
2939 <option value="coord_system">coord_system</option>
2940 <option value="domain_source">domain_source</option>
2941 <option value="genomic_unit">genomic_unit</option>
2942 <option value="id">id</option>
2943 <option value="id_noversion">id_noversion</option>
2944 <option value="name">name</option>
2945 <option value="production_name">production_name</option>
2946 <option value="species">species</option>
2947 </param>
2948 <conditional name="comp_operation">
2949 <param name="operation" type="select" label="Comparison operation" >
2950 <option value="equal">equal</option>
2951 <option value="not">not</option>
2952 <option value="range">range</option>
2953 </param>
2954 <when value="equal">
2955 <param name="query_text" type="text" label="Searched term"/>
2956 </when>
2957 <when value="not">
2958 <param name="query_text" type="text" label="Searched term"/>
2959 <param name="not_query_text" type="text" label="Limiting term"/>
2960 </when>
2961 <when value="range">
2962 <param name="min" type="text" label="From"/>
2963 <param name="max" type="text" label="To"/>
2964 </when>
2965 </conditional>
2966 </repeat>
2967 </when>
2968
2969 <when value="ensemblGenomes_variant">
2970 <param name="fields" type="select" label="Fields to extract" multiple="true">
2971 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
2972 <option value="associated_gene" selected="true">associated_gene</option>
2973 <option value="description" selected="true">description</option>
2974 <option value="domain_source" selected="true">domain_source</option>
2975 <option value="genomic_unit" selected="true">genomic_unit</option>
2976 <option value="id" selected="true">id</option>
2977 <option value="name" selected="true">name</option>
2978 <option value="phenotype" selected="true">phenotype</option>
2979 <option value="production_name" selected="true">production_name</option>
2980 <option value="species" selected="true">species</option>
2981 <option value="study" selected="true">study</option>
2982 <option value="synonym" selected="true">synonym</option>
2983 <option value="variation_source" selected="true">variation_source</option>
2984 <validator type="no_options" message="Please select at least one field" />
2985 </param>
2986 <repeat name="queries" title="Add a query">
2987 <param name="combination_operation" type="select" label="Combination operation" >
2988 <option value="AND">AND</option>
2989 <option value="OR">OR</option>
2990 <option value="NOT">NOT</option>
2991 </param>
2992 <param name="query_field" type="select" label="Fields" >
2993 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
2994 <option value="associated_gene">associated_gene</option>
2995 <option value="description">description</option>
2996 <option value="domain_source">domain_source</option>
2997 <option value="genomic_unit">genomic_unit</option>
2998 <option value="id">id</option>
2999 <option value="id_noversion">id_noversion</option>
3000 <option value="name">name</option>
3001 <option value="phenotype">phenotype</option>
3002 <option value="production_name">production_name</option>
3003 <option value="species">species</option>
3004 <option value="study">study</option>
3005 <option value="synonym">synonym</option>
3006 <option value="variation_source">variation_source</option>
3007 </param>
3008 <conditional name="comp_operation">
3009 <param name="operation" type="select" label="Comparison operation" >
3010 <option value="equal">equal</option>
3011 <option value="not">not</option>
3012 <option value="range">range</option>
3013 </param>
3014 <when value="equal">
3015 <param name="query_text" type="text" label="Searched term"/>
3016 </when>
3017 <when value="not">
3018 <param name="query_text" type="text" label="Searched term"/>
3019 <param name="not_query_text" type="text" label="Limiting term"/>
3020 </when>
3021 <when value="range">
3022 <param name="min" type="text" label="From"/>
3023 <param name="max" type="text" label="To"/>
3024 </when>
3025 </conditional>
3026 </repeat>
3027 </when>
3028
3029 <when value="enzymeportal">
3030 <param name="fields" type="select" label="Fields to extract" multiple="true">
3031 <option value="CHEBI" selected="true">CHEBI</option>
3032 <option value="CHEMBL" selected="true">CHEMBL</option>
3033 <option value="INTENZ" selected="true">INTENZ</option>
3034 <option value="OMIM" selected="true">OMIM</option>
3035 <option value="REACTOME" selected="true">REACTOME</option>
3036 <option value="TAXONOMY" selected="true">TAXONOMY</option>
3037 <option value="UNIPROTKB" selected="true">UNIPROTKB</option>
3038 <option value="acc" selected="true">acc</option>
3039 <option value="common_name" selected="true">common_name</option>
3040 <option value="description" selected="true">description</option>
3041 <option value="domain_source" selected="true">domain_source</option>
3042 <option value="id" selected="true">id</option>
3043 <option value="name" selected="true">name</option>
3044 <option value="scientific_name" selected="true">scientific_name</option>
3045 <option value="status" selected="true">status</option>
3046 <validator type="no_options" message="Please select at least one field" />
3047 </param>
3048 <repeat name="queries" title="Add a query">
3049 <param name="combination_operation" type="select" label="Combination operation" >
3050 <option value="AND">AND</option>
3051 <option value="OR">OR</option>
3052 <option value="NOT">NOT</option>
3053 </param>
3054 <param name="query_field" type="select" label="Fields" >
3055 <option value="CHEBI">CHEBI</option>
3056 <option value="CHEMBL">CHEMBL</option>
3057 <option value="INTENZ">INTENZ</option>
3058 <option value="OMIM">OMIM</option>
3059 <option value="REACTOME">REACTOME</option>
3060 <option value="TAXONOMY">TAXONOMY</option>
3061 <option value="UNIPROTKB">UNIPROTKB</option>
3062 <option value="acc">acc</option>
3063 <option value="common_name">common_name</option>
3064 <option value="compound_name">compound_name</option>
3065 <option value="compound_type">compound_type</option>
3066 <option value="description">description</option>
3067 <option value="disease_name">disease_name</option>
3068 <option value="domain_source">domain_source</option>
3069 <option value="gene_name">gene_name</option>
3070 <option value="id">id</option>
3071 <option value="name">name</option>
3072 <option value="scientific_name">scientific_name</option>
3073 <option value="status">status</option>
3074 <option value="synonym">synonym</option>
3075 </param>
3076 <conditional name="comp_operation">
3077 <param name="operation" type="select" label="Comparison operation" >
3078 <option value="equal">equal</option>
3079 <option value="not">not</option>
3080 <option value="range">range</option>
3081 </param>
3082 <when value="equal">
3083 <param name="query_text" type="text" label="Searched term"/>
3084 </when>
3085 <when value="not">
3086 <param name="query_text" type="text" label="Searched term"/>
3087 <param name="not_query_text" type="text" label="Limiting term"/>
3088 </when>
3089 <when value="range">
3090 <param name="min" type="text" label="From"/>
3091 <param name="max" type="text" label="To"/>
3092 </when>
3093 </conditional>
3094 </repeat>
3095 </when>
3096
3097 <when value="enzymeportal_enzymes">
3098 <param name="fields" type="select" label="Fields to extract" multiple="true">
3099 <option value="CHEBI" selected="true">CHEBI</option>
3100 <option value="CHEMBL" selected="true">CHEMBL</option>
3101 <option value="INTENZ" selected="true">INTENZ</option>
3102 <option value="OMIM" selected="true">OMIM</option>
3103 <option value="REACTOME" selected="true">REACTOME</option>
3104 <option value="TAXONOMY" selected="true">TAXONOMY</option>
3105 <option value="UNIPROTKB" selected="true">UNIPROTKB</option>
3106 <option value="common_name" selected="true">common_name</option>
3107 <option value="compound_name" selected="true">compound_name</option>
3108 <option value="compound_type" selected="true">compound_type</option>
3109 <option value="description" selected="true">description</option>
3110 <option value="disease_name" selected="true">disease_name</option>
3111 <option value="domain_source" selected="true">domain_source</option>
3112 <option value="enzyme_family" selected="true">enzyme_family</option>
3113 <option value="gene_name" selected="true">gene_name</option>
3114 <option value="id" selected="true">id</option>
3115 <option value="name" selected="true">name</option>
3116 <option value="protein_name" selected="true">protein_name</option>
3117 <option value="scientific_name" selected="true">scientific_name</option>
3118 <option value="synonym" selected="true">synonym</option>
3119 <option value="uniprot_name" selected="true">uniprot_name</option>
3120 <validator type="no_options" message="Please select at least one field" />
3121 </param>
3122 <repeat name="queries" title="Add a query">
3123 <param name="combination_operation" type="select" label="Combination operation" >
3124 <option value="AND">AND</option>
3125 <option value="OR">OR</option>
3126 <option value="NOT">NOT</option>
3127 </param>
3128 <param name="query_field" type="select" label="Fields" >
3129 <option value="CHEBI">CHEBI</option>
3130 <option value="CHEMBL">CHEMBL</option>
3131 <option value="INTENZ">INTENZ</option>
3132 <option value="OMIM">OMIM</option>
3133 <option value="REACTOME">REACTOME</option>
3134 <option value="TAXONOMY">TAXONOMY</option>
3135 <option value="UNIPROTKB">UNIPROTKB</option>
3136 <option value="common_name">common_name</option>
3137 <option value="compound_name">compound_name</option>
3138 <option value="compound_type">compound_type</option>
3139 <option value="description">description</option>
3140 <option value="disease_name">disease_name</option>
3141 <option value="domain_source">domain_source</option>
3142 <option value="enzyme_family">enzyme_family</option>
3143 <option value="gene_name">gene_name</option>
3144 <option value="id">id</option>
3145 <option value="name">name</option>
3146 <option value="protein_name">protein_name</option>
3147 <option value="scientific_name">scientific_name</option>
3148 <option value="synonym">synonym</option>
3149 <option value="uniprot_name">uniprot_name</option>
3150 </param>
3151 <conditional name="comp_operation">
3152 <param name="operation" type="select" label="Comparison operation" >
3153 <option value="equal">equal</option>
3154 <option value="not">not</option>
3155 <option value="range">range</option>
3156 </param>
3157 <when value="equal">
3158 <param name="query_text" type="text" label="Searched term"/>
3159 </when>
3160 <when value="not">
3161 <param name="query_text" type="text" label="Searched term"/>
3162 <param name="not_query_text" type="text" label="Limiting term"/>
3163 </when>
3164 <when value="range">
3165 <param name="min" type="text" label="From"/>
3166 <param name="max" type="text" label="To"/>
3167 </when>
3168 </conditional>
3169 </repeat>
3170 </when>
3171
3172 <when value="atlas-experiments">
3173 <param name="fields" type="select" label="Fields to extract" multiple="true">
3174 <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option>
3175 <option value="ENSEMBL" selected="true">ENSEMBL</option>
3176 <option value="PUBMED" selected="true">PUBMED</option>
3177 <option value="TAXONOMY" selected="true">TAXONOMY</option>
3178 <option value="data_protocol" selected="true">data_protocol</option>
3179 <option value="dataset_file" selected="true">dataset_file</option>
3180 <option value="description" selected="true">description</option>
3181 <option value="disease" selected="true">disease</option>
3182 <option value="domain_source" selected="true">domain_source</option>
3183 <option value="full_dataset_link" selected="true">full_dataset_link</option>
3184 <option value="id" selected="true">id</option>
3185 <option value="name" selected="true">name</option>
3186 <option value="omics_type" selected="true">omics_type</option>
3187 <option value="publication_date" selected="true">publication_date</option>
3188 <option value="sample_protocol" selected="true">sample_protocol</option>
3189 <validator type="no_options" message="Please select at least one field" />
3190 </param>
3191 <repeat name="queries" title="Add a query">
3192 <param name="combination_operation" type="select" label="Combination operation" >
3193 <option value="AND">AND</option>
3194 <option value="OR">OR</option>
3195 <option value="NOT">NOT</option>
3196 </param>
3197 <param name="query_field" type="select" label="Fields" >
3198 <option value="ARRAYEXPRESS">ARRAYEXPRESS</option>
3199 <option value="ENSEMBL">ENSEMBL</option>
3200 <option value="PUBMED">PUBMED</option>
3201 <option value="TAXONOMY">TAXONOMY</option>
3202 <option value="acc">acc</option>
3203 <option value="age">age</option>
3204 <option value="biopsy_site">biopsy_site</option>
3205 <option value="biotic_plant_treatment">biotic_plant_treatment</option>
3206 <option value="block">block</option>
3207 <option value="breed">breed</option>
3208 <option value="cell_cycle_stage">cell_cycle_stage</option>
3209 <option value="cell_line">cell_line</option>
3210 <option value="cell_type">cell_type</option>
3211 <option value="cellular_component">cellular_component</option>
3212 <option value="chromosomal_aberration">chromosomal_aberration</option>
3213 <option value="clinical_history">clinical_history</option>
3214 <option value="clinical_information">clinical_information</option>
3215 <option value="clinical_treatment">clinical_treatment</option>
3216 <option value="compound">compound</option>
3217 <option value="creation_date">creation_date</option>
3218 <option value="cultivar">cultivar</option>
3219 <option value="data_protocol">data_protocol</option>
3220 <option value="data_synonyms">data_synonyms</option>
3221 <option value="description">description</option>
3222 <option value="description_synonyms">description_synonyms</option>
3223 <option value="developmental_stage">developmental_stage</option>
3224 <option value="diet">diet</option>
3225 <option value="disease">disease</option>
3226 <option value="disease_staging">disease_staging</option>
3227 <option value="domain_source">domain_source</option>
3228 <option value="ecotype">ecotype</option>
3229 <option value="environmental_history">environmental_history</option>
3230 <option value="environmental_stress">environmental_stress</option>
3231 <option value="estrogen_receptor_status">estrogen_receptor_status</option>
3232 <option value="family_relationship">family_relationship</option>
3233 <option value="fraction">fraction</option>
3234 <option value="full_dataset_link">full_dataset_link</option>
3235 <option value="generation">generation</option>
3236 <option value="genetic_modification">genetic_modification</option>
3237 <option value="genotype">genotype</option>
3238 <option value="gestational_age">gestational_age</option>
3239 <option value="growth_condition">growth_condition</option>
3240 <option value="histology">histology</option>
3241 <option value="id">id</option>
3242 <option value="individual">individual</option>
3243 <option value="infect">infect</option>
3244 <option value="injury">injury</option>
3245 <option value="irradiate">irradiate</option>
3246 <option value="last_modification_date">last_modification_date</option>
3247 <option value="light">light</option>
3248 <option value="material_type">material_type</option>
3249 <option value="name">name</option>
3250 <option value="name_synonyms">name_synonyms</option>
3251 <option value="omics_type">omics_type</option>
3252 <option value="organism_part">organism_part</option>
3253 <option value="passage">passage</option>
3254 <option value="phenotype">phenotype</option>
3255 <option value="physical_activity">physical_activity</option>
3256 <option value="ploidy">ploidy</option>
3257 <option value="population">population</option>
3258 <option value="pregnancy">pregnancy</option>
3259 <option value="protocol">protocol</option>
3260 <option value="publication_date">publication_date</option>
3261 <option value="repository">repository</option>
3262 <option value="rna">rna</option>
3263 <option value="rna_interference">rna_interference</option>
3264 <option value="sample_protocol">sample_protocol</option>
3265 <option value="sample_synonyms">sample_synonyms</option>
3266 <option value="sampling_site">sampling_site</option>
3267 <option value="sampling_time">sampling_time</option>
3268 <option value="sampling_time_point">sampling_time_point</option>
3269 <option value="sex">sex</option>
3270 <option value="software">software</option>
3271 <option value="specimen_with_known_storage_state">specimen_with_known_storage_state</option>
3272 <option value="stimulus">stimulus</option>
3273 <option value="strain">strain</option>
3274 <option value="survival_time">survival_time</option>
3275 <option value="temperature">temperature</option>
3276 <option value="time">time</option>
3277 <option value="treatment">treatment</option>
3278 <option value="tumor_grading">tumor_grading</option>
3279 <option value="tumor_stage">tumor_stage</option>
3280 </param>
3281 <conditional name="comp_operation">
3282 <param name="operation" type="select" label="Comparison operation" >
3283 <option value="equal">equal</option>
3284 <option value="not">not</option>
3285 <option value="range">range</option>
3286 </param>
3287 <when value="equal">
3288 <param name="query_text" type="text" label="Searched term"/>
3289 </when>
3290 <when value="not">
3291 <param name="query_text" type="text" label="Searched term"/>
3292 <param name="not_query_text" type="text" label="Limiting term"/>
3293 </when>
3294 <when value="range">
3295 <param name="min" type="text" label="From"/>
3296 <param name="max" type="text" label="To"/>
3297 </when>
3298 </conditional>
3299 </repeat>
3300 </when>
3301
3302 <when value="gnps">
3303 <param name="fields" type="select" label="Fields to extract" multiple="true">
3304 <option value="PUBMED" selected="true">PUBMED</option>
3305 <option value="TAXONOMY" selected="true">TAXONOMY</option>
3306 <option value="dataset_file" selected="true">dataset_file</option>
3307 <option value="description" selected="true">description</option>
3308 <option value="domain_source" selected="true">domain_source</option>
3309 <option value="full_dataset_link" selected="true">full_dataset_link</option>
3310 <option value="id" selected="true">id</option>
3311 <option value="instrument_platform" selected="true">instrument_platform</option>
3312 <option value="modification" selected="true">modification</option>
3313 <option value="name" selected="true">name</option>
3314 <option value="omics_type" selected="true">omics_type</option>
3315 <option value="species" selected="true">species</option>
3316 <option value="submission_date" selected="true">submission_date</option>
3317 <option value="technology_type" selected="true">technology_type</option>
3318 <validator type="no_options" message="Please select at least one field" />
3319 </param>
3320 <repeat name="queries" title="Add a query">
3321 <param name="combination_operation" type="select" label="Combination operation" >
3322 <option value="AND">AND</option>
3323 <option value="OR">OR</option>
3324 <option value="NOT">NOT</option>
3325 </param>
3326 <param name="query_field" type="select" label="Fields" >
3327 <option value="PUBMED">PUBMED</option>
3328 <option value="TAXONOMY">TAXONOMY</option>
3329 <option value="acc">acc</option>
3330 <option value="curator_keywords">curator_keywords</option>
3331 <option value="description">description</option>
3332 <option value="description_synonyms">description_synonyms</option>
3333 <option value="domain_source">domain_source</option>
3334 <option value="full_dataset_link">full_dataset_link</option>
3335 <option value="id">id</option>
3336 <option value="instrument_platform">instrument_platform</option>
3337 <option value="modification">modification</option>
3338 <option value="name">name</option>
3339 <option value="name_synonyms">name_synonyms</option>
3340 <option value="omics_type">omics_type</option>
3341 <option value="pubmed_abstract">pubmed_abstract</option>
3342 <option value="pubmed_abstract_synonyms">pubmed_abstract_synonyms</option>
3343 <option value="pubmed_authors">pubmed_authors</option>
3344 <option value="pubmed_title">pubmed_title</option>
3345 <option value="pubmed_title_synonyms">pubmed_title_synonyms</option>
3346 <option value="repository">repository</option>
3347 <option value="species">species</option>
3348 <option value="submission_date">submission_date</option>
3349 <option value="submitter">submitter</option>
3350 <option value="technology_type">technology_type</option>
3351 </param>
3352 <conditional name="comp_operation">
3353 <param name="operation" type="select" label="Comparison operation" >
3354 <option value="equal">equal</option>
3355 <option value="not">not</option>
3356 <option value="range">range</option>
3357 </param>
3358 <when value="equal">
3359 <param name="query_text" type="text" label="Searched term"/>
3360 </when>
3361 <when value="not">
3362 <param name="query_text" type="text" label="Searched term"/>
3363 <param name="not_query_text" type="text" label="Limiting term"/>
3364 </when>
3365 <when value="range">
3366 <param name="min" type="text" label="From"/>
3367 <param name="max" type="text" label="To"/>
3368 </when>
3369 </conditional>
3370 </repeat>
3371 </when>
3372
3373 <when value="go">
3374 <param name="fields" type="select" label="Fields to extract" multiple="true">
3375 <option value="ARACYC" selected="true">ARACYC</option>
3376 <option value="BIOCYC" selected="true">BIOCYC</option>
3377 <option value="BRENDA" selected="true">BRENDA</option>
3378 <option value="CHEBI" selected="true">CHEBI</option>
3379 <option value="CORUM" selected="true">CORUM</option>
3380 <option value="DICTYBASE_REF" selected="true">DICTYBASE_REF</option>
3381 <option value="DOI" selected="true">DOI</option>
3382 <option value="EC" selected="true">EC</option>
3383 <option value="EMBL" selected="true">EMBL</option>
3384 <option value="FB" selected="true">FB</option>
3385 <option value="FMA" selected="true">FMA</option>
3386 <option value="GO" selected="true">GO</option>
3387 <option value="GOA" selected="true">GOA</option>
3388 <option value="GO_REF" selected="true">GO_REF</option>
3389 <option value="HTTP" selected="true">HTTP</option>
3390 <option value="HTTPS" selected="true">HTTPS</option>
3391 <option value="INTACT" selected="true">INTACT</option>
3392 <option value="INTERPRO" selected="true">INTERPRO</option>
3393 <option value="ISBN" selected="true">ISBN</option>
3394 <option value="IUPHAR_GPCR" selected="true">IUPHAR_GPCR</option>
3395 <option value="IUPHAR_RECEPTOR" selected="true">IUPHAR_RECEPTOR</option>
3396 <option value="JSTOR" selected="true">JSTOR</option>
3397 <option value="KEGG_PATHWAY" selected="true">KEGG_PATHWAY</option>
3398 <option value="LIGAND" selected="true">LIGAND</option>
3399 <option value="MA" selected="true">MA</option>
3400 <option value="MEDLINE" selected="true">MEDLINE</option>
3401 <option value="MEROPS" selected="true">MEROPS</option>
3402 <option value="MEROPS_FAM" selected="true">MEROPS_FAM</option>
3403 <option value="MESH" selected="true">MESH</option>
3404 <option value="METACYC" selected="true">METACYC</option>
3405 <option value="NIF_SUBCELLULAR" selected="true">NIF_SUBCELLULAR</option>
3406 <option value="OMIM" selected="true">OMIM</option>
3407 <option value="PDB" selected="true">PDB</option>
3408 <option value="PFAM" selected="true">PFAM</option>
3409 <option value="PMID" selected="true">PMID</option>
3410 <option value="PO" selected="true">PO</option>
3411 <option value="PR" selected="true">PR</option>
3412 <option value="PROSITE" selected="true">PROSITE</option>
3413 <option value="PSI-MOD" selected="true">PSI-MOD</option>
3414 <option value="PUBCHEM" selected="true">PUBCHEM</option>
3415 <option value="PUBCHEM_COMPOUND" selected="true">PUBCHEM_COMPOUND</option>
3416 <option value="PUBMED" selected="true">PUBMED</option>
3417 <option value="REACTOME" selected="true">REACTOME</option>
3418 <option value="RESID" selected="true">RESID</option>
3419 <option value="RHEA" selected="true">RHEA</option>
3420 <option value="RNAMODS" selected="true">RNAMODS</option>
3421 <option value="SABIO-RK" selected="true">SABIO-RK</option>
3422 <option value="SO" selected="true">SO</option>
3423 <option value="TC" selected="true">TC</option>
3424 <option value="TIGR_TIGRFAMS" selected="true">TIGR_TIGRFAMS</option>
3425 <option value="UBERON" selected="true">UBERON</option>
3426 <option value="UM-BBD_ENZYMEID" selected="true">UM-BBD_ENZYMEID</option>
3427 <option value="UM-BBD_PATHWAYID" selected="true">UM-BBD_PATHWAYID</option>
3428 <option value="UM-BBD_REACTIONID" selected="true">UM-BBD_REACTIONID</option>
3429 <option value="UM-BBD_RULEID" selected="true">UM-BBD_RULEID</option>
3430 <option value="UNIPATHWAY" selected="true">UNIPATHWAY</option>
3431 <option value="UNIPROT" selected="true">UNIPROT</option>
3432 <option value="UNIPROTKB" selected="true">UNIPROTKB</option>
3433 <option value="WBBT" selected="true">WBBT</option>
3434 <option value="WB_REF" selected="true">WB_REF</option>
3435 <option value="WIKI" selected="true">WIKI</option>
3436 <option value="WIKIPEDIA" selected="true">WIKIPEDIA</option>
3437 <option value="ZFIN" selected="true">ZFIN</option>
3438 <option value="alt_id" selected="true">alt_id</option>
3439 <option value="comment" selected="true">comment</option>
3440 <option value="consider" selected="true">consider</option>
3441 <option value="description" selected="true">description</option>
3442 <option value="domain_source" selected="true">domain_source</option>
3443 <option value="id" selected="true">id</option>
3444 <option value="is_a" selected="true">is_a</option>
3445 <option value="is_obsolete" selected="true">is_obsolete</option>
3446 <option value="is_root" selected="true">is_root</option>
3447 <option value="name" selected="true">name</option>
3448 <option value="namespace" selected="true">namespace</option>
3449 <option value="negatively_regulates" selected="true">negatively_regulates</option>
3450 <option value="part_of" selected="true">part_of</option>
3451 <option value="positively_regulates" selected="true">positively_regulates</option>
3452 <option value="regulates" selected="true">regulates</option>
3453 <option value="replaced_by" selected="true">replaced_by</option>
3454 <option value="subset" selected="true">subset</option>
3455 <option value="synonym" selected="true">synonym</option>
3456 <validator type="no_options" message="Please select at least one field" />
3457 </param>
3458 <repeat name="queries" title="Add a query">
3459 <param name="combination_operation" type="select" label="Combination operation" >
3460 <option value="AND">AND</option>
3461 <option value="OR">OR</option>
3462 <option value="NOT">NOT</option>
3463 </param>
3464 <param name="query_field" type="select" label="Fields" >
3465 <option value="ARACYC">ARACYC</option>
3466 <option value="BIOCYC">BIOCYC</option>
3467 <option value="BRENDA">BRENDA</option>
3468 <option value="CHEBI">CHEBI</option>
3469 <option value="CL">CL</option>
3470 <option value="CORUM">CORUM</option>
3471 <option value="DDANAT">DDANAT</option>
3472 <option value="DICTYBASE_REF">DICTYBASE_REF</option>
3473 <option value="DOI">DOI</option>
3474 <option value="EC">EC</option>
3475 <option value="EMBL">EMBL</option>
3476 <option value="FB">FB</option>
3477 <option value="FBBT">FBBT</option>
3478 <option value="FMA">FMA</option>
3479 <option value="GO">GO</option>
3480 <option value="GOA">GOA</option>
3481 <option value="GOC">GOC</option>
3482 <option value="GOCL">GOCL</option>
3483 <option value="GOV">GOV</option>
3484 <option value="GO_REF">GO_REF</option>
3485 <option value="GPC">GPC</option>
3486 <option value="HTTP">HTTP</option>
3487 <option value="HTTPS">HTTPS</option>
3488 <option value="IMG">IMG</option>
3489 <option value="INTACT">INTACT</option>
3490 <option value="INTERPRO">INTERPRO</option>
3491 <option value="ISBN">ISBN</option>
3492 <option value="ISSN">ISSN</option>
3493 <option value="IUPHAR_GPCR">IUPHAR_GPCR</option>
3494 <option value="IUPHAR_RECEPTOR">IUPHAR_RECEPTOR</option>
3495 <option value="JSTOR">JSTOR</option>
3496 <option value="KEGG">KEGG</option>
3497 <option value="KEGG_PATHWAY">KEGG_PATHWAY</option>
3498 <option value="LIGAND">LIGAND</option>
3499 <option value="MA">MA</option>
3500 <option value="MEDLINE">MEDLINE</option>
3501 <option value="MEROPS">MEROPS</option>
3502 <option value="MEROPS_FAM">MEROPS_FAM</option>
3503 <option value="MESH">MESH</option>
3504 <option value="METACYC">METACYC</option>
3505 <option value="MITRE">MITRE</option>
3506 <option value="MP">MP</option>
3507 <option value="MSH">MSH</option>
3508 <option value="NIF_SUBCELLULAR">NIF_SUBCELLULAR</option>
3509 <option value="OMIM">OMIM</option>
3510 <option value="PATO">PATO</option>
3511 <option value="PDB">PDB</option>
3512 <option value="PFAM">PFAM</option>
3513 <option value="PHI">PHI</option>
3514 <option value="PMID">PMID</option>
3515 <option value="PMIG">PMIG</option>
3516 <option value="PO">PO</option>
3517 <option value="POC">POC</option>
3518 <option value="PO_REF">PO_REF</option>
3519 <option value="PR">PR</option>
3520 <option value="PROSITE">PROSITE</option>
3521 <option value="PSI-MOD">PSI-MOD</option>
3522 <option value="PUBCHEM">PUBCHEM</option>
3523 <option value="PUBCHEM_COMPOUND">PUBCHEM_COMPOUND</option>
3524 <option value="PUBMED">PUBMED</option>
3525 <option value="REACTOME">REACTOME</option>
3526 <option value="RESID">RESID</option>
3527 <option value="RHEA">RHEA</option>
3528 <option value="RNAMODS">RNAMODS</option>
3529 <option value="SABIO-RK">SABIO-RK</option>
3530 <option value="SO">SO</option>
3531 <option value="SP">SP</option>
3532 <option value="TC">TC</option>
3533 <option value="TIGR_TIGRFAMS">TIGR_TIGRFAMS</option>
3534 <option value="UBERON">UBERON</option>
3535 <option value="UM-BBD_ENZYMEID">UM-BBD_ENZYMEID</option>
3536 <option value="UM-BBD_PATHWAYID">UM-BBD_PATHWAYID</option>
3537 <option value="UM-BBD_REACTIONID">UM-BBD_REACTIONID</option>
3538 <option value="UM-BBD_RULEID">UM-BBD_RULEID</option>
3539 <option value="UNIPATHWAY">UNIPATHWAY</option>
3540 <option value="UNIPROT">UNIPROT</option>
3541 <option value="UNIPROTKB">UNIPROTKB</option>
3542 <option value="UNIPROTKB-KW">UNIPROTKB-KW</option>
3543 <option value="URL">URL</option>
3544 <option value="VZ">VZ</option>
3545 <option value="WBBT">WBBT</option>
3546 <option value="WB_REF">WB_REF</option>
3547 <option value="WIKI">WIKI</option>
3548 <option value="WIKIPEDIA">WIKIPEDIA</option>
3549 <option value="XAO">XAO</option>
3550 <option value="ZFA">ZFA</option>
3551 <option value="ZFIN">ZFIN</option>
3552 <option value="alt_id">alt_id</option>
3553 <option value="comment">comment</option>
3554 <option value="consider">consider</option>
3555 <option value="description">description</option>
3556 <option value="domain_source">domain_source</option>
3557 <option value="id">id</option>
3558 <option value="is_a">is_a</option>
3559 <option value="is_obsolete">is_obsolete</option>
3560 <option value="is_root">is_root</option>
3561 <option value="name">name</option>
3562 <option value="namespace">namespace</option>
3563 <option value="negatively_regulates">negatively_regulates</option>
3564 <option value="part_of">part_of</option>
3565 <option value="positively_regulates">positively_regulates</option>
3566 <option value="regulates">regulates</option>
3567 <option value="replaced_by">replaced_by</option>
3568 <option value="subset">subset</option>
3569 <option value="synonym">synonym</option>
3570 </param>
3571 <conditional name="comp_operation">
3572 <param name="operation" type="select" label="Comparison operation" >
3573 <option value="equal">equal</option>
3574 <option value="not">not</option>
3575 <option value="range">range</option>
3576 </param>
3577 <when value="equal">
3578 <param name="query_text" type="text" label="Searched term"/>
3579 </when>
3580 <when value="not">
3581 <param name="query_text" type="text" label="Searched term"/>
3582 <param name="not_query_text" type="text" label="Limiting term"/>
3583 </when>
3584 <when value="range">
3585 <param name="min" type="text" label="From"/>
3586 <param name="max" type="text" label="To"/>
3587 </when>
3588 </conditional>
3589 </repeat>
3590 </when>
3591
3592 <when value="gpcrdb">
3593 <param name="fields" type="select" label="Fields to extract" multiple="true">
3594 <option value="SWISSPROT" selected="true">SWISSPROT</option>
3595 <option value="TAXONOMY" selected="true">TAXONOMY</option>
3596 <option value="TREMBL" selected="true">TREMBL</option>
3597 <option value="description" selected="true">description</option>
3598 <option value="domain_source" selected="true">domain_source</option>
3599 <option value="gpcr-family" selected="true">gpcr-family</option>
3600 <option value="id" selected="true">id</option>
3601 <option value="name" selected="true">name</option>
3602 <validator type="no_options" message="Please select at least one field" />
3603 </param>
3604 <repeat name="queries" title="Add a query">
3605 <param name="combination_operation" type="select" label="Combination operation" >
3606 <option value="AND">AND</option>
3607 <option value="OR">OR</option>
3608 <option value="NOT">NOT</option>
3609 </param>
3610 <param name="query_field" type="select" label="Fields" >
3611 <option value="SWISSPROT">SWISSPROT</option>
3612 <option value="TAXONOMY">TAXONOMY</option>
3613 <option value="TREMBL">TREMBL</option>
3614 <option value="description">description</option>
3615 <option value="domain_source">domain_source</option>
3616 <option value="gpcr-family">gpcr-family</option>
3617 <option value="id">id</option>
3618 <option value="name">name</option>
3619 </param>
3620 <conditional name="comp_operation">
3621 <param name="operation" type="select" label="Comparison operation" >
3622 <option value="equal">equal</option>
3623 <option value="not">not</option>
3624 <option value="range">range</option>
3625 </param>
3626 <when value="equal">
3627 <param name="query_text" type="text" label="Searched term"/>
3628 </when>
3629 <when value="not">
3630 <param name="query_text" type="text" label="Searched term"/>
3631 <param name="not_query_text" type="text" label="Limiting term"/>
3632 </when>
3633 <when value="range">
3634 <param name="min" type="text" label="From"/>
3635 <param name="max" type="text" label="To"/>
3636 </when>
3637 </conditional>
3638 </repeat>
3639 </when>
3640
3641 <when value="gpmdb">
3642 <param name="fields" type="select" label="Fields to extract" multiple="true">
3643 <option value="ENSEMBL" selected="true">ENSEMBL</option>
3644 <option value="MASSIVE" selected="true">MASSIVE</option>
3645 <option value="PRIDE" selected="true">PRIDE</option>
3646 <option value="PUBMED" selected="true">PUBMED</option>
3647 <option value="description" selected="true">description</option>
3648 <option value="disease" selected="true">disease</option>
3649 <option value="domain_source" selected="true">domain_source</option>
3650 <option value="id" selected="true">id</option>
3651 <option value="instrument_platform" selected="true">instrument_platform</option>
3652 <option value="name" selected="true">name</option>
3653 <option value="omics_type" selected="true">omics_type</option>
3654 <option value="publication" selected="true">publication</option>
3655 <option value="species" selected="true">species</option>
3656 <option value="submission_date" selected="true">submission_date</option>
3657 <validator type="no_options" message="Please select at least one field" />
3658 </param>
3659 <repeat name="queries" title="Add a query">
3660 <param name="combination_operation" type="select" label="Combination operation" >
3661 <option value="AND">AND</option>
3662 <option value="OR">OR</option>
3663 <option value="NOT">NOT</option>
3664 </param>
3665 <param name="query_field" type="select" label="Fields" >
3666 <option value="ENSEMBL">ENSEMBL</option>
3667 <option value="MASSIVE">MASSIVE</option>
3668 <option value="PRIDE">PRIDE</option>
3669 <option value="PUBMED">PUBMED</option>
3670 <option value="brenda_tissue">brenda_tissue</option>
3671 <option value="cell_type">cell_type</option>
3672 <option value="description">description</option>
3673 <option value="description_synonyms">description_synonyms</option>
3674 <option value="disease">disease</option>
3675 <option value="domain_source">domain_source</option>
3676 <option value="id">id</option>
3677 <option value="instrument_platform">instrument_platform</option>
3678 <option value="model">model</option>
3679 <option value="name">name</option>
3680 <option value="name_synonyms">name_synonyms</option>
3681 <option value="omics_type">omics_type</option>
3682 <option value="publication">publication</option>
3683 <option value="pubmed_abstract">pubmed_abstract</option>
3684 <option value="pubmed_authors">pubmed_authors</option>
3685 <option value="pubmed_title">pubmed_title</option>
3686 <option value="repository">repository</option>
3687 <option value="species">species</option>
3688 <option value="submission_date">submission_date</option>
3689 <option value="submitter">submitter</option>
3690 <option value="submitter_affiliation">submitter_affiliation</option>
3691 <option value="submitter_mail">submitter_mail</option>
3692 </param>
3693 <conditional name="comp_operation">
3694 <param name="operation" type="select" label="Comparison operation" >
3695 <option value="equal">equal</option>
3696 <option value="not">not</option>
3697 <option value="range">range</option>
3698 </param>
3699 <when value="equal">
3700 <param name="query_text" type="text" label="Searched term"/>
3701 </when>
3702 <when value="not">
3703 <param name="query_text" type="text" label="Searched term"/>
3704 <param name="not_query_text" type="text" label="Limiting term"/>
3705 </when>
3706 <when value="range">
3707 <param name="min" type="text" label="From"/>
3708 <param name="max" type="text" label="To"/>
3709 </when>
3710 </conditional>
3711 </repeat>
3712 </when>
3713
3714 <when value="hgnc">
3715 <param name="fields" type="select" label="Fields to extract" multiple="true">
3716 <option value="CCDS" selected="true">CCDS</option>
3717 <option value="EMBL" selected="true">EMBL</option>
3718 <option value="ENSEMBL_GENE" selected="true">ENSEMBL_GENE</option>
3719 <option value="INTENZ" selected="true">INTENZ</option>
3720 <option value="MEDLINE" selected="true">MEDLINE</option>
3721 <option value="MGI" selected="true">MGI</option>
3722 <option value="NCBI" selected="true">NCBI</option>
3723 <option value="OMIM" selected="true">OMIM</option>
3724 <option value="REFSEQ" selected="true">REFSEQ</option>
3725 <option value="RGD" selected="true">RGD</option>
3726 <option value="TAXONOMY" selected="true">TAXONOMY</option>
3727 <option value="UCSC" selected="true">UCSC</option>
3728 <option value="UNIPROT" selected="true">UNIPROT</option>
3729 <option value="VEGA" selected="true">VEGA</option>
3730 <option value="domain_source" selected="true">domain_source</option>
3731 <option value="gd_aliases" selected="true">gd_aliases</option>
3732 <option value="gd_app_name" selected="true">gd_app_name</option>
3733 <option value="gd_app_sym" selected="true">gd_app_sym</option>
3734 <option value="gd_gene_fam_name" selected="true">gd_gene_fam_name</option>
3735 <option value="gd_locus_type" selected="true">gd_locus_type</option>
3736 <option value="gd_prev_sym" selected="true">gd_prev_sym</option>
3737 <option value="gd_pub_chrom_map" selected="true">gd_pub_chrom_map</option>
3738 <option value="gd_status" selected="true">gd_status</option>
3739 <option value="id" selected="true">id</option>
3740 <option value="id_without_prefix" selected="true">id_without_prefix</option>
3741 <validator type="no_options" message="Please select at least one field" />
3742 </param>
3743 <repeat name="queries" title="Add a query">
3744 <param name="combination_operation" type="select" label="Combination operation" >
3745 <option value="AND">AND</option>
3746 <option value="OR">OR</option>
3747 <option value="NOT">NOT</option>
3748 </param>
3749 <param name="query_field" type="select" label="Fields" >
3750 <option value="CCDS">CCDS</option>
3751 <option value="EMBL">EMBL</option>
3752 <option value="ENSEMBL_GENE">ENSEMBL_GENE</option>
3753 <option value="INTENZ">INTENZ</option>
3754 <option value="MEDLINE">MEDLINE</option>
3755 <option value="MGI">MGI</option>
3756 <option value="NCBI">NCBI</option>
3757 <option value="OMIM">OMIM</option>
3758 <option value="REFSEQ">REFSEQ</option>
3759 <option value="RGD">RGD</option>
3760 <option value="TAXONOMY">TAXONOMY</option>
3761 <option value="UCSC">UCSC</option>
3762 <option value="UNIPROT">UNIPROT</option>
3763 <option value="VEGA">VEGA</option>
3764 <option value="domain_source">domain_source</option>
3765 <option value="gd_aliases">gd_aliases</option>
3766 <option value="gd_app_name">gd_app_name</option>
3767 <option value="gd_app_sym">gd_app_sym</option>
3768 <option value="gd_gene_fam_name">gd_gene_fam_name</option>
3769 <option value="gd_locus_type">gd_locus_type</option>
3770 <option value="gd_prev_sym">gd_prev_sym</option>
3771 <option value="gd_pub_chrom_map">gd_pub_chrom_map</option>
3772 <option value="gd_status">gd_status</option>
3773 <option value="id">id</option>
3774 <option value="id_without_prefix">id_without_prefix</option>
3775 </param>
3776 <conditional name="comp_operation">
3777 <param name="operation" type="select" label="Comparison operation" >
3778 <option value="equal">equal</option>
3779 <option value="not">not</option>
3780 <option value="range">range</option>
3781 </param>
3782 <when value="equal">
3783 <param name="query_text" type="text" label="Searched term"/>
3784 </when>
3785 <when value="not">
3786 <param name="query_text" type="text" label="Searched term"/>
3787 <param name="not_query_text" type="text" label="Limiting term"/>
3788 </when>
3789 <when value="range">
3790 <param name="min" type="text" label="From"/>
3791 <param name="max" type="text" label="To"/>
3792 </when>
3793 </conditional>
3794 </repeat>
3795 </when>
3796
3797 <when value="human_diseases">
3798 <param name="fields" type="select" label="Fields to extract" multiple="true">
3799 <option value="KW" selected="true">KW</option>
3800 <option value="MEDGEN" selected="true">MEDGEN</option>
3801 <option value="MESH" selected="true">MESH</option>
3802 <option value="MIM" selected="true">MIM</option>
3803 <option value="description" selected="true">description</option>
3804 <option value="domain_source" selected="true">domain_source</option>
3805 <option value="id" selected="true">id</option>
3806 <option value="name" selected="true">name</option>
3807 <validator type="no_options" message="Please select at least one field" />
3808 </param>
3809 <repeat name="queries" title="Add a query">
3810 <param name="combination_operation" type="select" label="Combination operation" >
3811 <option value="AND">AND</option>
3812 <option value="OR">OR</option>
3813 <option value="NOT">NOT</option>
3814 </param>
3815 <param name="query_field" type="select" label="Fields" >
3816 <option value="KW">KW</option>
3817 <option value="MEDGEN">MEDGEN</option>
3818 <option value="MESH">MESH</option>
3819 <option value="MIM">MIM</option>
3820 <option value="acronym">acronym</option>
3821 <option value="description">description</option>
3822 <option value="domain_source">domain_source</option>
3823 <option value="id">id</option>
3824 <option value="keyword">keyword</option>
3825 <option value="name">name</option>
3826 <option value="synonym">synonym</option>
3827 </param>
3828 <conditional name="comp_operation">
3829 <param name="operation" type="select" label="Comparison operation" >
3830 <option value="equal">equal</option>
3831 <option value="not">not</option>
3832 <option value="range">range</option>
3833 </param>
3834 <when value="equal">
3835 <param name="query_text" type="text" label="Searched term"/>
3836 </when>
3837 <when value="not">
3838 <param name="query_text" type="text" label="Searched term"/>
3839 <param name="not_query_text" type="text" label="Limiting term"/>
3840 </when>
3841 <when value="range">
3842 <param name="min" type="text" label="From"/>
3843 <param name="max" type="text" label="To"/>
3844 </when>
3845 </conditional>
3846 </repeat>
3847 </when>
3848
3849 <when value="imgt-hla">
3850 <param name="fields" type="select" label="Fields to extract" multiple="true">
3851 <option value="EMBL-ENA" selected="true">EMBL-ENA</option>
3852 <option value="PUBMED" selected="true">PUBMED</option>
3853 <option value="description" selected="true">description</option>
3854 <option value="domain_source" selected="true">domain_source</option>
3855 <option value="id" selected="true">id</option>
3856 <option value="name" selected="true">name</option>
3857 <option value="organism" selected="true">organism</option>
3858 <validator type="no_options" message="Please select at least one field" />
3859 </param>
3860 <repeat name="queries" title="Add a query">
3861 <param name="combination_operation" type="select" label="Combination operation" >
3862 <option value="AND">AND</option>
3863 <option value="OR">OR</option>
3864 <option value="NOT">NOT</option>
3865 </param>
3866 <param name="query_field" type="select" label="Fields" >
3867 <option value="EMBL-ENA">EMBL-ENA</option>
3868 <option value="PUBMED">PUBMED</option>
3869 <option value="creation_date">creation_date</option>
3870 <option value="description">description</option>
3871 <option value="domain_source">domain_source</option>
3872 <option value="id">id</option>
3873 <option value="last_modification_date">last_modification_date</option>
3874 <option value="name">name</option>
3875 <option value="organism">organism</option>
3876 </param>
3877 <conditional name="comp_operation">
3878 <param name="operation" type="select" label="Comparison operation" >
3879 <option value="equal">equal</option>
3880 <option value="not">not</option>
3881 <option value="range">range</option>
3882 </param>
3883 <when value="equal">
3884 <param name="query_text" type="text" label="Searched term"/>
3885 </when>
3886 <when value="not">
3887 <param name="query_text" type="text" label="Searched term"/>
3888 <param name="not_query_text" type="text" label="Limiting term"/>
3889 </when>
3890 <when value="range">
3891 <param name="min" type="text" label="From"/>
3892 <param name="max" type="text" label="To"/>
3893 </when>
3894 </conditional>
3895 </repeat>
3896 </when>
3897
3898 <when value="ipd-kir">
3899 <param name="fields" type="select" label="Fields to extract" multiple="true">
3900 <option value="EMBL-ENA" selected="true">EMBL-ENA</option>
3901 <option value="PUBMED" selected="true">PUBMED</option>
3902 <option value="description" selected="true">description</option>
3903 <option value="domain_source" selected="true">domain_source</option>
3904 <option value="id" selected="true">id</option>
3905 <option value="name" selected="true">name</option>
3906 <option value="organism" selected="true">organism</option>
3907 <validator type="no_options" message="Please select at least one field" />
3908 </param>
3909 <repeat name="queries" title="Add a query">
3910 <param name="combination_operation" type="select" label="Combination operation" >
3911 <option value="AND">AND</option>
3912 <option value="OR">OR</option>
3913 <option value="NOT">NOT</option>
3914 </param>
3915 <param name="query_field" type="select" label="Fields" >
3916 <option value="EMBL-ENA">EMBL-ENA</option>
3917 <option value="PUBMED">PUBMED</option>
3918 <option value="creation_date">creation_date</option>
3919 <option value="description">description</option>
3920 <option value="domain_source">domain_source</option>
3921 <option value="id">id</option>
3922 <option value="last_modification_date">last_modification_date</option>
3923 <option value="name">name</option>
3924 <option value="organism">organism</option>
3925 </param>
3926 <conditional name="comp_operation">
3927 <param name="operation" type="select" label="Comparison operation" >
3928 <option value="equal">equal</option>
3929 <option value="not">not</option>
3930 <option value="range">range</option>
3931 </param>
3932 <when value="equal">
3933 <param name="query_text" type="text" label="Searched term"/>
3934 </when>
3935 <when value="not">
3936 <param name="query_text" type="text" label="Searched term"/>
3937 <param name="not_query_text" type="text" label="Limiting term"/>
3938 </when>
3939 <when value="range">
3940 <param name="min" type="text" label="From"/>
3941 <param name="max" type="text" label="To"/>
3942 </when>
3943 </conditional>
3944 </repeat>
3945 </when>
3946
3947 <when value="ipd-mhc">
3948 <param name="fields" type="select" label="Fields to extract" multiple="true">
3949 <option value="EMBL-ENA" selected="true">EMBL-ENA</option>
3950 <option value="PUBMED" selected="true">PUBMED</option>
3951 <option value="TAXONOMY" selected="true">TAXONOMY</option>
3952 <option value="description" selected="true">description</option>
3953 <option value="domain_source" selected="true">domain_source</option>
3954 <option value="id" selected="true">id</option>
3955 <option value="name" selected="true">name</option>
3956 <option value="organism" selected="true">organism</option>
3957 <validator type="no_options" message="Please select at least one field" />
3958 </param>
3959 <repeat name="queries" title="Add a query">
3960 <param name="combination_operation" type="select" label="Combination operation" >
3961 <option value="AND">AND</option>
3962 <option value="OR">OR</option>
3963 <option value="NOT">NOT</option>
3964 </param>
3965 <param name="query_field" type="select" label="Fields" >
3966 <option value="EMBL-ENA">EMBL-ENA</option>
3967 <option value="PUBMED">PUBMED</option>
3968 <option value="TAXONOMY">TAXONOMY</option>
3969 <option value="creation_date">creation_date</option>
3970 <option value="description">description</option>
3971 <option value="domain_source">domain_source</option>
3972 <option value="id">id</option>
3973 <option value="name">name</option>
3974 <option value="organism">organism</option>
3975 </param>
3976 <conditional name="comp_operation">
3977 <param name="operation" type="select" label="Comparison operation" >
3978 <option value="equal">equal</option>
3979 <option value="not">not</option>
3980 <option value="range">range</option>
3981 </param>
3982 <when value="equal">
3983 <param name="query_text" type="text" label="Searched term"/>
3984 </when>
3985 <when value="not">
3986 <param name="query_text" type="text" label="Searched term"/>
3987 <param name="not_query_text" type="text" label="Limiting term"/>
3988 </when>
3989 <when value="range">
3990 <param name="min" type="text" label="From"/>
3991 <param name="max" type="text" label="To"/>
3992 </when>
3993 </conditional>
3994 </repeat>
3995 </when>
3996
3997 <when value="intact-complexes">
3998 <param name="fields" type="select" label="Fields to extract" multiple="true">
3999 <option value="CHEMBL" selected="true">CHEMBL</option>
4000 <option value="CHEMBL_TARGET" selected="true">CHEMBL_TARGET</option>
4001 <option value="DIP" selected="true">DIP</option>
4002 <option value="EFO" selected="true">EFO</option>
4003 <option value="EMDB" selected="true">EMDB</option>
4004 <option value="EVIDENCE_ONTOLOGY" selected="true">EVIDENCE_ONTOLOGY</option>
4005 <option value="GO" selected="true">GO</option>
4006 <option value="IMEX" selected="true">IMEX</option>
4007 <option value="INTACT" selected="true">INTACT</option>
4008 <option value="INTACT.INTERACTOR" selected="true">INTACT.INTERACTOR</option>
4009 <option value="INTENZ" selected="true">INTENZ</option>
4010 <option value="INTERPRO" selected="true">INTERPRO</option>
4011 <option value="MATRIXDB" selected="true">MATRIXDB</option>
4012 <option value="MINT" selected="true">MINT</option>
4013 <option value="OMIM" selected="true">OMIM</option>
4014 <option value="ORPHANET" selected="true">ORPHANET</option>
4015 <option value="PDBE" selected="true">PDBE</option>
4016 <option value="PROTEIN_ONTOLOGY" selected="true">PROTEIN_ONTOLOGY</option>
4017 <option value="PUBMED" selected="true">PUBMED</option>
4018 <option value="REACTOME" selected="true">REACTOME</option>
4019 <option value="SIGNOR" selected="true">SIGNOR</option>
4020 <option value="WWPDB" selected="true">WWPDB</option>
4021 <option value="description" selected="true">description</option>
4022 <option value="domain_source" selected="true">domain_source</option>
4023 <option value="id" selected="true">id</option>
4024 <option value="name" selected="true">name</option>
4025 <validator type="no_options" message="Please select at least one field" />
4026 </param>
4027 <repeat name="queries" title="Add a query">
4028 <param name="combination_operation" type="select" label="Combination operation" >
4029 <option value="AND">AND</option>
4030 <option value="OR">OR</option>
4031 <option value="NOT">NOT</option>
4032 </param>
4033 <param name="query_field" type="select" label="Fields" >
4034 <option value="3d-r-factors">3d-r-factors</option>
4035 <option value="CHEMBL">CHEMBL</option>
4036 <option value="CHEMBL_TARGET">CHEMBL_TARGET</option>
4037 <option value="DIP">DIP</option>
4038 <option value="EFO">EFO</option>
4039 <option value="EMDB">EMDB</option>
4040 <option value="EVIDENCE_ONTOLOGY">EVIDENCE_ONTOLOGY</option>
4041 <option value="GO">GO</option>
4042 <option value="IMEX">IMEX</option>
4043 <option value="INTACT">INTACT</option>
4044 <option value="INTACT.INTERACTOR">INTACT.INTERACTOR</option>
4045 <option value="INTENZ">INTENZ</option>
4046 <option value="INTERPRO">INTERPRO</option>
4047 <option value="MATRIXDB">MATRIXDB</option>
4048 <option value="MINT">MINT</option>
4049 <option value="OMIM">OMIM</option>
4050 <option value="ORPHANET">ORPHANET</option>
4051 <option value="PDBE">PDBE</option>
4052 <option value="PROTEIN_ONTOLOGY">PROTEIN_ONTOLOGY</option>
4053 <option value="PUBMED">PUBMED</option>
4054 <option value="REACTOME">REACTOME</option>
4055 <option value="SIGNOR">SIGNOR</option>
4056 <option value="WWPDB">WWPDB</option>
4057 <option value="accepted">accepted</option>
4058 <option value="agonist">agonist</option>
4059 <option value="antagonist">antagonist</option>
4060 <option value="assembly">assembly</option>
4061 <option value="caution">caution</option>
4062 <option value="comment">comment</option>
4063 <option value="commercial_name">commercial_name</option>
4064 <option value="complex-assembly">complex-assembly</option>
4065 <option value="complex-properties">complex-properties</option>
4066 <option value="complex-synonym">complex-synonym</option>
4067 <option value="complex_recommended_name">complex_recommended_name</option>
4068 <option value="complex_synonym">complex_synonym</option>
4069 <option value="complex_systematic_name">complex_systematic_name</option>
4070 <option value="creation_date">creation_date</option>
4071 <option value="curated-complex">curated-complex</option>
4072 <option value="curation_request">curation_request</option>
4073 <option value="description">description</option>
4074 <option value="disease">disease</option>
4075 <option value="domain_source">domain_source</option>
4076 <option value="full_coverage">full_coverage</option>
4077 <option value="gene_name_synonym">gene_name_synonym</option>
4078 <option value="id">id</option>
4079 <option value="interaction_type">interaction_type</option>
4080 <option value="last_modification_date">last_modification_date</option>
4081 <option value="ligand">ligand</option>
4082 <option value="name">name</option>
4083 <option value="remark-internal">remark-internal</option>
4084 <option value="source-text">source-text</option>
4085 <option value="synonym">synonym</option>
4086 </param>
4087 <conditional name="comp_operation">
4088 <param name="operation" type="select" label="Comparison operation" >
4089 <option value="equal">equal</option>
4090 <option value="not">not</option>
4091 <option value="range">range</option>
4092 </param>
4093 <when value="equal">
4094 <param name="query_text" type="text" label="Searched term"/>
4095 </when>
4096 <when value="not">
4097 <param name="query_text" type="text" label="Searched term"/>
4098 <param name="not_query_text" type="text" label="Limiting term"/>
4099 </when>
4100 <when value="range">
4101 <param name="min" type="text" label="From"/>
4102 <param name="max" type="text" label="To"/>
4103 </when>
4104 </conditional>
4105 </repeat>
4106 </when>
4107
4108 <when value="intact-experiments">
4109 <param name="fields" type="select" label="Fields to extract" multiple="true">
4110 <option value="BRENDA" selected="true">BRENDA</option>
4111 <option value="DOI" selected="true">DOI</option>
4112 <option value="EFO" selected="true">EFO</option>
4113 <option value="EMDB" selected="true">EMDB</option>
4114 <option value="GO" selected="true">GO</option>
4115 <option value="IMEX" selected="true">IMEX</option>
4116 <option value="INTACT" selected="true">INTACT</option>
4117 <option value="INTACT.INTERACTION" selected="true">INTACT.INTERACTION</option>
4118 <option value="MINT" selected="true">MINT</option>
4119 <option value="OMIM" selected="true">OMIM</option>
4120 <option value="PDBE" selected="true">PDBE</option>
4121 <option value="PMC" selected="true">PMC</option>
4122 <option value="PRIDE" selected="true">PRIDE</option>
4123 <option value="PROSITE" selected="true">PROSITE</option>
4124 <option value="PROTEOMEXCHANGE" selected="true">PROTEOMEXCHANGE</option>
4125 <option value="PSI-MI" selected="true">PSI-MI</option>
4126 <option value="PUBMED" selected="true">PUBMED</option>
4127 <option value="RCSB_PDB" selected="true">RCSB_PDB</option>
4128 <option value="UNIPROT_TAXONOMY" selected="true">UNIPROT_TAXONOMY</option>
4129 <option value="WWPDB" selected="true">WWPDB</option>
4130 <option value="description" selected="true">description</option>
4131 <option value="domain_source" selected="true">domain_source</option>
4132 <option value="id" selected="true">id</option>
4133 <option value="name" selected="true">name</option>
4134 <validator type="no_options" message="Please select at least one field" />
4135 </param>
4136 <repeat name="queries" title="Add a query">
4137 <param name="combination_operation" type="select" label="Combination operation" >
4138 <option value="AND">AND</option>
4139 <option value="OR">OR</option>
4140 <option value="NOT">NOT</option>
4141 </param>
4142 <param name="query_field" type="select" label="Fields" >
4143 <option value="BRENDA">BRENDA</option>
4144 <option value="DOI">DOI</option>
4145 <option value="EFO">EFO</option>
4146 <option value="EMDB">EMDB</option>
4147 <option value="GO">GO</option>
4148 <option value="IMEX">IMEX</option>
4149 <option value="IMEX_SOURCE">IMEX_SOURCE</option>
4150 <option value="INTACT">INTACT</option>
4151 <option value="INTACT.INTERACTION">INTACT.INTERACTION</option>
4152 <option value="MINT">MINT</option>
4153 <option value="OMIM">OMIM</option>
4154 <option value="PDBE">PDBE</option>
4155 <option value="PMC">PMC</option>
4156 <option value="PRIDE">PRIDE</option>
4157 <option value="PROSITE">PROSITE</option>
4158 <option value="PROTEOMEXCHANGE">PROTEOMEXCHANGE</option>
4159 <option value="PSI-MI">PSI-MI</option>
4160 <option value="PUBMED">PUBMED</option>
4161 <option value="RCSB_PDB">RCSB_PDB</option>
4162 <option value="UNIPROT_TAXONOMY">UNIPROT_TAXONOMY</option>
4163 <option value="WWPDB">WWPDB</option>
4164 <option value="creation_date">creation_date</option>
4165 <option value="description">description</option>
4166 <option value="domain_source">domain_source</option>
4167 <option value="id">id</option>
4168 <option value="interaction_detection_method">interaction_detection_method</option>
4169 <option value="interaction_type">interaction_type</option>
4170 <option value="last_modification_date">last_modification_date</option>
4171 <option value="name">name</option>
4172 <option value="participant_detection_method">participant_detection_method</option>
4173 </param>
4174 <conditional name="comp_operation">
4175 <param name="operation" type="select" label="Comparison operation" >
4176 <option value="equal">equal</option>
4177 <option value="not">not</option>
4178 <option value="range">range</option>
4179 </param>
4180 <when value="equal">
4181 <param name="query_text" type="text" label="Searched term"/>
4182 </when>
4183 <when value="not">
4184 <param name="query_text" type="text" label="Searched term"/>
4185 <param name="not_query_text" type="text" label="Limiting term"/>
4186 </when>
4187 <when value="range">
4188 <param name="min" type="text" label="From"/>
4189 <param name="max" type="text" label="To"/>
4190 </when>
4191 </conditional>
4192 </repeat>
4193 </when>
4194
4195 <when value="intact-interactions">
4196 <param name="fields" type="select" label="Fields to extract" multiple="true">
4197 <option value="AFCS" selected="true">AFCS</option>
4198 <option value="BRENDA" selected="true">BRENDA</option>
4199 <option value="CELL_ONTOLOGY" selected="true">CELL_ONTOLOGY</option>
4200 <option value="CHEBI" selected="true">CHEBI</option>
4201 <option value="CHEMBL_COMPOUND" selected="true">CHEMBL_COMPOUND</option>
4202 <option value="EFO" selected="true">EFO</option>
4203 <option value="EMDB" selected="true">EMDB</option>
4204 <option value="FLANNOTATOR" selected="true">FLANNOTATOR</option>
4205 <option value="GO" selected="true">GO</option>
4206 <option value="IMEX" selected="true">IMEX</option>
4207 <option value="INTACT" selected="true">INTACT</option>
4208 <option value="INTACT.EXPERIMENT" selected="true">INTACT.EXPERIMENT</option>
4209 <option value="INTACT.INTERACTOR" selected="true">INTACT.INTERACTOR</option>
4210 <option value="INTENZ" selected="true">INTENZ</option>
4211 <option value="INTERPRO" selected="true">INTERPRO</option>
4212 <option value="MATRIXDB" selected="true">MATRIXDB</option>
4213 <option value="MINT" selected="true">MINT</option>
4214 <option value="OMIM" selected="true">OMIM</option>
4215 <option value="PDBE" selected="true">PDBE</option>
4216 <option value="PDBJ" selected="true">PDBJ</option>
4217 <option value="PMC" selected="true">PMC</option>
4218 <option value="PRIDE" selected="true">PRIDE</option>
4219 <option value="PRINTS" selected="true">PRINTS</option>
4220 <option value="PROTEOMEXCHANGE" selected="true">PROTEOMEXCHANGE</option>
4221 <option value="PSI-MI" selected="true">PSI-MI</option>
4222 <option value="PUBMED" selected="true">PUBMED</option>
4223 <option value="RCSB_PDB" selected="true">RCSB_PDB</option>
4224 <option value="REACTOME" selected="true">REACTOME</option>
4225 <option value="SGD" selected="true">SGD</option>
4226 <option value="UNIPROTKB" selected="true">UNIPROTKB</option>
4227 <option value="WWPDB" selected="true">WWPDB</option>
4228 <option value="description" selected="true">description</option>
4229 <option value="domain_source" selected="true">domain_source</option>
4230 <option value="id" selected="true">id</option>
4231 <option value="name" selected="true">name</option>
4232 <validator type="no_options" message="Please select at least one field" />
4233 </param>
4234 <repeat name="queries" title="Add a query">
4235 <param name="combination_operation" type="select" label="Combination operation" >
4236 <option value="AND">AND</option>
4237 <option value="OR">OR</option>
4238 <option value="NOT">NOT</option>
4239 </param>
4240 <param name="query_field" type="select" label="Fields" >
4241 <option value="AFCS">AFCS</option>
4242 <option value="BRENDA">BRENDA</option>
4243 <option value="CELL_ONTOLOGY">CELL_ONTOLOGY</option>
4244 <option value="CHEBI">CHEBI</option>
4245 <option value="CHEMBL_COMPOUND">CHEMBL_COMPOUND</option>
4246 <option value="EFO">EFO</option>
4247 <option value="EMDB">EMDB</option>
4248 <option value="FLANNOTATOR">FLANNOTATOR</option>
4249 <option value="GO">GO</option>
4250 <option value="IMEX">IMEX</option>
4251 <option value="INTACT">INTACT</option>
4252 <option value="INTACT.EXPERIMENT">INTACT.EXPERIMENT</option>
4253 <option value="INTACT.INTERACTOR">INTACT.INTERACTOR</option>
4254 <option value="INTENZ">INTENZ</option>
4255 <option value="INTERPRO">INTERPRO</option>
4256 <option value="MATRIXDB">MATRIXDB</option>
4257 <option value="MINT">MINT</option>
4258 <option value="MPIDB">MPIDB</option>
4259 <option value="OMIM">OMIM</option>
4260 <option value="PDBE">PDBE</option>
4261 <option value="PDBJ">PDBJ</option>
4262 <option value="PMC">PMC</option>
4263 <option value="PRIDE">PRIDE</option>
4264 <option value="PRINTS">PRINTS</option>
4265 <option value="PROTEOMEXCHANGE">PROTEOMEXCHANGE</option>
4266 <option value="PSI-MI">PSI-MI</option>
4267 <option value="PUBMED">PUBMED</option>
4268 <option value="RCSB_PDB">RCSB_PDB</option>
4269 <option value="REACTOME">REACTOME</option>
4270 <option value="SGD">SGD</option>
4271 <option value="UNIPROTKB">UNIPROTKB</option>
4272 <option value="WWPDB">WWPDB</option>
4273 <option value="creation_date">creation_date</option>
4274 <option value="description">description</option>
4275 <option value="domain_source">domain_source</option>
4276 <option value="id">id</option>
4277 <option value="interaction_detection_method">interaction_detection_method</option>
4278 <option value="interaction_type">interaction_type</option>
4279 <option value="last_modification_date">last_modification_date</option>
4280 <option value="name">name</option>
4281 <option value="participant_detection_method">participant_detection_method</option>
4282 </param>
4283 <conditional name="comp_operation">
4284 <param name="operation" type="select" label="Comparison operation" >
4285 <option value="equal">equal</option>
4286 <option value="not">not</option>
4287 <option value="range">range</option>
4288 </param>
4289 <when value="equal">
4290 <param name="query_text" type="text" label="Searched term"/>
4291 </when>
4292 <when value="not">
4293 <param name="query_text" type="text" label="Searched term"/>
4294 <param name="not_query_text" type="text" label="Limiting term"/>
4295 </when>
4296 <when value="range">
4297 <param name="min" type="text" label="From"/>
4298 <param name="max" type="text" label="To"/>
4299 </when>
4300 </conditional>
4301 </repeat>
4302 </when>
4303
4304 <when value="intact-interactors">
4305 <param name="fields" type="select" label="Fields to extract" multiple="true">
4306 <option value="AFCS" selected="true">AFCS</option>
4307 <option value="CAMJEDB" selected="true">CAMJEDB</option>
4308 <option value="CAS_REGISTRY_NUMBER" selected="true">CAS_REGISTRY_NUMBER</option>
4309 <option value="CHEBI" selected="true">CHEBI</option>
4310 <option value="CHEMBL" selected="true">CHEMBL</option>
4311 <option value="CHEMBL_COMPOUND" selected="true">CHEMBL_COMPOUND</option>
4312 <option value="CHEMBL_TARGET" selected="true">CHEMBL_TARGET</option>
4313 <option value="CYGD" selected="true">CYGD</option>
4314 <option value="DDBJ_EMBL_GENBANK" selected="true">DDBJ_EMBL_GENBANK</option>
4315 <option value="DICTYBASE" selected="true">DICTYBASE</option>
4316 <option value="EFO" selected="true">EFO</option>
4317 <option value="EMDB" selected="true">EMDB</option>
4318 <option value="ENSEMBL" selected="true">ENSEMBL</option>
4319 <option value="ENSEMBLGENOMES" selected="true">ENSEMBLGENOMES</option>
4320 <option value="ENTREZGENE_LOCUSLINK" selected="true">ENTREZGENE_LOCUSLINK</option>
4321 <option value="EVIDENCE_ONTOLOGY" selected="true">EVIDENCE_ONTOLOGY</option>
4322 <option value="FLANNOTATOR" selected="true">FLANNOTATOR</option>
4323 <option value="FLYBASE" selected="true">FLYBASE</option>
4324 <option value="GENBANK_INDENTIFIER" selected="true">GENBANK_INDENTIFIER</option>
4325 <option value="GENBANK_NUCL_GI" selected="true">GENBANK_NUCL_GI</option>
4326 <option value="GENBANK_PROTEIN_GI" selected="true">GENBANK_PROTEIN_GI</option>
4327 <option value="GO" selected="true">GO</option>
4328 <option value="HUMAN_GENOME_NOMENCLATURE_COMMITTEE" selected="true">HUMAN_GENOME_NOMENCLATURE_COMMITTEE</option>
4329 <option value="IMEX" selected="true">IMEX</option>
4330 <option value="INTACT" selected="true">INTACT</option>
4331 <option value="INTACT.COMPLEX" selected="true">INTACT.COMPLEX</option>
4332 <option value="INTACT.EXPERIMENT" selected="true">INTACT.EXPERIMENT</option>
4333 <option value="INTACT.INTERACTION" selected="true">INTACT.INTERACTION</option>
4334 <option value="INTENZ" selected="true">INTENZ</option>
4335 <option value="INTERPRO" selected="true">INTERPRO</option>
4336 <option value="IPI" selected="true">IPI</option>
4337 <option value="MATRIXDB" selected="true">MATRIXDB</option>
4338 <option value="MINT" selected="true">MINT</option>
4339 <option value="MIRBASE" selected="true">MIRBASE</option>
4340 <option value="PDBE" selected="true">PDBE</option>
4341 <option value="PROTEIN_ONTOLOGY" selected="true">PROTEIN_ONTOLOGY</option>
4342 <option value="PSI-MI" selected="true">PSI-MI</option>
4343 <option value="PUBCHEM" selected="true">PUBCHEM</option>
4344 <option value="PUBMED" selected="true">PUBMED</option>
4345 <option value="RCSB_PDB" selected="true">RCSB_PDB</option>
4346 <option value="REACTOME" selected="true">REACTOME</option>
4347 <option value="REFSEQ" selected="true">REFSEQ</option>
4348 <option value="RGD" selected="true">RGD</option>
4349 <option value="RNACENTRAL" selected="true">RNACENTRAL</option>
4350 <option value="SGD" selected="true">SGD</option>
4351 <option value="TAIR" selected="true">TAIR</option>
4352 <option value="UNIPARC" selected="true">UNIPARC</option>
4353 <option value="UNIPROTKB" selected="true">UNIPROTKB</option>
4354 <option value="WORMBASE" selected="true">WORMBASE</option>
4355 <option value="WWPDB" selected="true">WWPDB</option>
4356 <option value="description" selected="true">description</option>
4357 <option value="domain_source" selected="true">domain_source</option>
4358 <option value="id" selected="true">id</option>
4359 <option value="name" selected="true">name</option>
4360 <validator type="no_options" message="Please select at least one field" />
4361 </param>
4362 <repeat name="queries" title="Add a query">
4363 <param name="combination_operation" type="select" label="Combination operation" >
4364 <option value="AND">AND</option>
4365 <option value="OR">OR</option>
4366 <option value="NOT">NOT</option>
4367 </param>
4368 <param name="query_field" type="select" label="Fields" >
4369 <option value="AFCS">AFCS</option>
4370 <option value="BIND_SMID">BIND_SMID</option>
4371 <option value="CAMJEDB">CAMJEDB</option>
4372 <option value="CAS_REGISTRY_NUMBER">CAS_REGISTRY_NUMBER</option>
4373 <option value="CHEBI">CHEBI</option>
4374 <option value="CHEMBL">CHEMBL</option>
4375 <option value="CHEMBL_COMPOUND">CHEMBL_COMPOUND</option>
4376 <option value="CHEMBL_TARGET">CHEMBL_TARGET</option>
4377 <option value="CYGD">CYGD</option>
4378 <option value="DDBJ_EMBL_GENBANK">DDBJ_EMBL_GENBANK</option>
4379 <option value="DICTYBASE">DICTYBASE</option>
4380 <option value="EFO">EFO</option>
4381 <option value="EMDB">EMDB</option>
4382 <option value="ENSEMBL">ENSEMBL</option>
4383 <option value="ENSEMBLGENOMES">ENSEMBLGENOMES</option>
4384 <option value="ENTREZGENE_LOCUSLINK">ENTREZGENE_LOCUSLINK</option>
4385 <option value="EVIDENCE_ONTOLOGY">EVIDENCE_ONTOLOGY</option>
4386 <option value="FLANNOTATOR">FLANNOTATOR</option>
4387 <option value="FLYBASE">FLYBASE</option>
4388 <option value="GENBANK_INDENTIFIER">GENBANK_INDENTIFIER</option>
4389 <option value="GENBANK_NUCL_GI">GENBANK_NUCL_GI</option>
4390 <option value="GENBANK_PROTEIN_GI">GENBANK_PROTEIN_GI</option>
4391 <option value="GO">GO</option>
4392 <option value="HUMAN_GENOME_NOMENCLATURE_COMMITTEE">HUMAN_GENOME_NOMENCLATURE_COMMITTEE</option>
4393 <option value="IMEX">IMEX</option>
4394 <option value="INTACT">INTACT</option>
4395 <option value="INTACT.COMPLEX">INTACT.COMPLEX</option>
4396 <option value="INTACT.EXPERIMENT">INTACT.EXPERIMENT</option>
4397 <option value="INTACT.INTERACTION">INTACT.INTERACTION</option>
4398 <option value="INTENZ">INTENZ</option>
4399 <option value="INTERPRO">INTERPRO</option>
4400 <option value="IPI">IPI</option>
4401 <option value="MATRIXDB">MATRIXDB</option>
4402 <option value="MINT">MINT</option>
4403 <option value="MIRBASE">MIRBASE</option>
4404 <option value="PDBE">PDBE</option>
4405 <option value="PROTEIN_ONTOLOGY">PROTEIN_ONTOLOGY</option>
4406 <option value="PSI-MI">PSI-MI</option>
4407 <option value="PUBCHEM">PUBCHEM</option>
4408 <option value="PUBMED">PUBMED</option>
4409 <option value="RCSB_PDB">RCSB_PDB</option>
4410 <option value="REACTOME">REACTOME</option>
4411 <option value="REFSEQ">REFSEQ</option>
4412 <option value="RGD">RGD</option>
4413 <option value="RNACENTRAL">RNACENTRAL</option>
4414 <option value="SGD">SGD</option>
4415 <option value="TAIR">TAIR</option>
4416 <option value="UNIPARC">UNIPARC</option>
4417 <option value="UNIPROTKB">UNIPROTKB</option>
4418 <option value="WORMBASE">WORMBASE</option>
4419 <option value="WWPDB">WWPDB</option>
4420 <option value="author_assigned_name">author_assigned_name</option>
4421 <option value="complex_recommended_name">complex_recommended_name</option>
4422 <option value="complex_synonym">complex_synonym</option>
4423 <option value="complex_systematic_name">complex_systematic_name</option>
4424 <option value="creation_date">creation_date</option>
4425 <option value="description">description</option>
4426 <option value="domain_source">domain_source</option>
4427 <option value="gene_name">gene_name</option>
4428 <option value="gene_name_synonym">gene_name_synonym</option>
4429 <option value="id">id</option>
4430 <option value="interaction_detection_method">interaction_detection_method</option>
4431 <option value="interaction_type">interaction_type</option>
4432 <option value="isoform_synonym">isoform_synonym</option>
4433 <option value="iupac_name">iupac_name</option>
4434 <option value="last_modification_date">last_modification_date</option>
4435 <option value="locus_name">locus_name</option>
4436 <option value="name">name</option>
4437 <option value="orf_name">orf_name</option>
4438 <option value="participant_detection_method">participant_detection_method</option>
4439 <option value="synonym">synonym</option>
4440 </param>
4441 <conditional name="comp_operation">
4442 <param name="operation" type="select" label="Comparison operation" >
4443 <option value="equal">equal</option>
4444 <option value="not">not</option>
4445 <option value="range">range</option>
4446 </param>
4447 <when value="equal">
4448 <param name="query_text" type="text" label="Searched term"/>
4449 </when>
4450 <when value="not">
4451 <param name="query_text" type="text" label="Searched term"/>
4452 <param name="not_query_text" type="text" label="Limiting term"/>
4453 </when>
4454 <when value="range">
4455 <param name="min" type="text" label="From"/>
4456 <param name="max" type="text" label="To"/>
4457 </when>
4458 </conditional>
4459 </repeat>
4460 </when>
4461
4462 <when value="intenz">
4463 <param name="fields" type="select" label="Fields to extract" multiple="true">
4464 <option value="CAS" selected="true">CAS</option>
4465 <option value="CHEBI" selected="true">CHEBI</option>
4466 <option value="EC" selected="true">EC</option>
4467 <option value="GO" selected="true">GO</option>
4468 <option value="MEROPS" selected="true">MEROPS</option>
4469 <option value="PROSITE" selected="true">PROSITE</option>
4470 <option value="PUBMED" selected="true">PUBMED</option>
4471 <option value="RHEA" selected="true">RHEA</option>
4472 <option value="UNIPROT" selected="true">UNIPROT</option>
4473 <option value="acc" selected="true">acc</option>
4474 <option value="description" selected="true">description</option>
4475 <option value="domain_source" selected="true">domain_source</option>
4476 <option value="id" selected="true">id</option>
4477 <option value="name" selected="true">name</option>
4478 <validator type="no_options" message="Please select at least one field" />
4479 </param>
4480 <repeat name="queries" title="Add a query">
4481 <param name="combination_operation" type="select" label="Combination operation" >
4482 <option value="AND">AND</option>
4483 <option value="OR">OR</option>
4484 <option value="NOT">NOT</option>
4485 </param>
4486 <param name="query_field" type="select" label="Fields" >
4487 <option value="CAS">CAS</option>
4488 <option value="CHEBI">CHEBI</option>
4489 <option value="EC">EC</option>
4490 <option value="GO">GO</option>
4491 <option value="MEROPS">MEROPS</option>
4492 <option value="PROSITE">PROSITE</option>
4493 <option value="PUBMED">PUBMED</option>
4494 <option value="RHEA">RHEA</option>
4495 <option value="UNIPROT">UNIPROT</option>
4496 <option value="acc">acc</option>
4497 <option value="comment">comment</option>
4498 <option value="description">description</option>
4499 <option value="domain_source">domain_source</option>
4500 <option value="id">id</option>
4501 <option value="medline">medline</option>
4502 <option value="name">name</option>
4503 <option value="reaction">reaction</option>
4504 <option value="reference">reference</option>
4505 <option value="synonym">synonym</option>
4506 <option value="systematic_name">systematic_name</option>
4507 </param>
4508 <conditional name="comp_operation">
4509 <param name="operation" type="select" label="Comparison operation" >
4510 <option value="equal">equal</option>
4511 <option value="not">not</option>
4512 <option value="range">range</option>
4513 </param>
4514 <when value="equal">
4515 <param name="query_text" type="text" label="Searched term"/>
4516 </when>
4517 <when value="not">
4518 <param name="query_text" type="text" label="Searched term"/>
4519 <param name="not_query_text" type="text" label="Limiting term"/>
4520 </when>
4521 <when value="range">
4522 <param name="min" type="text" label="From"/>
4523 <param name="max" type="text" label="To"/>
4524 </when>
4525 </conditional>
4526 </repeat>
4527 </when>
4528
4529 <when value="interpro">
4530 <param name="fields" type="select" label="Fields to extract" multiple="true">
4531 <option value="CATH" selected="true">CATH</option>
4532 <option value="CAZY" selected="true">CAZY</option>
4533 <option value="CDD" selected="true">CDD</option>
4534 <option value="COME" selected="true">COME</option>
4535 <option value="EC" selected="true">EC</option>
4536 <option value="ENZYME" selected="true">ENZYME</option>
4537 <option value="GENE3D" selected="true">GENE3D</option>
4538 <option value="GO" selected="true">GO</option>
4539 <option value="HAMAP" selected="true">HAMAP</option>
4540 <option value="INTERPRO_PARENT" selected="true">INTERPRO_PARENT</option>
4541 <option value="IUPHAR_RECEPTOR_CODE" selected="true">IUPHAR_RECEPTOR_CODE</option>
4542 <option value="PANDIT" selected="true">PANDIT</option>
4543 <option value="PANTHER" selected="true">PANTHER</option>
4544 <option value="PDB" selected="true">PDB</option>
4545 <option value="PDBSITE" selected="true">PDBSITE</option>
4546 <option value="PFAM" selected="true">PFAM</option>
4547 <option value="PFAM_SN" selected="true">PFAM_SN</option>
4548 <option value="PIRSF" selected="true">PIRSF</option>
4549 <option value="PRIAM" selected="true">PRIAM</option>
4550 <option value="PRINTS" selected="true">PRINTS</option>
4551 <option value="PRODOM" selected="true">PRODOM</option>
4552 <option value="PROSITE" selected="true">PROSITE</option>
4553 <option value="PROSITE_DOC" selected="true">PROSITE_DOC</option>
4554 <option value="PROSITE_PATTERNS" selected="true">PROSITE_PATTERNS</option>
4555 <option value="PUBMED" selected="true">PUBMED</option>
4556 <option value="SCOP" selected="true">SCOP</option>
4557 <option value="SFLD" selected="true">SFLD</option>
4558 <option value="SMART" selected="true">SMART</option>
4559 <option value="SUPERFAMILY" selected="true">SUPERFAMILY</option>
4560 <option value="TIGRFAMS" selected="true">TIGRFAMS</option>
4561 <option value="UNIPROT" selected="true">UNIPROT</option>
4562 <option value="description" selected="true">description</option>
4563 <option value="domain_source" selected="true">domain_source</option>
4564 <option value="id" selected="true">id</option>
4565 <option value="name" selected="true">name</option>
4566 <option value="type" selected="true">type</option>
4567 <validator type="no_options" message="Please select at least one field" />
4568 </param>
4569 <repeat name="queries" title="Add a query">
4570 <param name="combination_operation" type="select" label="Combination operation" >
4571 <option value="AND">AND</option>
4572 <option value="OR">OR</option>
4573 <option value="NOT">NOT</option>
4574 </param>
4575 <param name="query_field" type="select" label="Fields" >
4576 <option value="CATH">CATH</option>
4577 <option value="CAZY">CAZY</option>
4578 <option value="CDD">CDD</option>
4579 <option value="CDD_SN">CDD_SN</option>
4580 <option value="COME">COME</option>
4581 <option value="EC">EC</option>
4582 <option value="ENZYME">ENZYME</option>
4583 <option value="GENE3D">GENE3D</option>
4584 <option value="GENE3D_SN">GENE3D_SN</option>
4585 <option value="GO">GO</option>
4586 <option value="HAMAP">HAMAP</option>
4587 <option value="HAMAP_SN">HAMAP_SN</option>
4588 <option value="INTERPRO_PARENT">INTERPRO_PARENT</option>
4589 <option value="IUPHAR_RECEPTOR_CODE">IUPHAR_RECEPTOR_CODE</option>
4590 <option value="PANDIT">PANDIT</option>
4591 <option value="PANTHER">PANTHER</option>
4592 <option value="PANTHER_SN">PANTHER_SN</option>
4593 <option value="PDB">PDB</option>
4594 <option value="PDBSITE">PDBSITE</option>
4595 <option value="PFAM">PFAM</option>
4596 <option value="PFAM_SN">PFAM_SN</option>
4597 <option value="PIRSF">PIRSF</option>
4598 <option value="PIRSF_SN">PIRSF_SN</option>
4599 <option value="PRIAM">PRIAM</option>
4600 <option value="PRINTS">PRINTS</option>
4601 <option value="PRINTS_SN">PRINTS_SN</option>
4602 <option value="PRODOM">PRODOM</option>
4603 <option value="PRODOM_SN">PRODOM_SN</option>
4604 <option value="PROFILE_SN">PROFILE_SN</option>
4605 <option value="PROSITE">PROSITE</option>
4606 <option value="PROSITE_DOC">PROSITE_DOC</option>
4607 <option value="PROSITE_PATTERNS">PROSITE_PATTERNS</option>
4608 <option value="PROSITE_SN">PROSITE_SN</option>
4609 <option value="PUBMED">PUBMED</option>
4610 <option value="SCOP">SCOP</option>
4611 <option value="SFLD">SFLD</option>
4612 <option value="SFLD_SN">SFLD_SN</option>
4613 <option value="SMART">SMART</option>
4614 <option value="SMART_SN">SMART_SN</option>
4615 <option value="SSF_SN">SSF_SN</option>
4616 <option value="SUPERFAMILY">SUPERFAMILY</option>
4617 <option value="TIGRFAMS">TIGRFAMS</option>
4618 <option value="TIGRFAMS_SN">TIGRFAMS_SN</option>
4619 <option value="UNIPROT">UNIPROT</option>
4620 <option value="description">description</option>
4621 <option value="domain_source">domain_source</option>
4622 <option value="id">id</option>
4623 <option value="name">name</option>
4624 <option value="short_name">short_name</option>
4625 <option value="type">type</option>
4626 </param>
4627 <conditional name="comp_operation">
4628 <param name="operation" type="select" label="Comparison operation" >
4629 <option value="equal">equal</option>
4630 <option value="not">not</option>
4631 <option value="range">range</option>
4632 </param>
4633 <when value="equal">
4634 <param name="query_text" type="text" label="Searched term"/>
4635 </when>
4636 <when value="not">
4637 <param name="query_text" type="text" label="Searched term"/>
4638 <param name="not_query_text" type="text" label="Limiting term"/>
4639 </when>
4640 <when value="range">
4641 <param name="min" type="text" label="From"/>
4642 <param name="max" type="text" label="To"/>
4643 </when>
4644 </conditional>
4645 </repeat>
4646 </when>
4647
4648 <when value="iprmatches">
4649 <param name="fields" type="select" label="Fields to extract" multiple="true">
4650 <option value="CDD" selected="true">CDD</option>
4651 <option value="GENE3D" selected="true">GENE3D</option>
4652 <option value="HAMAP" selected="true">HAMAP</option>
4653 <option value="INTERPRO" selected="true">INTERPRO</option>
4654 <option value="MOBIDBLT" selected="true">MOBIDBLT</option>
4655 <option value="PANTHER" selected="true">PANTHER</option>
4656 <option value="PFAM" selected="true">PFAM</option>
4657 <option value="PIRSF" selected="true">PIRSF</option>
4658 <option value="PRINTS" selected="true">PRINTS</option>
4659 <option value="PRODOM" selected="true">PRODOM</option>
4660 <option value="PROFILE" selected="true">PROFILE</option>
4661 <option value="PROSITE" selected="true">PROSITE</option>
4662 <option value="SFLD" selected="true">SFLD</option>
4663 <option value="SMART" selected="true">SMART</option>
4664 <option value="SSF" selected="true">SSF</option>
4665 <option value="TIGRFAMS" selected="true">TIGRFAMS</option>
4666 <option value="UNIPROT" selected="true">UNIPROT</option>
4667 <option value="domain_source" selected="true">domain_source</option>
4668 <option value="id" selected="true">id</option>
4669 <option value="name" selected="true">name</option>
4670 <validator type="no_options" message="Please select at least one field" />
4671 </param>
4672 <repeat name="queries" title="Add a query">
4673 <param name="combination_operation" type="select" label="Combination operation" >
4674 <option value="AND">AND</option>
4675 <option value="OR">OR</option>
4676 <option value="NOT">NOT</option>
4677 </param>
4678 <param name="query_field" type="select" label="Fields" >
4679 <option value="CDD">CDD</option>
4680 <option value="GENE3D">GENE3D</option>
4681 <option value="HAMAP">HAMAP</option>
4682 <option value="INTERPRO">INTERPRO</option>
4683 <option value="MOBIDBLT">MOBIDBLT</option>
4684 <option value="PANTHER">PANTHER</option>
4685 <option value="PFAM">PFAM</option>
4686 <option value="PIRSF">PIRSF</option>
4687 <option value="PRINTS">PRINTS</option>
4688 <option value="PRODOM">PRODOM</option>
4689 <option value="PROFILE">PROFILE</option>
4690 <option value="PROSITE">PROSITE</option>
4691 <option value="SFLD">SFLD</option>
4692 <option value="SMART">SMART</option>
4693 <option value="SSF">SSF</option>
4694 <option value="TIGRFAMS">TIGRFAMS</option>
4695 <option value="UNIPROT">UNIPROT</option>
4696 <option value="domain_source">domain_source</option>
4697 <option value="id">id</option>
4698 <option value="name">name</option>
4699 <option value="signatureName">signatureName</option>
4700 </param>
4701 <conditional name="comp_operation">
4702 <param name="operation" type="select" label="Comparison operation" >
4703 <option value="equal">equal</option>
4704 <option value="not">not</option>
4705 <option value="range">range</option>
4706 </param>
4707 <when value="equal">
4708 <param name="query_text" type="text" label="Searched term"/>
4709 </when>
4710 <when value="not">
4711 <param name="query_text" type="text" label="Searched term"/>
4712 <param name="not_query_text" type="text" label="Limiting term"/>
4713 </when>
4714 <when value="range">
4715 <param name="min" type="text" label="From"/>
4716 <param name="max" type="text" label="To"/>
4717 </when>
4718 </conditional>
4719 </repeat>
4720 </when>
4721
4722 <when value="jpo">
4723 <param name="fields" type="select" label="Fields to extract" multiple="true">
4724 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
4725 <option value="TAXON" selected="true">TAXON</option>
4726 <option value="acc" selected="true">acc</option>
4727 <option value="description" selected="true">description</option>
4728 <option value="doc_file" selected="true">doc_file</option>
4729 <option value="domain_source" selected="true">domain_source</option>
4730 <option value="id" selected="true">id</option>
4731 <option value="offset_end" selected="true">offset_end</option>
4732 <option value="offset_start" selected="true">offset_start</option>
4733 <validator type="no_options" message="Please select at least one field" />
4734 </param>
4735 <repeat name="queries" title="Add a query">
4736 <param name="combination_operation" type="select" label="Combination operation" >
4737 <option value="AND">AND</option>
4738 <option value="OR">OR</option>
4739 <option value="NOT">NOT</option>
4740 </param>
4741 <param name="query_field" type="select" label="Fields" >
4742 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
4743 <option value="TAXON">TAXON</option>
4744 <option value="acc">acc</option>
4745 <option value="creation_date">creation_date</option>
4746 <option value="data_class">data_class</option>
4747 <option value="description">description</option>
4748 <option value="domain_source">domain_source</option>
4749 <option value="id">id</option>
4750 <option value="keywords">keywords</option>
4751 <option value="length">length</option>
4752 <option value="md5">md5</option>
4753 <option value="organism">organism</option>
4754 <option value="organism_classification">organism_classification</option>
4755 <option value="organism_species">organism_species</option>
4756 <option value="references">references</option>
4757 </param>
4758 <conditional name="comp_operation">
4759 <param name="operation" type="select" label="Comparison operation" >
4760 <option value="equal">equal</option>
4761 <option value="not">not</option>
4762 <option value="range">range</option>
4763 </param>
4764 <when value="equal">
4765 <param name="query_text" type="text" label="Searched term"/>
4766 </when>
4767 <when value="not">
4768 <param name="query_text" type="text" label="Searched term"/>
4769 <param name="not_query_text" type="text" label="Limiting term"/>
4770 </when>
4771 <when value="range">
4772 <param name="min" type="text" label="From"/>
4773 <param name="max" type="text" label="To"/>
4774 </when>
4775 </conditional>
4776 </repeat>
4777 </when>
4778
4779 <when value="kipo">
4780 <param name="fields" type="select" label="Fields to extract" multiple="true">
4781 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
4782 <option value="TAXON" selected="true">TAXON</option>
4783 <option value="acc" selected="true">acc</option>
4784 <option value="description" selected="true">description</option>
4785 <option value="doc_file" selected="true">doc_file</option>
4786 <option value="domain_source" selected="true">domain_source</option>
4787 <option value="id" selected="true">id</option>
4788 <option value="offset_end" selected="true">offset_end</option>
4789 <option value="offset_start" selected="true">offset_start</option>
4790 <validator type="no_options" message="Please select at least one field" />
4791 </param>
4792 <repeat name="queries" title="Add a query">
4793 <param name="combination_operation" type="select" label="Combination operation" >
4794 <option value="AND">AND</option>
4795 <option value="OR">OR</option>
4796 <option value="NOT">NOT</option>
4797 </param>
4798 <param name="query_field" type="select" label="Fields" >
4799 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
4800 <option value="TAXON">TAXON</option>
4801 <option value="acc">acc</option>
4802 <option value="creation_date">creation_date</option>
4803 <option value="data_class">data_class</option>
4804 <option value="description">description</option>
4805 <option value="domain_source">domain_source</option>
4806 <option value="id">id</option>
4807 <option value="keywords">keywords</option>
4808 <option value="length">length</option>
4809 <option value="md5">md5</option>
4810 <option value="organism">organism</option>
4811 <option value="organism_classification">organism_classification</option>
4812 <option value="organism_species">organism_species</option>
4813 <option value="references">references</option>
4814 </param>
4815 <conditional name="comp_operation">
4816 <param name="operation" type="select" label="Comparison operation" >
4817 <option value="equal">equal</option>
4818 <option value="not">not</option>
4819 <option value="range">range</option>
4820 </param>
4821 <when value="equal">
4822 <param name="query_text" type="text" label="Searched term"/>
4823 </when>
4824 <when value="not">
4825 <param name="query_text" type="text" label="Searched term"/>
4826 <param name="not_query_text" type="text" label="Limiting term"/>
4827 </when>
4828 <when value="range">
4829 <param name="min" type="text" label="From"/>
4830 <param name="max" type="text" label="To"/>
4831 </when>
4832 </conditional>
4833 </repeat>
4834 </when>
4835
4836 <when value="lrg">
4837 <param name="fields" type="select" label="Fields to extract" multiple="true">
4838 <option value="CCDS" selected="true">CCDS</option>
4839 <option value="ENSEMBL" selected="true">ENSEMBL</option>
4840 <option value="GENEID" selected="true">GENEID</option>
4841 <option value="GI" selected="true">GI</option>
4842 <option value="HGNC" selected="true">HGNC</option>
4843 <option value="MIM" selected="true">MIM</option>
4844 <option value="MIRBASE" selected="true">MIRBASE</option>
4845 <option value="REFSEQ" selected="true">REFSEQ</option>
4846 <option value="RFAM" selected="true">RFAM</option>
4847 <option value="TAXONOMY" selected="true">TAXONOMY</option>
4848 <option value="UNIPROTKB" selected="true">UNIPROTKB</option>
4849 <option value="assembly" selected="true">assembly</option>
4850 <option value="assembly_grch37" selected="true">assembly_grch37</option>
4851 <option value="assembly_grch38" selected="true">assembly_grch38</option>
4852 <option value="chr_end" selected="true">chr_end</option>
4853 <option value="chr_end_grch37" selected="true">chr_end_grch37</option>
4854 <option value="chr_end_grch38" selected="true">chr_end_grch38</option>
4855 <option value="chr_name" selected="true">chr_name</option>
4856 <option value="chr_name_grch37" selected="true">chr_name_grch37</option>
4857 <option value="chr_name_grch38" selected="true">chr_name_grch38</option>
4858 <option value="chr_start" selected="true">chr_start</option>
4859 <option value="chr_start_grch37" selected="true">chr_start_grch37</option>
4860 <option value="chr_start_grch38" selected="true">chr_start_grch38</option>
4861 <option value="chr_strand" selected="true">chr_strand</option>
4862 <option value="chr_strand_grch37" selected="true">chr_strand_grch37</option>
4863 <option value="chr_strand_grch38" selected="true">chr_strand_grch38</option>
4864 <option value="description" selected="true">description</option>
4865 <option value="domain_source" selected="true">domain_source</option>
4866 <option value="id" selected="true">id</option>
4867 <option value="in_ensembl" selected="true">in_ensembl</option>
4868 <option value="last_modification_date" selected="true">last_modification_date</option>
4869 <option value="name" selected="true">name</option>
4870 <option value="organism" selected="true">organism</option>
4871 <option value="status" selected="true">status</option>
4872 <option value="transcript_source" selected="true">transcript_source</option>
4873 <validator type="no_options" message="Please select at least one field" />
4874 </param>
4875 <repeat name="queries" title="Add a query">
4876 <param name="combination_operation" type="select" label="Combination operation" >
4877 <option value="AND">AND</option>
4878 <option value="OR">OR</option>
4879 <option value="NOT">NOT</option>
4880 </param>
4881 <param name="query_field" type="select" label="Fields" >
4882 <option value="CCDS">CCDS</option>
4883 <option value="ENSEMBL">ENSEMBL</option>
4884 <option value="GENEID">GENEID</option>
4885 <option value="GI">GI</option>
4886 <option value="HGNC">HGNC</option>
4887 <option value="MIM">MIM</option>
4888 <option value="MIRBASE">MIRBASE</option>
4889 <option value="REFSEQ">REFSEQ</option>
4890 <option value="RFAM">RFAM</option>
4891 <option value="TAXONOMY">TAXONOMY</option>
4892 <option value="UNIPROTKB">UNIPROTKB</option>
4893 <option value="creation_date">creation_date</option>
4894 <option value="description">description</option>
4895 <option value="domain_source">domain_source</option>
4896 <option value="id">id</option>
4897 <option value="in_ensembl">in_ensembl</option>
4898 <option value="last_modification_date">last_modification_date</option>
4899 <option value="name">name</option>
4900 <option value="organism">organism</option>
4901 <option value="status">status</option>
4902 <option value="synonym">synonym</option>
4903 </param>
4904 <conditional name="comp_operation">
4905 <param name="operation" type="select" label="Comparison operation" >
4906 <option value="equal">equal</option>
4907 <option value="not">not</option>
4908 <option value="range">range</option>
4909 </param>
4910 <when value="equal">
4911 <param name="query_text" type="text" label="Searched term"/>
4912 </when>
4913 <when value="not">
4914 <param name="query_text" type="text" label="Searched term"/>
4915 <param name="not_query_text" type="text" label="Limiting term"/>
4916 </when>
4917 <when value="range">
4918 <param name="min" type="text" label="From"/>
4919 <param name="max" type="text" label="To"/>
4920 </when>
4921 </conditional>
4922 </repeat>
4923 </when>
4924
4925 <when value="large-assembly">
4926 <param name="fields" type="select" label="Fields to extract" multiple="true">
4927 <option value="DOI" selected="true">DOI</option>
4928 <option value="PUBMED" selected="true">PUBMED</option>
4929 <option value="TAXON" selected="true">TAXON</option>
4930 <option value="acc" selected="true">acc</option>
4931 <option value="description" selected="true">description</option>
4932 <option value="domain_source" selected="true">domain_source</option>
4933 <option value="id" selected="true">id</option>
4934 <validator type="no_options" message="Please select at least one field" />
4935 </param>
4936 <repeat name="queries" title="Add a query">
4937 <param name="combination_operation" type="select" label="Combination operation" >
4938 <option value="AND">AND</option>
4939 <option value="OR">OR</option>
4940 <option value="NOT">NOT</option>
4941 </param>
4942 <param name="query_field" type="select" label="Fields" >
4943 <option value="DOI">DOI</option>
4944 <option value="MD5">MD5</option>
4945 <option value="PROJECT">PROJECT</option>
4946 <option value="PUBMED">PUBMED</option>
4947 <option value="TAXON">TAXON</option>
4948 <option value="acc">acc</option>
4949 <option value="creation_date">creation_date</option>
4950 <option value="data_class">data_class</option>
4951 <option value="description">description</option>
4952 <option value="division">division</option>
4953 <option value="domain_source">domain_source</option>
4954 <option value="id">id</option>
4955 <option value="keywords">keywords</option>
4956 <option value="last_modification_date">last_modification_date</option>
4957 <option value="length">length</option>
4958 <option value="molecule_type">molecule_type</option>
4959 <option value="organism">organism</option>
4960 <option value="organism_classification">organism_classification</option>
4961 <option value="organism_species">organism_species</option>
4962 <option value="references">references</option>
4963 <option value="sequence_version">sequence_version</option>
4964 <option value="topology">topology</option>
4965 </param>
4966 <conditional name="comp_operation">
4967 <param name="operation" type="select" label="Comparison operation" >
4968 <option value="equal">equal</option>
4969 <option value="not">not</option>
4970 <option value="range">range</option>
4971 </param>
4972 <when value="equal">
4973 <param name="query_text" type="text" label="Searched term"/>
4974 </when>
4975 <when value="not">
4976 <param name="query_text" type="text" label="Searched term"/>
4977 <param name="not_query_text" type="text" label="Limiting term"/>
4978 </when>
4979 <when value="range">
4980 <param name="min" type="text" label="From"/>
4981 <param name="max" type="text" label="To"/>
4982 </when>
4983 </conditional>
4984 </repeat>
4985 </when>
4986
4987 <when value="pdbechem">
4988 <param name="fields" type="select" label="Fields to extract" multiple="true">
4989 <option value="acc" selected="true">acc</option>
4990 <option value="description" selected="true">description</option>
4991 <option value="domain_source" selected="true">domain_source</option>
4992 <option value="id" selected="true">id</option>
4993 <validator type="no_options" message="Please select at least one field" />
4994 </param>
4995 <repeat name="queries" title="Add a query">
4996 <param name="combination_operation" type="select" label="Combination operation" >
4997 <option value="AND">AND</option>
4998 <option value="OR">OR</option>
4999 <option value="NOT">NOT</option>
5000 </param>
5001 <param name="query_field" type="select" label="Fields" >
5002 <option value="acc">acc</option>
5003 <option value="comp_synonyms">comp_synonyms</option>
5004 <option value="description">description</option>
5005 <option value="domain_source">domain_source</option>
5006 <option value="formula">formula</option>
5007 <option value="id">id</option>
5008 <option value="inchi">inchi</option>
5009 <option value="non_stereo_smiles">non_stereo_smiles</option>
5010 <option value="stereo_smiles">stereo_smiles</option>
5011 <option value="systematic_name">systematic_name</option>
5012 <option value="weight">weight</option>
5013 </param>
5014 <conditional name="comp_operation">
5015 <param name="operation" type="select" label="Comparison operation" >
5016 <option value="equal">equal</option>
5017 <option value="not">not</option>
5018 <option value="range">range</option>
5019 </param>
5020 <when value="equal">
5021 <param name="query_text" type="text" label="Searched term"/>
5022 </when>
5023 <when value="not">
5024 <param name="query_text" type="text" label="Searched term"/>
5025 <param name="not_query_text" type="text" label="Limiting term"/>
5026 </when>
5027 <when value="range">
5028 <param name="min" type="text" label="From"/>
5029 <param name="max" type="text" label="To"/>
5030 </when>
5031 </conditional>
5032 </repeat>
5033 </when>
5034
5035 <when value="medline">
5036 <param name="fields" type="select" label="Fields to extract" multiple="true">
5037 <option value="MESH_DESCRIPTOR_NAME" selected="true">MESH_DESCRIPTOR_NAME</option>
5038 <option value="ORCID" selected="true">ORCID</option>
5039 <option value="author" selected="true">author</option>
5040 <option value="description" selected="true">description</option>
5041 <option value="display_author" selected="true">display_author</option>
5042 <option value="display_publication_date" selected="true">display_publication_date</option>
5043 <option value="domain_source" selected="true">domain_source</option>
5044 <option value="id" selected="true">id</option>
5045 <option value="issue" selected="true">issue</option>
5046 <option value="journal" selected="true">journal</option>
5047 <option value="name" selected="true">name</option>
5048 <option value="pagination" selected="true">pagination</option>
5049 <option value="publication_date" selected="true">publication_date</option>
5050 <option value="volume" selected="true">volume</option>
5051 <validator type="no_options" message="Please select at least one field" />
5052 </param>
5053 <repeat name="queries" title="Add a query">
5054 <param name="combination_operation" type="select" label="Combination operation" >
5055 <option value="AND">AND</option>
5056 <option value="OR">OR</option>
5057 <option value="NOT">NOT</option>
5058 </param>
5059 <param name="query_field" type="select" label="Fields" >
5060 <option value="MESH_DESCRIPTOR_NAME">MESH_DESCRIPTOR_NAME</option>
5061 <option value="ORCID">ORCID</option>
5062 <option value="affiliation">affiliation</option>
5063 <option value="author">author</option>
5064 <option value="creation_date">creation_date</option>
5065 <option value="description">description</option>
5066 <option value="display_publication_date">display_publication_date</option>
5067 <option value="domain_source">domain_source</option>
5068 <option value="id">id</option>
5069 <option value="issn">issn</option>
5070 <option value="issue">issue</option>
5071 <option value="journal">journal</option>
5072 <option value="keywords">keywords</option>
5073 <option value="last_modification_date">last_modification_date</option>
5074 <option value="mesh_qualifier_name">mesh_qualifier_name</option>
5075 <option value="name">name</option>
5076 <option value="pagination">pagination</option>
5077 <option value="publication_date">publication_date</option>
5078 <option value="volume">volume</option>
5079 </param>
5080 <conditional name="comp_operation">
5081 <param name="operation" type="select" label="Comparison operation" >
5082 <option value="equal">equal</option>
5083 <option value="not">not</option>
5084 <option value="range">range</option>
5085 </param>
5086 <when value="equal">
5087 <param name="query_text" type="text" label="Searched term"/>
5088 </when>
5089 <when value="not">
5090 <param name="query_text" type="text" label="Searched term"/>
5091 <param name="not_query_text" type="text" label="Limiting term"/>
5092 </when>
5093 <when value="range">
5094 <param name="min" type="text" label="From"/>
5095 <param name="max" type="text" label="To"/>
5096 </when>
5097 </conditional>
5098 </repeat>
5099 </when>
5100
5101 <when value="merops_clan">
5102 <param name="fields" type="select" label="Fields to extract" multiple="true">
5103 <option value="PFAM" selected="true">PFAM</option>
5104 <option value="SCOP" selected="true">SCOP</option>
5105 <option value="description" selected="true">description</option>
5106 <option value="domain_source" selected="true">domain_source</option>
5107 <option value="id" selected="true">id</option>
5108 <option value="name" selected="true">name</option>
5109 <validator type="no_options" message="Please select at least one field" />
5110 </param>
5111 <repeat name="queries" title="Add a query">
5112 <param name="combination_operation" type="select" label="Combination operation" >
5113 <option value="AND">AND</option>
5114 <option value="OR">OR</option>
5115 <option value="NOT">NOT</option>
5116 </param>
5117 <param name="query_field" type="select" label="Fields" >
5118 <option value="PFAM">PFAM</option>
5119 <option value="SCOP">SCOP</option>
5120 <option value="acc">acc</option>
5121 <option value="activation_mechanism">activation_mechanism</option>
5122 <option value="catalytic_mechanism">catalytic_mechanism</option>
5123 <option value="content">content</option>
5124 <option value="description">description</option>
5125 <option value="distribution">distribution</option>
5126 <option value="domain_source">domain_source</option>
5127 <option value="evidence">evidence</option>
5128 <option value="evolution">evolution</option>
5129 <option value="homologous_nonpeptidase">homologous_nonpeptidase</option>
5130 <option value="id">id</option>
5131 <option value="inhibitors">inhibitors</option>
5132 <option value="name">name</option>
5133 <option value="peptidase_activity">peptidase_activity</option>
5134 <option value="protein_fold">protein_fold</option>
5135 <option value="published">published</option>
5136 <option value="reviews">reviews</option>
5137 <option value="subclans">subclans</option>
5138 </param>
5139 <conditional name="comp_operation">
5140 <param name="operation" type="select" label="Comparison operation" >
5141 <option value="equal">equal</option>
5142 <option value="not">not</option>
5143 <option value="range">range</option>
5144 </param>
5145 <when value="equal">
5146 <param name="query_text" type="text" label="Searched term"/>
5147 </when>
5148 <when value="not">
5149 <param name="query_text" type="text" label="Searched term"/>
5150 <param name="not_query_text" type="text" label="Limiting term"/>
5151 </when>
5152 <when value="range">
5153 <param name="min" type="text" label="From"/>
5154 <param name="max" type="text" label="To"/>
5155 </when>
5156 </conditional>
5157 </repeat>
5158 </when>
5159
5160 <when value="merops_family">
5161 <param name="fields" type="select" label="Fields to extract" multiple="true">
5162 <option value="CATH" selected="true">CATH</option>
5163 <option value="HOMSTRAD" selected="true">HOMSTRAD</option>
5164 <option value="HSSP" selected="true">HSSP</option>
5165 <option value="INTERPRO" selected="true">INTERPRO</option>
5166 <option value="MEROPS_CLAN" selected="true">MEROPS_CLAN</option>
5167 <option value="PFAM" selected="true">PFAM</option>
5168 <option value="SCOP" selected="true">SCOP</option>
5169 <option value="description" selected="true">description</option>
5170 <option value="domain_source" selected="true">domain_source</option>
5171 <option value="id" selected="true">id</option>
5172 <option value="name" selected="true">name</option>
5173 <validator type="no_options" message="Please select at least one field" />
5174 </param>
5175 <repeat name="queries" title="Add a query">
5176 <param name="combination_operation" type="select" label="Combination operation" >
5177 <option value="AND">AND</option>
5178 <option value="OR">OR</option>
5179 <option value="NOT">NOT</option>
5180 </param>
5181 <param name="query_field" type="select" label="Fields" >
5182 <option value="CATH">CATH</option>
5183 <option value="HOMSTRAD">HOMSTRAD</option>
5184 <option value="HSSP">HSSP</option>
5185 <option value="INTERPRO">INTERPRO</option>
5186 <option value="MEROPS_CLAN">MEROPS_CLAN</option>
5187 <option value="PFAM">PFAM</option>
5188 <option value="SCOP">SCOP</option>
5189 <option value="acc">acc</option>
5190 <option value="active_site">active_site</option>
5191 <option value="activities_and_specificities">activities_and_specificities</option>
5192 <option value="biological_functions">biological_functions</option>
5193 <option value="biotech_aspects">biotech_aspects</option>
5194 <option value="clan_assignment">clan_assignment</option>
5195 <option value="content">content</option>
5196 <option value="description">description</option>
5197 <option value="distribution">distribution</option>
5198 <option value="domain_source">domain_source</option>
5199 <option value="history">history</option>
5200 <option value="id">id</option>
5201 <option value="inhibitors">inhibitors</option>
5202 <option value="mechanism">mechanism</option>
5203 <option value="molecular_structure">molecular_structure</option>
5204 <option value="name">name</option>
5205 <option value="peptidases_inhibited">peptidases_inhibited</option>
5206 <option value="published">published</option>
5207 <option value="reactive_site">reactive_site</option>
5208 <option value="reviews">reviews</option>
5209 <option value="subfamilies">subfamilies</option>
5210 </param>
5211 <conditional name="comp_operation">
5212 <param name="operation" type="select" label="Comparison operation" >
5213 <option value="equal">equal</option>
5214 <option value="not">not</option>
5215 <option value="range">range</option>
5216 </param>
5217 <when value="equal">
5218 <param name="query_text" type="text" label="Searched term"/>
5219 </when>
5220 <when value="not">
5221 <param name="query_text" type="text" label="Searched term"/>
5222 <param name="not_query_text" type="text" label="Limiting term"/>
5223 </when>
5224 <when value="range">
5225 <param name="min" type="text" label="From"/>
5226 <param name="max" type="text" label="To"/>
5227 </when>
5228 </conditional>
5229 </repeat>
5230 </when>
5231
5232 <when value="merops_id">
5233 <param name="fields" type="select" label="Fields to extract" multiple="true">
5234 <option value="EMBL" selected="true">EMBL</option>
5235 <option value="EMBLCDS" selected="true">EMBLCDS</option>
5236 <option value="ENSEMBL" selected="true">ENSEMBL</option>
5237 <option value="MEROPS_CLAN" selected="true">MEROPS_CLAN</option>
5238 <option value="MEROPS_FAMILY" selected="true">MEROPS_FAMILY</option>
5239 <option value="PDB" selected="true">PDB</option>
5240 <option value="PIR" selected="true">PIR</option>
5241 <option value="REFSEQ" selected="true">REFSEQ</option>
5242 <option value="TAXONOMY" selected="true">TAXONOMY</option>
5243 <option value="UNIPARC" selected="true">UNIPARC</option>
5244 <option value="UNIPROT" selected="true">UNIPROT</option>
5245 <option value="description" selected="true">description</option>
5246 <option value="domain_source" selected="true">domain_source</option>
5247 <option value="id" selected="true">id</option>
5248 <option value="name" selected="true">name</option>
5249 <validator type="no_options" message="Please select at least one field" />
5250 </param>
5251 <repeat name="queries" title="Add a query">
5252 <param name="combination_operation" type="select" label="Combination operation" >
5253 <option value="AND">AND</option>
5254 <option value="OR">OR</option>
5255 <option value="NOT">NOT</option>
5256 </param>
5257 <param name="query_field" type="select" label="Fields" >
5258 <option value="EMBL">EMBL</option>
5259 <option value="EMBLCDS">EMBLCDS</option>
5260 <option value="ENSEMBL">ENSEMBL</option>
5261 <option value="MEROPS_CLAN">MEROPS_CLAN</option>
5262 <option value="MEROPS_FAMILY">MEROPS_FAMILY</option>
5263 <option value="PDB">PDB</option>
5264 <option value="PIR">PIR</option>
5265 <option value="REFSEQ">REFSEQ</option>
5266 <option value="TAXONOMY">TAXONOMY</option>
5267 <option value="UNIPARC">UNIPARC</option>
5268 <option value="UNIPROT">UNIPROT</option>
5269 <option value="acc">acc</option>
5270 <option value="activity">activity</option>
5271 <option value="biotech">biotech</option>
5272 <option value="common_name">common_name</option>
5273 <option value="description">description</option>
5274 <option value="distinguishing_features">distinguishing_features</option>
5275 <option value="domain_source">domain_source</option>
5276 <option value="gene_name">gene_name</option>
5277 <option value="history">history</option>
5278 <option value="id">id</option>
5279 <option value="id_noversion">id_noversion</option>
5280 <option value="inhibitors">inhibitors</option>
5281 <option value="knockout">knockout</option>
5282 <option value="name">name</option>
5283 <option value="other_name">other_name</option>
5284 <option value="pharma">pharma</option>
5285 <option value="physiology">physiology</option>
5286 <option value="smi">smi</option>
5287 <option value="species">species</option>
5288 <option value="specificity">specificity</option>
5289 <option value="structure">structure</option>
5290 </param>
5291 <conditional name="comp_operation">
5292 <param name="operation" type="select" label="Comparison operation" >
5293 <option value="equal">equal</option>
5294 <option value="not">not</option>
5295 <option value="range">range</option>
5296 </param>
5297 <when value="equal">
5298 <param name="query_text" type="text" label="Searched term"/>
5299 </when>
5300 <when value="not">
5301 <param name="query_text" type="text" label="Searched term"/>
5302 <param name="not_query_text" type="text" label="Limiting term"/>
5303 </when>
5304 <when value="range">
5305 <param name="min" type="text" label="From"/>
5306 <param name="max" type="text" label="To"/>
5307 </when>
5308 </conditional>
5309 </repeat>
5310 </when>
5311
5312 <when value="mesh">
5313 <param name="fields" type="select" label="Fields to extract" multiple="true">
5314 <option value="MESH_PHARMA" selected="true">MESH_PHARMA</option>
5315 <option value="domain_source" selected="true">domain_source</option>
5316 <option value="id" selected="true">id</option>
5317 <option value="name" selected="true">name</option>
5318 <validator type="no_options" message="Please select at least one field" />
5319 </param>
5320 <repeat name="queries" title="Add a query">
5321 <param name="combination_operation" type="select" label="Combination operation" >
5322 <option value="AND">AND</option>
5323 <option value="OR">OR</option>
5324 <option value="NOT">NOT</option>
5325 </param>
5326 <param name="query_field" type="select" label="Fields" >
5327 <option value="MESH_PHARMA">MESH_PHARMA</option>
5328 <option value="annotation">annotation</option>
5329 <option value="creation_date">creation_date</option>
5330 <option value="domain_source">domain_source</option>
5331 <option value="established_date">established_date</option>
5332 <option value="historynote">historynote</option>
5333 <option value="id">id</option>
5334 <option value="last_modification_date">last_modification_date</option>
5335 <option value="name">name</option>
5336 <option value="onlinenote">onlinenote</option>
5337 <option value="previousindexing">previousindexing</option>
5338 <option value="publicmeshnote">publicmeshnote</option>
5339 <option value="qualifierabbr">qualifierabbr</option>
5340 <option value="qualifiername">qualifiername</option>
5341 <option value="qualifierui">qualifierui</option>
5342 </param>
5343 <conditional name="comp_operation">
5344 <param name="operation" type="select" label="Comparison operation" >
5345 <option value="equal">equal</option>
5346 <option value="not">not</option>
5347 <option value="range">range</option>
5348 </param>
5349 <when value="equal">
5350 <param name="query_text" type="text" label="Searched term"/>
5351 </when>
5352 <when value="not">
5353 <param name="query_text" type="text" label="Searched term"/>
5354 <param name="not_query_text" type="text" label="Limiting term"/>
5355 </when>
5356 <when value="range">
5357 <param name="min" type="text" label="From"/>
5358 <param name="max" type="text" label="To"/>
5359 </when>
5360 </conditional>
5361 </repeat>
5362 </when>
5363
5364 <when value="massive">
5365 <param name="fields" type="select" label="Fields to extract" multiple="true">
5366 <option value="PUBMED" selected="true">PUBMED</option>
5367 <option value="TAXONOMY" selected="true">TAXONOMY</option>
5368 <option value="dataset_file" selected="true">dataset_file</option>
5369 <option value="description" selected="true">description</option>
5370 <option value="domain_source" selected="true">domain_source</option>
5371 <option value="full_dataset_link" selected="true">full_dataset_link</option>
5372 <option value="id" selected="true">id</option>
5373 <option value="instrument_platform" selected="true">instrument_platform</option>
5374 <option value="modification" selected="true">modification</option>
5375 <option value="name" selected="true">name</option>
5376 <option value="omics_type" selected="true">omics_type</option>
5377 <option value="species" selected="true">species</option>
5378 <option value="submission_date" selected="true">submission_date</option>
5379 <option value="technology_type" selected="true">technology_type</option>
5380 <validator type="no_options" message="Please select at least one field" />
5381 </param>
5382 <repeat name="queries" title="Add a query">
5383 <param name="combination_operation" type="select" label="Combination operation" >
5384 <option value="AND">AND</option>
5385 <option value="OR">OR</option>
5386 <option value="NOT">NOT</option>
5387 </param>
5388 <param name="query_field" type="select" label="Fields" >
5389 <option value="PUBMED">PUBMED</option>
5390 <option value="TAXONOMY">TAXONOMY</option>
5391 <option value="acc">acc</option>
5392 <option value="curator_keywords">curator_keywords</option>
5393 <option value="description">description</option>
5394 <option value="description_synonyms">description_synonyms</option>
5395 <option value="domain_source">domain_source</option>
5396 <option value="full_dataset_link">full_dataset_link</option>
5397 <option value="id">id</option>
5398 <option value="instrument_platform">instrument_platform</option>
5399 <option value="modification">modification</option>
5400 <option value="name">name</option>
5401 <option value="name_synonyms">name_synonyms</option>
5402 <option value="omics_type">omics_type</option>
5403 <option value="repository">repository</option>
5404 <option value="species">species</option>
5405 <option value="submission_date">submission_date</option>
5406 <option value="submitter">submitter</option>
5407 <option value="technology_type">technology_type</option>
5408 </param>
5409 <conditional name="comp_operation">
5410 <param name="operation" type="select" label="Comparison operation" >
5411 <option value="equal">equal</option>
5412 <option value="not">not</option>
5413 <option value="range">range</option>
5414 </param>
5415 <when value="equal">
5416 <param name="query_text" type="text" label="Searched term"/>
5417 </when>
5418 <when value="not">
5419 <param name="query_text" type="text" label="Searched term"/>
5420 <param name="not_query_text" type="text" label="Limiting term"/>
5421 </when>
5422 <when value="range">
5423 <param name="min" type="text" label="From"/>
5424 <param name="max" type="text" label="To"/>
5425 </when>
5426 </conditional>
5427 </repeat>
5428 </when>
5429
5430 <when value="metabolights">
5431 <param name="fields" type="select" label="Fields to extract" multiple="true">
5432 <option value="CHEBI" selected="true">CHEBI</option>
5433 <option value="HMDB" selected="true">HMDB</option>
5434 <option value="KEGG" selected="true">KEGG</option>
5435 <option value="METABOLIGHTS" selected="true">METABOLIGHTS</option>
5436 <option value="MTBLS" selected="true">MTBLS</option>
5437 <option value="PUBCHEM" selected="true">PUBCHEM</option>
5438 <option value="PUBMED" selected="true">PUBMED</option>
5439 <option value="dataset_file" selected="true">dataset_file</option>
5440 <option value="description" selected="true">description</option>
5441 <option value="domain_source" selected="true">domain_source</option>
5442 <option value="full_dataset_link" selected="true">full_dataset_link</option>
5443 <option value="id" selected="true">id</option>
5444 <option value="instrument_platform" selected="true">instrument_platform</option>
5445 <option value="name" selected="true">name</option>
5446 <option value="omics_type" selected="true">omics_type</option>
5447 <option value="publication" selected="true">publication</option>
5448 <option value="publication_date" selected="true">publication_date</option>
5449 <option value="study_design" selected="true">study_design</option>
5450 <option value="study_factor" selected="true">study_factor</option>
5451 <option value="study_status" selected="true">study_status</option>
5452 <option value="submission_date" selected="true">submission_date</option>
5453 <option value="technology_type" selected="true">technology_type</option>
5454 <validator type="no_options" message="Please select at least one field" />
5455 </param>
5456 <repeat name="queries" title="Add a query">
5457 <param name="combination_operation" type="select" label="Combination operation" >
5458 <option value="AND">AND</option>
5459 <option value="OR">OR</option>
5460 <option value="NOT">NOT</option>
5461 </param>
5462 <param name="query_field" type="select" label="Fields" >
5463 <option value="3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol">3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol</option>
5464 <option value="3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol">3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol</option>
5465 <option value="3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol">3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol</option>
5466 <option value="3d_maldi_imaging_ms_dataset_of_a_mouse_pancreas_protocol">3d_maldi_imaging_ms_dataset_of_a_mouse_pancreas_protocol</option>
5467 <option value="3d_maldi_imaging_ms_datasets_of_cultured_microbial_colonies_in_a_time_course_experiment_protocol">3d_maldi_imaging_ms_datasets_of_cultured_microbial_colonies_in_a_time_course_experiment_protocol</option>
5468 <option value="CHEBI">CHEBI</option>
5469 <option value="HMDB">HMDB</option>
5470 <option value="KEGG">KEGG</option>
5471 <option value="METABOLIGHTS">METABOLIGHTS</option>
5472 <option value="MTBLS">MTBLS</option>
5473 <option value="PUBCHEM">PUBCHEM</option>
5474 <option value="PUBMED">PUBMED</option>
5475 <option value="apodisation_zero_filling_and_fourier_transformation_protocol">apodisation_zero_filling_and_fourier_transformation_protocol</option>
5476 <option value="author">author</option>
5477 <option value="averaging_of_transients_protocol">averaging_of_transients_protocol</option>
5478 <option value="batch_correction_protocol">batch_correction_protocol</option>
5479 <option value="chromatography_protocol">chromatography_protocol</option>
5480 <option value="data_analysis_protocol">data_analysis_protocol</option>
5481 <option value="data_normalization_protocol">data_normalization_protocol</option>
5482 <option value="data_transformation_protocol">data_transformation_protocol</option>
5483 <option value="description">description</option>
5484 <option value="domain_source">domain_source</option>
5485 <option value="extraction_protocol">extraction_protocol</option>
5486 <option value="formula">formula</option>
5487 <option value="full_dataset_link">full_dataset_link</option>
5488 <option value="gc_ms_protocol">gc_ms_protocol</option>
5489 <option value="glog_transformation_protocol">glog_transformation_protocol</option>
5490 <option value="growth_conditions_protocol">growth_conditions_protocol</option>
5491 <option value="histology_protocol">histology_protocol</option>
5492 <option value="id">id</option>
5493 <option value="inchi">inchi</option>
5494 <option value="instrument_platform">instrument_platform</option>
5495 <option value="iupac">iupac</option>
5496 <option value="labeling_protocol">labeling_protocol</option>
5497 <option value="lc_ms_protocol">lc_ms_protocol</option>
5498 <option value="mass_calibration_and_sim_stitching_protocol">mass_calibration_and_sim_stitching_protocol</option>
5499 <option value="mass_spec_protocol">mass_spec_protocol</option>
5500 <option value="metabolite_id_protocol">metabolite_id_protocol</option>
5501 <option value="metabolite_name">metabolite_name</option>
5502 <option value="missing_values_imputation__knn_protocol">missing_values_imputation__knn_protocol</option>
5503 <option value="name">name</option>
5504 <option value="nmr_assay_protocol">nmr_assay_protocol</option>
5505 <option value="nmr_spec_protocol">nmr_spec_protocol</option>
5506 <option value="omics_type">omics_type</option>
5507 <option value="organism">organism</option>
5508 <option value="organism_group">organism_group</option>
5509 <option value="organism_part">organism_part</option>
5510 <option value="pqn_normalisation_protocol">pqn_normalisation_protocol</option>
5511 <option value="preparation_protocol">preparation_protocol</option>
5512 <option value="publication">publication</option>
5513 <option value="publication_date">publication_date</option>
5514 <option value="replicate_filtering_protocol">replicate_filtering_protocol</option>
5515 <option value="repository">repository</option>
5516 <option value="sample_collection_protocol">sample_collection_protocol</option>
5517 <option value="sample_filtering_including_tic_filtering_blank_filtering_and_missing_value_filtering_protocol">sample_filtering_including_tic_filtering_blank_filtering_and_missing_value_filtering_protocol</option>
5518 <option value="software_processing_protocol">software_processing_protocol</option>
5519 <option value="spectral_cleaning_protocol">spectral_cleaning_protocol</option>
5520 <option value="study">study</option>
5521 <option value="study_design">study_design</option>
5522 <option value="study_factor">study_factor</option>
5523 <option value="study_status">study_status</option>
5524 <option value="submission_date">submission_date</option>
5525 <option value="submitter">submitter</option>
5526 <option value="submitter_affiliation">submitter_affiliation</option>
5527 <option value="submitter_email">submitter_email</option>
5528 <option value="technology_type">technology_type</option>
5529 </param>
5530 <conditional name="comp_operation">
5531 <param name="operation" type="select" label="Comparison operation" >
5532 <option value="equal">equal</option>
5533 <option value="not">not</option>
5534 <option value="range">range</option>
5535 </param>
5536 <when value="equal">
5537 <param name="query_text" type="text" label="Searched term"/>
5538 </when>
5539 <when value="not">
5540 <param name="query_text" type="text" label="Searched term"/>
5541 <param name="not_query_text" type="text" label="Limiting term"/>
5542 </when>
5543 <when value="range">
5544 <param name="min" type="text" label="From"/>
5545 <param name="max" type="text" label="To"/>
5546 </when>
5547 </conditional>
5548 </repeat>
5549 </when>
5550
5551 <when value="metabolights_dataset">
5552 <param name="fields" type="select" label="Fields to extract" multiple="true">
5553 <option value="CHEBI" selected="true">CHEBI</option>
5554 <option value="HMDB" selected="true">HMDB</option>
5555 <option value="KEGG" selected="true">KEGG</option>
5556 <option value="METABOLIGHTS" selected="true">METABOLIGHTS</option>
5557 <option value="PUBCHEM" selected="true">PUBCHEM</option>
5558 <option value="PUBMED" selected="true">PUBMED</option>
5559 <option value="dataset_file" selected="true">dataset_file</option>
5560 <option value="description" selected="true">description</option>
5561 <option value="domain_source" selected="true">domain_source</option>
5562 <option value="full_dataset_link" selected="true">full_dataset_link</option>
5563 <option value="id" selected="true">id</option>
5564 <option value="instrument_platform" selected="true">instrument_platform</option>
5565 <option value="name" selected="true">name</option>
5566 <option value="omics_type" selected="true">omics_type</option>
5567 <option value="publication" selected="true">publication</option>
5568 <option value="publication_date" selected="true">publication_date</option>
5569 <option value="study_design" selected="true">study_design</option>
5570 <option value="study_factor" selected="true">study_factor</option>
5571 <option value="study_status" selected="true">study_status</option>
5572 <option value="submission_date" selected="true">submission_date</option>
5573 <option value="technology_type" selected="true">technology_type</option>
5574 <validator type="no_options" message="Please select at least one field" />
5575 </param>
5576 <repeat name="queries" title="Add a query">
5577 <param name="combination_operation" type="select" label="Combination operation" >
5578 <option value="AND">AND</option>
5579 <option value="OR">OR</option>
5580 <option value="NOT">NOT</option>
5581 </param>
5582 <param name="query_field" type="select" label="Fields" >
5583 <option value="3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol">3d_desi_imaging_ms_dataset_of_a_human_colorectal_adenocarcinoma_protocol</option>
5584 <option value="3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol">3d_maldi_imaging_ms_dataset_of_a_human_oral_squamous_cell_carcinoma_protocol</option>
5585 <option value="3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol">3d_maldi_imaging_ms_dataset_of_a_mouse_kidney_protocol</option>
5586 <option value="3d_maldi_imaging_ms_dataset_of_a_mouse_pancreas_protocol">3d_maldi_imaging_ms_dataset_of_a_mouse_pancreas_protocol</option>
5587 <option value="3d_maldi_imaging_ms_datasets_of_cultured_microbial_colonies_in_a_time_course_experiment_protocol">3d_maldi_imaging_ms_datasets_of_cultured_microbial_colonies_in_a_time_course_experiment_protocol</option>
5588 <option value="CHEBI">CHEBI</option>
5589 <option value="HMDB">HMDB</option>
5590 <option value="KEGG">KEGG</option>
5591 <option value="METABOLIGHTS">METABOLIGHTS</option>
5592 <option value="PUBCHEM">PUBCHEM</option>
5593 <option value="PUBMED">PUBMED</option>
5594 <option value="acc">acc</option>
5595 <option value="apodisation_zero_filling_and_fourier_transformation_protocol">apodisation_zero_filling_and_fourier_transformation_protocol</option>
5596 <option value="author">author</option>
5597 <option value="averaging_of_transients_protocol">averaging_of_transients_protocol</option>
5598 <option value="batch_correction_protocol">batch_correction_protocol</option>
5599 <option value="chromatography_protocol">chromatography_protocol</option>
5600 <option value="data_analysis_protocol">data_analysis_protocol</option>
5601 <option value="data_normalization_protocol">data_normalization_protocol</option>
5602 <option value="data_transformation_protocol">data_transformation_protocol</option>
5603 <option value="derivatisation_protocol">derivatisation_protocol</option>
5604 <option value="description">description</option>
5605 <option value="description_synonyms">description_synonyms</option>
5606 <option value="domain_source">domain_source</option>
5607 <option value="extraction_protocol">extraction_protocol</option>
5608 <option value="full_dataset_link">full_dataset_link</option>
5609 <option value="gc_ms_protocol">gc_ms_protocol</option>
5610 <option value="glog_transformation_protocol">glog_transformation_protocol</option>
5611 <option value="growth_conditions_protocol">growth_conditions_protocol</option>
5612 <option value="histology_protocol">histology_protocol</option>
5613 <option value="id">id</option>
5614 <option value="instrument_platform">instrument_platform</option>
5615 <option value="labeling_protocol">labeling_protocol</option>
5616 <option value="lc_ms_protocol">lc_ms_protocol</option>
5617 <option value="mass_calibration_and_sim_stitching_protocol">mass_calibration_and_sim_stitching_protocol</option>
5618 <option value="mass_spec_protocol">mass_spec_protocol</option>
5619 <option value="metabolite_id_protocol">metabolite_id_protocol</option>
5620 <option value="metabolite_name">metabolite_name</option>
5621 <option value="missing_values_imputation__knn_protocol">missing_values_imputation__knn_protocol</option>
5622 <option value="name">name</option>
5623 <option value="name_synonyms">name_synonyms</option>
5624 <option value="nmr_assay_protocol">nmr_assay_protocol</option>
5625 <option value="nmr_spec_protocol">nmr_spec_protocol</option>
5626 <option value="omics_type">omics_type</option>
5627 <option value="organism">organism</option>
5628 <option value="organism_part">organism_part</option>
5629 <option value="pqn_normalisation_protocol">pqn_normalisation_protocol</option>
5630 <option value="preparation_protocol">preparation_protocol</option>
5631 <option value="publication">publication</option>
5632 <option value="publication_date">publication_date</option>
5633 <option value="pubmed_abstract">pubmed_abstract</option>
5634 <option value="pubmed_abstract_synonyms">pubmed_abstract_synonyms</option>
5635 <option value="pubmed_authors">pubmed_authors</option>
5636 <option value="pubmed_title">pubmed_title</option>
5637 <option value="pubmed_title_synonyms">pubmed_title_synonyms</option>
5638 <option value="replicate_filtering_protocol">replicate_filtering_protocol</option>
5639 <option value="repository">repository</option>
5640 <option value="sample_collection_protocol">sample_collection_protocol</option>
5641 <option value="sample_filtering_including_tic_filtering_blank_filtering_and_missing_value_filtering_protocol">sample_filtering_including_tic_filtering_blank_filtering_and_missing_value_filtering_protocol</option>
5642 <option value="software_processing_protocol">software_processing_protocol</option>
5643 <option value="spectral_cleaning_protocol">spectral_cleaning_protocol</option>
5644 <option value="study_design">study_design</option>
5645 <option value="study_factor">study_factor</option>
5646 <option value="study_status">study_status</option>
5647 <option value="submission_date">submission_date</option>
5648 <option value="submitter">submitter</option>
5649 <option value="submitter_affiliation">submitter_affiliation</option>
5650 <option value="submitter_email">submitter_email</option>
5651 <option value="technology_type">technology_type</option>
5652 </param>
5653 <conditional name="comp_operation">
5654 <param name="operation" type="select" label="Comparison operation" >
5655 <option value="equal">equal</option>
5656 <option value="not">not</option>
5657 <option value="range">range</option>
5658 </param>
5659 <when value="equal">
5660 <param name="query_text" type="text" label="Searched term"/>
5661 </when>
5662 <when value="not">
5663 <param name="query_text" type="text" label="Searched term"/>
5664 <param name="not_query_text" type="text" label="Limiting term"/>
5665 </when>
5666 <when value="range">
5667 <param name="min" type="text" label="From"/>
5668 <param name="max" type="text" label="To"/>
5669 </when>
5670 </conditional>
5671 </repeat>
5672 </when>
5673
5674 <when value="metabolome_express">
5675 <param name="fields" type="select" label="Fields to extract" multiple="true">
5676 <option value="CHEBI" selected="true">CHEBI</option>
5677 <option value="PUBMED" selected="true">PUBMED</option>
5678 <option value="description" selected="true">description</option>
5679 <option value="domain_source" selected="true">domain_source</option>
5680 <option value="full_dataset_link" selected="true">full_dataset_link</option>
5681 <option value="id" selected="true">id</option>
5682 <option value="instrument_platform" selected="true">instrument_platform</option>
5683 <option value="name" selected="true">name</option>
5684 <option value="omics_type" selected="true">omics_type</option>
5685 <option value="publication" selected="true">publication</option>
5686 <option value="publication_date" selected="true">publication_date</option>
5687 <option value="study_factor" selected="true">study_factor</option>
5688 <validator type="no_options" message="Please select at least one field" />
5689 </param>
5690 <repeat name="queries" title="Add a query">
5691 <param name="combination_operation" type="select" label="Combination operation" >
5692 <option value="AND">AND</option>
5693 <option value="OR">OR</option>
5694 <option value="NOT">NOT</option>
5695 </param>
5696 <param name="query_field" type="select" label="Fields" >
5697 <option value="CHEBI">CHEBI</option>
5698 <option value="PUBMED">PUBMED</option>
5699 <option value="acc">acc</option>
5700 <option value="class_comparison">class_comparison</option>
5701 <option value="corresponding_author_email">corresponding_author_email</option>
5702 <option value="corresponding_author_name">corresponding_author_name</option>
5703 <option value="corresponding_author_scopusid">corresponding_author_scopusid</option>
5704 <option value="description">description</option>
5705 <option value="description_synonyms">description_synonyms</option>
5706 <option value="domain_source">domain_source</option>
5707 <option value="full_dataset_link">full_dataset_link</option>
5708 <option value="genotypeid">genotypeid</option>
5709 <option value="genotypeid_systematic">genotypeid_systematic</option>
5710 <option value="id">id</option>
5711 <option value="instrument_platform">instrument_platform</option>
5712 <option value="kingdom">kingdom</option>
5713 <option value="metabolite_name">metabolite_name</option>
5714 <option value="name">name</option>
5715 <option value="name_synonyms">name_synonyms</option>
5716 <option value="omics_type">omics_type</option>
5717 <option value="organism">organism</option>
5718 <option value="organism_part">organism_part</option>
5719 <option value="perturbationtype_level1">perturbationtype_level1</option>
5720 <option value="perturbationtype_level2">perturbationtype_level2</option>
5721 <option value="perturbationtype_level3">perturbationtype_level3</option>
5722 <option value="perturbed_gene">perturbed_gene</option>
5723 <option value="publication">publication</option>
5724 <option value="publication_date">publication_date</option>
5725 <option value="pubmed_abstract">pubmed_abstract</option>
5726 <option value="pubmed_abstract_synonyms">pubmed_abstract_synonyms</option>
5727 <option value="pubmed_authors">pubmed_authors</option>
5728 <option value="pubmed_title">pubmed_title</option>
5729 <option value="pubmed_title_synonyms">pubmed_title_synonyms</option>
5730 <option value="repository">repository</option>
5731 <option value="study_factor">study_factor</option>
5732 <option value="submitter">submitter</option>
5733 <option value="submitter_affiliation">submitter_affiliation</option>
5734 <option value="submitter_email">submitter_email</option>
5735 <option value="treatmentid">treatmentid</option>
5736 </param>
5737 <conditional name="comp_operation">
5738 <param name="operation" type="select" label="Comparison operation" >
5739 <option value="equal">equal</option>
5740 <option value="not">not</option>
5741 <option value="range">range</option>
5742 </param>
5743 <when value="equal">
5744 <param name="query_text" type="text" label="Searched term"/>
5745 </when>
5746 <when value="not">
5747 <param name="query_text" type="text" label="Searched term"/>
5748 <param name="not_query_text" type="text" label="Limiting term"/>
5749 </when>
5750 <when value="range">
5751 <param name="min" type="text" label="From"/>
5752 <param name="max" type="text" label="To"/>
5753 </when>
5754 </conditional>
5755 </repeat>
5756 </when>
5757
5758 <when value="metabolomics_workbench">
5759 <param name="fields" type="select" label="Fields to extract" multiple="true">
5760 <option value="CHEBI" selected="true">CHEBI</option>
5761 <option value="PUBMED" selected="true">PUBMED</option>
5762 <option value="TAXONOMY" selected="true">TAXONOMY</option>
5763 <option value="data_protocol" selected="true">data_protocol</option>
5764 <option value="description" selected="true">description</option>
5765 <option value="disease" selected="true">disease</option>
5766 <option value="domain_source" selected="true">domain_source</option>
5767 <option value="full_dataset_link" selected="true">full_dataset_link</option>
5768 <option value="id" selected="true">id</option>
5769 <option value="instrument_platform" selected="true">instrument_platform</option>
5770 <option value="name" selected="true">name</option>
5771 <option value="omics_type" selected="true">omics_type</option>
5772 <option value="species" selected="true">species</option>
5773 <option value="study_factor" selected="true">study_factor</option>
5774 <option value="submission_date" selected="true">submission_date</option>
5775 <option value="technology_type" selected="true">technology_type</option>
5776 <option value="tissue" selected="true">tissue</option>
5777 <validator type="no_options" message="Please select at least one field" />
5778 </param>
5779 <repeat name="queries" title="Add a query">
5780 <param name="combination_operation" type="select" label="Combination operation" >
5781 <option value="AND">AND</option>
5782 <option value="OR">OR</option>
5783 <option value="NOT">NOT</option>
5784 </param>
5785 <param name="query_field" type="select" label="Fields" >
5786 <option value="CHEBI">CHEBI</option>
5787 <option value="PUBMED">PUBMED</option>
5788 <option value="TAXONOMY">TAXONOMY</option>
5789 <option value="acc">acc</option>
5790 <option value="data_protocol">data_protocol</option>
5791 <option value="data_synonyms">data_synonyms</option>
5792 <option value="description">description</option>
5793 <option value="description_synonyms">description_synonyms</option>
5794 <option value="disease">disease</option>
5795 <option value="domain_source">domain_source</option>
5796 <option value="full_dataset_link">full_dataset_link</option>
5797 <option value="id">id</option>
5798 <option value="instrument_platform">instrument_platform</option>
5799 <option value="metabolite_name">metabolite_name</option>
5800 <option value="name">name</option>
5801 <option value="name_synonyms">name_synonyms</option>
5802 <option value="omics_type">omics_type</option>
5803 <option value="pubchem_id">pubchem_id</option>
5804 <option value="pubmed_abstract">pubmed_abstract</option>
5805 <option value="pubmed_authors">pubmed_authors</option>
5806 <option value="pubmed_title">pubmed_title</option>
5807 <option value="repository">repository</option>
5808 <option value="species">species</option>
5809 <option value="study_factor">study_factor</option>
5810 <option value="submission_date">submission_date</option>
5811 <option value="submitter">submitter</option>
5812 <option value="submitter_affiliation">submitter_affiliation</option>
5813 <option value="submitter_mail">submitter_mail</option>
5814 <option value="technology_type">technology_type</option>
5815 <option value="tissue">tissue</option>
5816 </param>
5817 <conditional name="comp_operation">
5818 <param name="operation" type="select" label="Comparison operation" >
5819 <option value="equal">equal</option>
5820 <option value="not">not</option>
5821 <option value="range">range</option>
5822 </param>
5823 <when value="equal">
5824 <param name="query_text" type="text" label="Searched term"/>
5825 </when>
5826 <when value="not">
5827 <param name="query_text" type="text" label="Searched term"/>
5828 <param name="not_query_text" type="text" label="Limiting term"/>
5829 </when>
5830 <when value="range">
5831 <param name="min" type="text" label="From"/>
5832 <param name="max" type="text" label="To"/>
5833 </when>
5834 </conditional>
5835 </repeat>
5836 </when>
5837
5838 <when value="hmmer_hmm">
5839 <param name="fields" type="select" label="Fields to extract" multiple="true">
5840 <option value="content" selected="true">content</option>
5841 <option value="domain_source" selected="true">domain_source</option>
5842 <option value="id" selected="true">id</option>
5843 <validator type="no_options" message="Please select at least one field" />
5844 </param>
5845 <repeat name="queries" title="Add a query">
5846 <param name="combination_operation" type="select" label="Combination operation" >
5847 <option value="AND">AND</option>
5848 <option value="OR">OR</option>
5849 <option value="NOT">NOT</option>
5850 </param>
5851 <param name="query_field" type="select" label="Fields" >
5852 <option value="domain_source">domain_source</option>
5853 <option value="id">id</option>
5854 </param>
5855 <conditional name="comp_operation">
5856 <param name="operation" type="select" label="Comparison operation" >
5857 <option value="equal">equal</option>
5858 <option value="not">not</option>
5859 <option value="range">range</option>
5860 </param>
5861 <when value="equal">
5862 <param name="query_text" type="text" label="Searched term"/>
5863 </when>
5864 <when value="not">
5865 <param name="query_text" type="text" label="Searched term"/>
5866 <param name="not_query_text" type="text" label="Limiting term"/>
5867 </when>
5868 <when value="range">
5869 <param name="min" type="text" label="From"/>
5870 <param name="max" type="text" label="To"/>
5871 </when>
5872 </conditional>
5873 </repeat>
5874 </when>
5875
5876 <when value="hmmer_seq">
5877 <param name="fields" type="select" label="Fields to extract" multiple="true">
5878 <option value="ENSEMBL" selected="true">ENSEMBL</option>
5879 <option value="PDB" selected="true">PDB</option>
5880 <option value="UNIPROT" selected="true">UNIPROT</option>
5881 <option value="content" selected="true">content</option>
5882 <option value="domain_source" selected="true">domain_source</option>
5883 <option value="id" selected="true">id</option>
5884 <validator type="no_options" message="Please select at least one field" />
5885 </param>
5886 <repeat name="queries" title="Add a query">
5887 <param name="combination_operation" type="select" label="Combination operation" >
5888 <option value="AND">AND</option>
5889 <option value="OR">OR</option>
5890 <option value="NOT">NOT</option>
5891 </param>
5892 <param name="query_field" type="select" label="Fields" >
5893 <option value="ENSEMBL">ENSEMBL</option>
5894 <option value="PDB">PDB</option>
5895 <option value="UNIPROT">UNIPROT</option>
5896 <option value="domain_source">domain_source</option>
5897 <option value="id">id</option>
5898 </param>
5899 <conditional name="comp_operation">
5900 <param name="operation" type="select" label="Comparison operation" >
5901 <option value="equal">equal</option>
5902 <option value="not">not</option>
5903 <option value="range">range</option>
5904 </param>
5905 <when value="equal">
5906 <param name="query_text" type="text" label="Searched term"/>
5907 </when>
5908 <when value="not">
5909 <param name="query_text" type="text" label="Searched term"/>
5910 <param name="not_query_text" type="text" label="Limiting term"/>
5911 </when>
5912 <when value="range">
5913 <param name="min" type="text" label="From"/>
5914 <param name="max" type="text" label="To"/>
5915 </when>
5916 </conditional>
5917 </repeat>
5918 </when>
5919
5920 <when value="metagenomics_projects">
5921 <param name="fields" type="select" label="Fields to extract" multiple="true">
5922 <option value="METAGENOMICS_RUNS" selected="true">METAGENOMICS_RUNS</option>
5923 <option value="METAGENOMICS_SAMPLES" selected="true">METAGENOMICS_SAMPLES</option>
5924 <option value="biome_name" selected="true">biome_name</option>
5925 <option value="description" selected="true">description</option>
5926 <option value="domain_source" selected="true">domain_source</option>
5927 <option value="id" selected="true">id</option>
5928 <option value="name" selected="true">name</option>
5929 <validator type="no_options" message="Please select at least one field" />
5930 </param>
5931 <repeat name="queries" title="Add a query">
5932 <param name="combination_operation" type="select" label="Combination operation" >
5933 <option value="AND">AND</option>
5934 <option value="OR">OR</option>
5935 <option value="NOT">NOT</option>
5936 </param>
5937 <param name="query_field" type="select" label="Fields" >
5938 <option value="METAGENOMICS_RUNS">METAGENOMICS_RUNS</option>
5939 <option value="METAGENOMICS_SAMPLES">METAGENOMICS_SAMPLES</option>
5940 <option value="biome">biome</option>
5941 <option value="biome_name">biome_name</option>
5942 <option value="centre_name">centre_name</option>
5943 <option value="creation_date">creation_date</option>
5944 <option value="description">description</option>
5945 <option value="domain_source">domain_source</option>
5946 <option value="id">id</option>
5947 <option value="last_modification_date">last_modification_date</option>
5948 <option value="name">name</option>
5949 <option value="releaseDate_date">releaseDate_date</option>
5950 </param>
5951 <conditional name="comp_operation">
5952 <param name="operation" type="select" label="Comparison operation" >
5953 <option value="equal">equal</option>
5954 <option value="not">not</option>
5955 <option value="range">range</option>
5956 </param>
5957 <when value="equal">
5958 <param name="query_text" type="text" label="Searched term"/>
5959 </when>
5960 <when value="not">
5961 <param name="query_text" type="text" label="Searched term"/>
5962 <param name="not_query_text" type="text" label="Limiting term"/>
5963 </when>
5964 <when value="range">
5965 <param name="min" type="text" label="From"/>
5966 <param name="max" type="text" label="To"/>
5967 </when>
5968 </conditional>
5969 </repeat>
5970 </when>
5971
5972 <when value="metagenomics_runs">
5973 <param name="fields" type="select" label="Fields to extract" multiple="true">
5974 <option value="GO" selected="true">GO</option>
5975 <option value="INTERPRO" selected="true">INTERPRO</option>
5976 <option value="METAGENOMICS_PROJECTS" selected="true">METAGENOMICS_PROJECTS</option>
5977 <option value="METAGENOMICS_SAMPLES" selected="true">METAGENOMICS_SAMPLES</option>
5978 <option value="altitude" selected="true">altitude</option>
5979 <option value="depth" selected="true">depth</option>
5980 <option value="domain_source" selected="true">domain_source</option>
5981 <option value="experiment_type" selected="true">experiment_type</option>
5982 <option value="id" selected="true">id</option>
5983 <option value="name" selected="true">name</option>
5984 <option value="pH" selected="true">pH</option>
5985 <option value="pipeline_version" selected="true">pipeline_version</option>
5986 <option value="project_name" selected="true">project_name</option>
5987 <option value="sample_name" selected="true">sample_name</option>
5988 <option value="temperature" selected="true">temperature</option>
5989 <validator type="no_options" message="Please select at least one field" />
5990 </param>
5991 <repeat name="queries" title="Add a query">
5992 <param name="combination_operation" type="select" label="Combination operation" >
5993 <option value="AND">AND</option>
5994 <option value="OR">OR</option>
5995 <option value="NOT">NOT</option>
5996 </param>
5997 <param name="query_field" type="select" label="Fields" >
5998 <option value="GO">GO</option>
5999 <option value="INTERPRO">INTERPRO</option>
6000 <option value="METAGENOMICS_PROJECTS">METAGENOMICS_PROJECTS</option>
6001 <option value="METAGENOMICS_SAMPLES">METAGENOMICS_SAMPLES</option>
6002 <option value="altitude">altitude</option>
6003 <option value="biome">biome</option>
6004 <option value="completion_date">completion_date</option>
6005 <option value="creation_date">creation_date</option>
6006 <option value="depth">depth</option>
6007 <option value="domain_source">domain_source</option>
6008 <option value="experiment_type">experiment_type</option>
6009 <option value="go_term">go_term</option>
6010 <option value="id">id</option>
6011 <option value="interpro_entry">interpro_entry</option>
6012 <option value="name">name</option>
6013 <option value="organism">organism</option>
6014 <option value="pH">pH</option>
6015 <option value="pipeline_version">pipeline_version</option>
6016 <option value="project_name">project_name</option>
6017 <option value="sample_name">sample_name</option>
6018 <option value="temperature">temperature</option>
6019 </param>
6020 <conditional name="comp_operation">
6021 <param name="operation" type="select" label="Comparison operation" >
6022 <option value="equal">equal</option>
6023 <option value="not">not</option>
6024 <option value="range">range</option>
6025 </param>
6026 <when value="equal">
6027 <param name="query_text" type="text" label="Searched term"/>
6028 </when>
6029 <when value="not">
6030 <param name="query_text" type="text" label="Searched term"/>
6031 <param name="not_query_text" type="text" label="Limiting term"/>
6032 </when>
6033 <when value="range">
6034 <param name="min" type="text" label="From"/>
6035 <param name="max" type="text" label="To"/>
6036 </when>
6037 </conditional>
6038 </repeat>
6039 </when>
6040
6041 <when value="metagenomics_samples">
6042 <param name="fields" type="select" label="Fields to extract" multiple="true">
6043 <option value="ENVO" selected="true">ENVO</option>
6044 <option value="METAGENOMICS_PROJECTS" selected="true">METAGENOMICS_PROJECTS</option>
6045 <option value="METAGENOMICS_RUNS" selected="true">METAGENOMICS_RUNS</option>
6046 <option value="UBERON" selected="true">UBERON</option>
6047 <option value="biome_name" selected="true">biome_name</option>
6048 <option value="description" selected="true">description</option>
6049 <option value="domain_source" selected="true">domain_source</option>
6050 <option value="id" selected="true">id</option>
6051 <option value="name" selected="true">name</option>
6052 <option value="project_name" selected="true">project_name</option>
6053 <validator type="no_options" message="Please select at least one field" />
6054 </param>
6055 <repeat name="queries" title="Add a query">
6056 <param name="combination_operation" type="select" label="Combination operation" >
6057 <option value="AND">AND</option>
6058 <option value="OR">OR</option>
6059 <option value="NOT">NOT</option>
6060 </param>
6061 <param name="query_field" type="select" label="Fields" >
6062 <option value="ENVO">ENVO</option>
6063 <option value="METAGENOMICS_PROJECTS">METAGENOMICS_PROJECTS</option>
6064 <option value="METAGENOMICS_RUNS">METAGENOMICS_RUNS</option>
6065 <option value="UBERON">UBERON</option>
6066 <option value="alias">alias</option>
6067 <option value="altitude">altitude</option>
6068 <option value="biome">biome</option>
6069 <option value="biome_name">biome_name</option>
6070 <option value="body-mass_index">body-mass_index</option>
6071 <option value="body_product">body_product</option>
6072 <option value="collection_date">collection_date</option>
6073 <option value="creation_date">creation_date</option>
6074 <option value="depth">depth</option>
6075 <option value="description">description</option>
6076 <option value="disease_status">disease_status</option>
6077 <option value="domain_source">domain_source</option>
6078 <option value="elevation">elevation</option>
6079 <option value="experiment_type">experiment_type</option>
6080 <option value="feature">feature</option>
6081 <option value="id">id</option>
6082 <option value="last_modification_date">last_modification_date</option>
6083 <option value="latitude_end">latitude_end</option>
6084 <option value="latitude_start">latitude_start</option>
6085 <option value="location_name">location_name</option>
6086 <option value="longitude_end">longitude_end</option>
6087 <option value="longitude_start">longitude_start</option>
6088 <option value="marine_region">marine_region</option>
6089 <option value="material">material</option>
6090 <option value="name">name</option>
6091 <option value="ph">ph</option>
6092 <option value="phenotype">phenotype</option>
6093 <option value="project_name">project_name</option>
6094 <option value="salinity">salinity</option>
6095 <option value="sequencing_method">sequencing_method</option>
6096 <option value="species">species</option>
6097 <option value="temperature">temperature</option>
6098 </param>
6099 <conditional name="comp_operation">
6100 <param name="operation" type="select" label="Comparison operation" >
6101 <option value="equal">equal</option>
6102 <option value="not">not</option>
6103 <option value="range">range</option>
6104 </param>
6105 <when value="equal">
6106 <param name="query_text" type="text" label="Searched term"/>
6107 </when>
6108 <when value="not">
6109 <param name="query_text" type="text" label="Searched term"/>
6110 <param name="not_query_text" type="text" label="Limiting term"/>
6111 </when>
6112 <when value="range">
6113 <param name="min" type="text" label="From"/>
6114 <param name="max" type="text" label="To"/>
6115 </when>
6116 </conditional>
6117 </repeat>
6118 </when>
6119
6120 <when value="nrnl1">
6121 <param name="fields" type="select" label="Fields to extract" multiple="true">
6122 <option value="EM_PAT" selected="true">EM_PAT</option>
6123 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
6124 <option value="domain_source" selected="true">domain_source</option>
6125 <option value="id" selected="true">id</option>
6126 <validator type="no_options" message="Please select at least one field" />
6127 </param>
6128 <repeat name="queries" title="Add a query">
6129 <param name="combination_operation" type="select" label="Combination operation" >
6130 <option value="AND">AND</option>
6131 <option value="OR">OR</option>
6132 <option value="NOT">NOT</option>
6133 </param>
6134 <param name="query_field" type="select" label="Fields" >
6135 <option value="EM_PAT">EM_PAT</option>
6136 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
6137 <option value="domain_source">domain_source</option>
6138 <option value="earliest_publication_date">earliest_publication_date</option>
6139 <option value="id">id</option>
6140 <option value="master_patent_publication">master_patent_publication</option>
6141 <option value="md5">md5</option>
6142 </param>
6143 <conditional name="comp_operation">
6144 <param name="operation" type="select" label="Comparison operation" >
6145 <option value="equal">equal</option>
6146 <option value="not">not</option>
6147 <option value="range">range</option>
6148 </param>
6149 <when value="equal">
6150 <param name="query_text" type="text" label="Searched term"/>
6151 </when>
6152 <when value="not">
6153 <param name="query_text" type="text" label="Searched term"/>
6154 <param name="not_query_text" type="text" label="Limiting term"/>
6155 </when>
6156 <when value="range">
6157 <param name="min" type="text" label="From"/>
6158 <param name="max" type="text" label="To"/>
6159 </when>
6160 </conditional>
6161 </repeat>
6162 </when>
6163
6164 <when value="nrnl2">
6165 <param name="fields" type="select" label="Fields to extract" multiple="true">
6166 <option value="EM_PAT" selected="true">EM_PAT</option>
6167 <option value="PATENTFAMILIES" selected="true">PATENTFAMILIES</option>
6168 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
6169 <option value="domain_source" selected="true">domain_source</option>
6170 <option value="id" selected="true">id</option>
6171 <validator type="no_options" message="Please select at least one field" />
6172 </param>
6173 <repeat name="queries" title="Add a query">
6174 <param name="combination_operation" type="select" label="Combination operation" >
6175 <option value="AND">AND</option>
6176 <option value="OR">OR</option>
6177 <option value="NOT">NOT</option>
6178 </param>
6179 <param name="query_field" type="select" label="Fields" >
6180 <option value="EM_PAT">EM_PAT</option>
6181 <option value="PATENTFAMILIES">PATENTFAMILIES</option>
6182 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
6183 <option value="domain_source">domain_source</option>
6184 <option value="earliest_publication_date">earliest_publication_date</option>
6185 <option value="id">id</option>
6186 <option value="master_patent_publication">master_patent_publication</option>
6187 <option value="md5">md5</option>
6188 <option value="patent_priority">patent_priority</option>
6189 <option value="patent_priority_date">patent_priority_date</option>
6190 </param>
6191 <conditional name="comp_operation">
6192 <param name="operation" type="select" label="Comparison operation" >
6193 <option value="equal">equal</option>
6194 <option value="not">not</option>
6195 <option value="range">range</option>
6196 </param>
6197 <when value="equal">
6198 <param name="query_text" type="text" label="Searched term"/>
6199 </when>
6200 <when value="not">
6201 <param name="query_text" type="text" label="Searched term"/>
6202 <param name="not_query_text" type="text" label="Limiting term"/>
6203 </when>
6204 <when value="range">
6205 <param name="min" type="text" label="From"/>
6206 <param name="max" type="text" label="To"/>
6207 </when>
6208 </conditional>
6209 </repeat>
6210 </when>
6211
6212 <when value="nrpl1">
6213 <param name="fields" type="select" label="Fields to extract" multiple="true">
6214 <option value="EPOP" selected="true">EPOP</option>
6215 <option value="JPOP" selected="true">JPOP</option>
6216 <option value="KPOP" selected="true">KPOP</option>
6217 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
6218 <option value="USPOP" selected="true">USPOP</option>
6219 <option value="domain_source" selected="true">domain_source</option>
6220 <option value="id" selected="true">id</option>
6221 <validator type="no_options" message="Please select at least one field" />
6222 </param>
6223 <repeat name="queries" title="Add a query">
6224 <param name="combination_operation" type="select" label="Combination operation" >
6225 <option value="AND">AND</option>
6226 <option value="OR">OR</option>
6227 <option value="NOT">NOT</option>
6228 </param>
6229 <param name="query_field" type="select" label="Fields" >
6230 <option value="EPOP">EPOP</option>
6231 <option value="JPOP">JPOP</option>
6232 <option value="KPOP">KPOP</option>
6233 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
6234 <option value="USPOP">USPOP</option>
6235 <option value="domain_source">domain_source</option>
6236 <option value="earliest_publication_date">earliest_publication_date</option>
6237 <option value="id">id</option>
6238 <option value="master_patent_publication">master_patent_publication</option>
6239 <option value="md5">md5</option>
6240 </param>
6241 <conditional name="comp_operation">
6242 <param name="operation" type="select" label="Comparison operation" >
6243 <option value="equal">equal</option>
6244 <option value="not">not</option>
6245 <option value="range">range</option>
6246 </param>
6247 <when value="equal">
6248 <param name="query_text" type="text" label="Searched term"/>
6249 </when>
6250 <when value="not">
6251 <param name="query_text" type="text" label="Searched term"/>
6252 <param name="not_query_text" type="text" label="Limiting term"/>
6253 </when>
6254 <when value="range">
6255 <param name="min" type="text" label="From"/>
6256 <param name="max" type="text" label="To"/>
6257 </when>
6258 </conditional>
6259 </repeat>
6260 </when>
6261
6262 <when value="nrpl2">
6263 <param name="fields" type="select" label="Fields to extract" multiple="true">
6264 <option value="EPOP" selected="true">EPOP</option>
6265 <option value="JPOP" selected="true">JPOP</option>
6266 <option value="KPOP" selected="true">KPOP</option>
6267 <option value="PATENTFAMILIES" selected="true">PATENTFAMILIES</option>
6268 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
6269 <option value="USPOP" selected="true">USPOP</option>
6270 <option value="domain_source" selected="true">domain_source</option>
6271 <option value="id" selected="true">id</option>
6272 <validator type="no_options" message="Please select at least one field" />
6273 </param>
6274 <repeat name="queries" title="Add a query">
6275 <param name="combination_operation" type="select" label="Combination operation" >
6276 <option value="AND">AND</option>
6277 <option value="OR">OR</option>
6278 <option value="NOT">NOT</option>
6279 </param>
6280 <param name="query_field" type="select" label="Fields" >
6281 <option value="EPOP">EPOP</option>
6282 <option value="JPOP">JPOP</option>
6283 <option value="KPOP">KPOP</option>
6284 <option value="PATENTFAMILIES">PATENTFAMILIES</option>
6285 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
6286 <option value="USPOP">USPOP</option>
6287 <option value="domain_source">domain_source</option>
6288 <option value="earliest_publication_date">earliest_publication_date</option>
6289 <option value="id">id</option>
6290 <option value="master_patent_publication">master_patent_publication</option>
6291 <option value="md5">md5</option>
6292 <option value="patent_priority">patent_priority</option>
6293 <option value="patent_priority_date">patent_priority_date</option>
6294 </param>
6295 <conditional name="comp_operation">
6296 <param name="operation" type="select" label="Comparison operation" >
6297 <option value="equal">equal</option>
6298 <option value="not">not</option>
6299 <option value="range">range</option>
6300 </param>
6301 <when value="equal">
6302 <param name="query_text" type="text" label="Searched term"/>
6303 </when>
6304 <when value="not">
6305 <param name="query_text" type="text" label="Searched term"/>
6306 <param name="not_query_text" type="text" label="Limiting term"/>
6307 </when>
6308 <when value="range">
6309 <param name="min" type="text" label="From"/>
6310 <param name="max" type="text" label="To"/>
6311 </when>
6312 </conditional>
6313 </repeat>
6314 </when>
6315
6316 <when value="non-coding_release">
6317 <param name="fields" type="select" label="Fields to extract" multiple="true">
6318 <option value="AGRICOLA" selected="true">AGRICOLA</option>
6319 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
6320 <option value="DOI" selected="true">DOI</option>
6321 <option value="EMBL" selected="true">EMBL</option>
6322 <option value="GTRNADB" selected="true">GTRNADB</option>
6323 <option value="LNCRNADB" selected="true">LNCRNADB</option>
6324 <option value="MIRBASE" selected="true">MIRBASE</option>
6325 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
6326 <option value="POMBASE" selected="true">POMBASE</option>
6327 <option value="PUBMED" selected="true">PUBMED</option>
6328 <option value="SILVA-LSU" selected="true">SILVA-LSU</option>
6329 <option value="SILVA-SSU" selected="true">SILVA-SSU</option>
6330 <option value="SRPDB" selected="true">SRPDB</option>
6331 <option value="TAXON" selected="true">TAXON</option>
6332 <option value="TMRNA-WEBSITE" selected="true">TMRNA-WEBSITE</option>
6333 <option value="UNILIB" selected="true">UNILIB</option>
6334 <option value="VEGA-GN" selected="true">VEGA-GN</option>
6335 <option value="VEGA-TR" selected="true">VEGA-TR</option>
6336 <option value="WORMBASE" selected="true">WORMBASE</option>
6337 <option value="description" selected="true">description</option>
6338 <option value="domain_source" selected="true">domain_source</option>
6339 <option value="id" selected="true">id</option>
6340 <validator type="no_options" message="Please select at least one field" />
6341 </param>
6342 <repeat name="queries" title="Add a query">
6343 <param name="combination_operation" type="select" label="Combination operation" >
6344 <option value="AND">AND</option>
6345 <option value="OR">OR</option>
6346 <option value="NOT">NOT</option>
6347 </param>
6348 <param name="query_field" type="select" label="Fields" >
6349 <option value="AGRICOLA">AGRICOLA</option>
6350 <option value="BIOSAMPLE">BIOSAMPLE</option>
6351 <option value="DOI">DOI</option>
6352 <option value="EMBL">EMBL</option>
6353 <option value="GTRNADB">GTRNADB</option>
6354 <option value="LNCRNADB">LNCRNADB</option>
6355 <option value="MD5">MD5</option>
6356 <option value="MIRBASE">MIRBASE</option>
6357 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
6358 <option value="POMBASE">POMBASE</option>
6359 <option value="PROJECT">PROJECT</option>
6360 <option value="PUBMED">PUBMED</option>
6361 <option value="SILVA-LSU">SILVA-LSU</option>
6362 <option value="SILVA-SSU">SILVA-SSU</option>
6363 <option value="SRPDB">SRPDB</option>
6364 <option value="TAXON">TAXON</option>
6365 <option value="TMRNA-WEBSITE">TMRNA-WEBSITE</option>
6366 <option value="UNILIB">UNILIB</option>
6367 <option value="VEGA-GN">VEGA-GN</option>
6368 <option value="VEGA-TR">VEGA-TR</option>
6369 <option value="WORMBASE">WORMBASE</option>
6370 <option value="bio_material">bio_material</option>
6371 <option value="creation_date">creation_date</option>
6372 <option value="culture_collection">culture_collection</option>
6373 <option value="data_class">data_class</option>
6374 <option value="description">description</option>
6375 <option value="division">division</option>
6376 <option value="domain_source">domain_source</option>
6377 <option value="gene">gene</option>
6378 <option value="gene_synonym">gene_synonym</option>
6379 <option value="id">id</option>
6380 <option value="keywords">keywords</option>
6381 <option value="last_modification_date">last_modification_date</option>
6382 <option value="length">length</option>
6383 <option value="locus_tag">locus_tag</option>
6384 <option value="molecule_type">molecule_type</option>
6385 <option value="old_locus_tag">old_locus_tag</option>
6386 <option value="organelle">organelle</option>
6387 <option value="organism">organism</option>
6388 <option value="organism_classification">organism_classification</option>
6389 <option value="organism_species">organism_species</option>
6390 <option value="product">product</option>
6391 <option value="references">references</option>
6392 <option value="sequence_version">sequence_version</option>
6393 <option value="specimen_voucher">specimen_voucher</option>
6394 <option value="topology">topology</option>
6395 </param>
6396 <conditional name="comp_operation">
6397 <param name="operation" type="select" label="Comparison operation" >
6398 <option value="equal">equal</option>
6399 <option value="not">not</option>
6400 <option value="range">range</option>
6401 </param>
6402 <when value="equal">
6403 <param name="query_text" type="text" label="Searched term"/>
6404 </when>
6405 <when value="not">
6406 <param name="query_text" type="text" label="Searched term"/>
6407 <param name="not_query_text" type="text" label="Limiting term"/>
6408 </when>
6409 <when value="range">
6410 <param name="min" type="text" label="From"/>
6411 <param name="max" type="text" label="To"/>
6412 </when>
6413 </conditional>
6414 </repeat>
6415 </when>
6416
6417 <when value="non-coding_update">
6418 <param name="fields" type="select" label="Fields to extract" multiple="true">
6419 <option value="AGRICOLA" selected="true">AGRICOLA</option>
6420 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
6421 <option value="DOI" selected="true">DOI</option>
6422 <option value="EMBL" selected="true">EMBL</option>
6423 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
6424 <option value="PUBMED" selected="true">PUBMED</option>
6425 <option value="SILVA-LSU" selected="true">SILVA-LSU</option>
6426 <option value="SILVA-SSU" selected="true">SILVA-SSU</option>
6427 <option value="TAXON" selected="true">TAXON</option>
6428 <option value="WORMBASE" selected="true">WORMBASE</option>
6429 <option value="description" selected="true">description</option>
6430 <option value="domain_source" selected="true">domain_source</option>
6431 <option value="id" selected="true">id</option>
6432 <validator type="no_options" message="Please select at least one field" />
6433 </param>
6434 <repeat name="queries" title="Add a query">
6435 <param name="combination_operation" type="select" label="Combination operation" >
6436 <option value="AND">AND</option>
6437 <option value="OR">OR</option>
6438 <option value="NOT">NOT</option>
6439 </param>
6440 <param name="query_field" type="select" label="Fields" >
6441 <option value="AGRICOLA">AGRICOLA</option>
6442 <option value="BIOSAMPLE">BIOSAMPLE</option>
6443 <option value="DOI">DOI</option>
6444 <option value="EMBL">EMBL</option>
6445 <option value="MD5">MD5</option>
6446 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
6447 <option value="PROJECT">PROJECT</option>
6448 <option value="PUBMED">PUBMED</option>
6449 <option value="SILVA-LSU">SILVA-LSU</option>
6450 <option value="SILVA-SSU">SILVA-SSU</option>
6451 <option value="TAXON">TAXON</option>
6452 <option value="WORMBASE">WORMBASE</option>
6453 <option value="bio_material">bio_material</option>
6454 <option value="creation_date">creation_date</option>
6455 <option value="culture_collection">culture_collection</option>
6456 <option value="data_class">data_class</option>
6457 <option value="description">description</option>
6458 <option value="division">division</option>
6459 <option value="domain_source">domain_source</option>
6460 <option value="gene">gene</option>
6461 <option value="gene_synonym">gene_synonym</option>
6462 <option value="id">id</option>
6463 <option value="keywords">keywords</option>
6464 <option value="last_modification_date">last_modification_date</option>
6465 <option value="length">length</option>
6466 <option value="locus_tag">locus_tag</option>
6467 <option value="molecule_type">molecule_type</option>
6468 <option value="old_locus_tag">old_locus_tag</option>
6469 <option value="organelle">organelle</option>
6470 <option value="organism">organism</option>
6471 <option value="organism_classification">organism_classification</option>
6472 <option value="organism_species">organism_species</option>
6473 <option value="product">product</option>
6474 <option value="references">references</option>
6475 <option value="sequence_version">sequence_version</option>
6476 <option value="specimen_voucher">specimen_voucher</option>
6477 <option value="topology">topology</option>
6478 </param>
6479 <conditional name="comp_operation">
6480 <param name="operation" type="select" label="Comparison operation" >
6481 <option value="equal">equal</option>
6482 <option value="not">not</option>
6483 <option value="range">range</option>
6484 </param>
6485 <when value="equal">
6486 <param name="query_text" type="text" label="Searched term"/>
6487 </when>
6488 <when value="not">
6489 <param name="query_text" type="text" label="Searched term"/>
6490 <param name="not_query_text" type="text" label="Limiting term"/>
6491 </when>
6492 <when value="range">
6493 <param name="min" type="text" label="From"/>
6494 <param name="max" type="text" label="To"/>
6495 </when>
6496 </conditional>
6497 </repeat>
6498 </when>
6499
6500 <when value="omim">
6501 <param name="fields" type="select" label="Fields to extract" multiple="true">
6502 <option value="OMIM" selected="true">OMIM</option>
6503 <option value="description" selected="true">description</option>
6504 <option value="domain_source" selected="true">domain_source</option>
6505 <option value="id" selected="true">id</option>
6506 <option value="title" selected="true">title</option>
6507 <validator type="no_options" message="Please select at least one field" />
6508 </param>
6509 <repeat name="queries" title="Add a query">
6510 <param name="combination_operation" type="select" label="Combination operation" >
6511 <option value="AND">AND</option>
6512 <option value="OR">OR</option>
6513 <option value="NOT">NOT</option>
6514 </param>
6515 <param name="query_field" type="select" label="Fields" >
6516 <option value="OMIM">OMIM</option>
6517 <option value="allelic_variations">allelic_variations</option>
6518 <option value="alternative_title">alternative_title</option>
6519 <option value="clinical_synopsis">clinical_synopsis</option>
6520 <option value="creation_date">creation_date</option>
6521 <option value="description">description</option>
6522 <option value="domain_source">domain_source</option>
6523 <option value="id">id</option>
6524 <option value="references">references</option>
6525 <option value="see_also">see_also</option>
6526 <option value="title">title</option>
6527 </param>
6528 <conditional name="comp_operation">
6529 <param name="operation" type="select" label="Comparison operation" >
6530 <option value="equal">equal</option>
6531 <option value="not">not</option>
6532 <option value="range">range</option>
6533 </param>
6534 <when value="equal">
6535 <param name="query_text" type="text" label="Searched term"/>
6536 </when>
6537 <when value="not">
6538 <param name="query_text" type="text" label="Searched term"/>
6539 <param name="not_query_text" type="text" label="Limiting term"/>
6540 </when>
6541 <when value="range">
6542 <param name="min" type="text" label="From"/>
6543 <param name="max" type="text" label="To"/>
6544 </when>
6545 </conditional>
6546 </repeat>
6547 </when>
6548
6549 <when value="pdbe">
6550 <param name="fields" type="select" label="Fields to extract" multiple="true">
6551 <option value="CATH" selected="true">CATH</option>
6552 <option value="EC" selected="true">EC</option>
6553 <option value="GO" selected="true">GO</option>
6554 <option value="INTERPRO" selected="true">INTERPRO</option>
6555 <option value="MSDSD" selected="true">MSDSD</option>
6556 <option value="PFAM" selected="true">PFAM</option>
6557 <option value="PUBMED" selected="true">PUBMED</option>
6558 <option value="SCOP" selected="true">SCOP</option>
6559 <option value="TAXONOMY" selected="true">TAXONOMY</option>
6560 <option value="UNIPROT" selected="true">UNIPROT</option>
6561 <option value="acc" selected="true">acc</option>
6562 <option value="description" selected="true">description</option>
6563 <option value="domain_source" selected="true">domain_source</option>
6564 <option value="id" selected="true">id</option>
6565 <option value="name" selected="true">name</option>
6566 <validator type="no_options" message="Please select at least one field" />
6567 </param>
6568 <repeat name="queries" title="Add a query">
6569 <param name="combination_operation" type="select" label="Combination operation" >
6570 <option value="AND">AND</option>
6571 <option value="OR">OR</option>
6572 <option value="NOT">NOT</option>
6573 </param>
6574 <param name="query_field" type="select" label="Fields" >
6575 <option value="CATH">CATH</option>
6576 <option value="EC">EC</option>
6577 <option value="GO">GO</option>
6578 <option value="INTERPRO">INTERPRO</option>
6579 <option value="MSDSD">MSDSD</option>
6580 <option value="PFAM">PFAM</option>
6581 <option value="PUBMED">PUBMED</option>
6582 <option value="SCOP">SCOP</option>
6583 <option value="TAXONOMY">TAXONOMY</option>
6584 <option value="UNIPROT">UNIPROT</option>
6585 <option value="acc">acc</option>
6586 <option value="assembly">assembly</option>
6587 <option value="author">author</option>
6588 <option value="chain">chain</option>
6589 <option value="citation">citation</option>
6590 <option value="creation_date">creation_date</option>
6591 <option value="description">description</option>
6592 <option value="domain_source">domain_source</option>
6593 <option value="experiment_type">experiment_type</option>
6594 <option value="id">id</option>
6595 <option value="keywords">keywords</option>
6596 <option value="last_modification_date">last_modification_date</option>
6597 <option value="ligand">ligand</option>
6598 <option value="name">name</option>
6599 <option value="resolution">resolution</option>
6600 <option value="source_organism">source_organism</option>
6601 </param>
6602 <conditional name="comp_operation">
6603 <param name="operation" type="select" label="Comparison operation" >
6604 <option value="equal">equal</option>
6605 <option value="not">not</option>
6606 <option value="range">range</option>
6607 </param>
6608 <when value="equal">
6609 <param name="query_text" type="text" label="Searched term"/>
6610 </when>
6611 <when value="not">
6612 <param name="query_text" type="text" label="Searched term"/>
6613 <param name="not_query_text" type="text" label="Limiting term"/>
6614 </when>
6615 <when value="range">
6616 <param name="min" type="text" label="From"/>
6617 <param name="max" type="text" label="To"/>
6618 </when>
6619 </conditional>
6620 </repeat>
6621 </when>
6622
6623 <when value="pride">
6624 <param name="fields" type="select" label="Fields to extract" multiple="true">
6625 <option value="ENSEMBL" selected="true">ENSEMBL</option>
6626 <option value="PUBMED" selected="true">PUBMED</option>
6627 <option value="TAXONOMY" selected="true">TAXONOMY</option>
6628 <option value="UNIPROT" selected="true">UNIPROT</option>
6629 <option value="data_protocol" selected="true">data_protocol</option>
6630 <option value="dataset_file" selected="true">dataset_file</option>
6631 <option value="description" selected="true">description</option>
6632 <option value="disease" selected="true">disease</option>
6633 <option value="domain_source" selected="true">domain_source</option>
6634 <option value="full_dataset_link" selected="true">full_dataset_link</option>
6635 <option value="id" selected="true">id</option>
6636 <option value="instrument_platform" selected="true">instrument_platform</option>
6637 <option value="labhead" selected="true">labhead</option>
6638 <option value="labhead_affiliation" selected="true">labhead_affiliation</option>
6639 <option value="labhead_mail" selected="true">labhead_mail</option>
6640 <option value="modification" selected="true">modification</option>
6641 <option value="name" selected="true">name</option>
6642 <option value="omics_type" selected="true">omics_type</option>
6643 <option value="publication" selected="true">publication</option>
6644 <option value="publication_date" selected="true">publication_date</option>
6645 <option value="sample_protocol" selected="true">sample_protocol</option>
6646 <option value="species" selected="true">species</option>
6647 <option value="submission_date" selected="true">submission_date</option>
6648 <option value="submitter_keywords" selected="true">submitter_keywords</option>
6649 <option value="technology_type" selected="true">technology_type</option>
6650 <option value="tissue" selected="true">tissue</option>
6651 <validator type="no_options" message="Please select at least one field" />
6652 </param>
6653 <repeat name="queries" title="Add a query">
6654 <param name="combination_operation" type="select" label="Combination operation" >
6655 <option value="AND">AND</option>
6656 <option value="OR">OR</option>
6657 <option value="NOT">NOT</option>
6658 </param>
6659 <param name="query_field" type="select" label="Fields" >
6660 <option value="ENSEMBL">ENSEMBL</option>
6661 <option value="PUBMED">PUBMED</option>
6662 <option value="TAXONOMY">TAXONOMY</option>
6663 <option value="UNIPROT">UNIPROT</option>
6664 <option value="acc">acc</option>
6665 <option value="cell_type">cell_type</option>
6666 <option value="curator_keywords">curator_keywords</option>
6667 <option value="data_protocol">data_protocol</option>
6668 <option value="data_synonyms">data_synonyms</option>
6669 <option value="description">description</option>
6670 <option value="description_synonyms">description_synonyms</option>
6671 <option value="disease">disease</option>
6672 <option value="doi">doi</option>
6673 <option value="domain_source">domain_source</option>
6674 <option value="full_dataset_link">full_dataset_link</option>
6675 <option value="id">id</option>
6676 <option value="instrument_platform">instrument_platform</option>
6677 <option value="labhead">labhead</option>
6678 <option value="labhead_affiliation">labhead_affiliation</option>
6679 <option value="labhead_mail">labhead_mail</option>
6680 <option value="modification">modification</option>
6681 <option value="name">name</option>
6682 <option value="name_synonyms">name_synonyms</option>
6683 <option value="omics_type">omics_type</option>
6684 <option value="publication">publication</option>
6685 <option value="publication_date">publication_date</option>
6686 <option value="pubmed_abstract">pubmed_abstract</option>
6687 <option value="pubmed_abstract_synonyms">pubmed_abstract_synonyms</option>
6688 <option value="pubmed_authors">pubmed_authors</option>
6689 <option value="pubmed_title">pubmed_title</option>
6690 <option value="pubmed_title_synonyms">pubmed_title_synonyms</option>
6691 <option value="quantification_method">quantification_method</option>
6692 <option value="repository">repository</option>
6693 <option value="sample_protocol">sample_protocol</option>
6694 <option value="sample_synonyms">sample_synonyms</option>
6695 <option value="software">software</option>
6696 <option value="species">species</option>
6697 <option value="submission_date">submission_date</option>
6698 <option value="submission_type">submission_type</option>
6699 <option value="submitter">submitter</option>
6700 <option value="submitter_affiliation">submitter_affiliation</option>
6701 <option value="submitter_keywords">submitter_keywords</option>
6702 <option value="submitter_mail">submitter_mail</option>
6703 <option value="technology_type">technology_type</option>
6704 <option value="tissue">tissue</option>
6705 </param>
6706 <conditional name="comp_operation">
6707 <param name="operation" type="select" label="Comparison operation" >
6708 <option value="equal">equal</option>
6709 <option value="not">not</option>
6710 <option value="range">range</option>
6711 </param>
6712 <when value="equal">
6713 <param name="query_text" type="text" label="Searched term"/>
6714 </when>
6715 <when value="not">
6716 <param name="query_text" type="text" label="Searched term"/>
6717 <param name="not_query_text" type="text" label="Limiting term"/>
6718 </when>
6719 <when value="range">
6720 <param name="min" type="text" label="From"/>
6721 <param name="max" type="text" label="To"/>
6722 </when>
6723 </conditional>
6724 </repeat>
6725 </when>
6726
6727 <when value="patentFamilies">
6728 <param name="fields" type="select" label="Fields to extract" multiple="true">
6729 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
6730 <option value="domain_source" selected="true">domain_source</option>
6731 <option value="id" selected="true">id</option>
6732 <validator type="no_options" message="Please select at least one field" />
6733 </param>
6734 <repeat name="queries" title="Add a query">
6735 <param name="combination_operation" type="select" label="Combination operation" >
6736 <option value="AND">AND</option>
6737 <option value="OR">OR</option>
6738 <option value="NOT">NOT</option>
6739 </param>
6740 <param name="query_field" type="select" label="Fields" >
6741 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
6742 <option value="domain_source">domain_source</option>
6743 <option value="id">id</option>
6744 <option value="master_patent_publication">master_patent_publication</option>
6745 <option value="patent_priority">patent_priority</option>
6746 </param>
6747 <conditional name="comp_operation">
6748 <param name="operation" type="select" label="Comparison operation" >
6749 <option value="equal">equal</option>
6750 <option value="not">not</option>
6751 <option value="range">range</option>
6752 </param>
6753 <when value="equal">
6754 <param name="query_text" type="text" label="Searched term"/>
6755 </when>
6756 <when value="not">
6757 <param name="query_text" type="text" label="Searched term"/>
6758 <param name="not_query_text" type="text" label="Limiting term"/>
6759 </when>
6760 <when value="range">
6761 <param name="min" type="text" label="From"/>
6762 <param name="max" type="text" label="To"/>
6763 </when>
6764 </conditional>
6765 </repeat>
6766 </when>
6767
6768 <when value="patentdb">
6769 <param name="fields" type="select" label="Fields to extract" multiple="true">
6770 <option value="EPO" selected="true">EPO</option>
6771 <option value="IPC" selected="true">IPC</option>
6772 <option value="description" selected="true">description</option>
6773 <option value="domain_source" selected="true">domain_source</option>
6774 <option value="id" selected="true">id</option>
6775 <option value="name" selected="true">name</option>
6776 <option value="patent_number" selected="true">patent_number</option>
6777 <option value="publication_date" selected="true">publication_date</option>
6778 <validator type="no_options" message="Please select at least one field" />
6779 </param>
6780 <repeat name="queries" title="Add a query">
6781 <param name="combination_operation" type="select" label="Combination operation" >
6782 <option value="AND">AND</option>
6783 <option value="OR">OR</option>
6784 <option value="NOT">NOT</option>
6785 </param>
6786 <param name="query_field" type="select" label="Fields" >
6787 <option value="EPO">EPO</option>
6788 <option value="IPC">IPC</option>
6789 <option value="MC">MC</option>
6790 <option value="application_date">application_date</option>
6791 <option value="author">author</option>
6792 <option value="datasource">datasource</option>
6793 <option value="description">description</option>
6794 <option value="designated_states">designated_states</option>
6795 <option value="domain_source">domain_source</option>
6796 <option value="id">id</option>
6797 <option value="name">name</option>
6798 <option value="patent_number">patent_number</option>
6799 <option value="publication_date">publication_date</option>
6800 <option value="type">type</option>
6801 </param>
6802 <conditional name="comp_operation">
6803 <param name="operation" type="select" label="Comparison operation" >
6804 <option value="equal">equal</option>
6805 <option value="not">not</option>
6806 <option value="range">range</option>
6807 </param>
6808 <when value="equal">
6809 <param name="query_text" type="text" label="Searched term"/>
6810 </when>
6811 <when value="not">
6812 <param name="query_text" type="text" label="Searched term"/>
6813 <param name="not_query_text" type="text" label="Limiting term"/>
6814 </when>
6815 <when value="range">
6816 <param name="min" type="text" label="From"/>
6817 <param name="max" type="text" label="To"/>
6818 </when>
6819 </conditional>
6820 </repeat>
6821 </when>
6822
6823 <when value="ebiweb_people">
6824 <param name="fields" type="select" label="Fields to extract" multiple="true">
6825 <option value="domain_source" selected="true">domain_source</option>
6826 <option value="email" selected="true">email</option>
6827 <option value="fax" selected="true">fax</option>
6828 <option value="forename" selected="true">forename</option>
6829 <option value="group" selected="true">group</option>
6830 <option value="id" selected="true">id</option>
6831 <option value="image" selected="true">image</option>
6832 <option value="keyname" selected="true">keyname</option>
6833 <option value="position" selected="true">position</option>
6834 <option value="room" selected="true">room</option>
6835 <option value="surname" selected="true">surname</option>
6836 <option value="tel" selected="true">tel</option>
6837 <validator type="no_options" message="Please select at least one field" />
6838 </param>
6839 <repeat name="queries" title="Add a query">
6840 <param name="combination_operation" type="select" label="Combination operation" >
6841 <option value="AND">AND</option>
6842 <option value="OR">OR</option>
6843 <option value="NOT">NOT</option>
6844 </param>
6845 <param name="query_field" type="select" label="Fields" >
6846 <option value="bio">bio</option>
6847 <option value="domain_source">domain_source</option>
6848 <option value="email">email</option>
6849 <option value="fax">fax</option>
6850 <option value="forename">forename</option>
6851 <option value="group">group</option>
6852 <option value="id">id</option>
6853 <option value="resource">resource</option>
6854 <option value="role">role</option>
6855 <option value="room">room</option>
6856 <option value="surname">surname</option>
6857 <option value="tel">tel</option>
6858 </param>
6859 <conditional name="comp_operation">
6860 <param name="operation" type="select" label="Comparison operation" >
6861 <option value="equal">equal</option>
6862 <option value="not">not</option>
6863 <option value="range">range</option>
6864 </param>
6865 <when value="equal">
6866 <param name="query_text" type="text" label="Searched term"/>
6867 </when>
6868 <when value="not">
6869 <param name="query_text" type="text" label="Searched term"/>
6870 <param name="not_query_text" type="text" label="Limiting term"/>
6871 </when>
6872 <when value="range">
6873 <param name="min" type="text" label="From"/>
6874 <param name="max" type="text" label="To"/>
6875 </when>
6876 </conditional>
6877 </repeat>
6878 </when>
6879
6880 <when value="peptide_atlas">
6881 <param name="fields" type="select" label="Fields to extract" multiple="true">
6882 <option value="ENSEMBL" selected="true">ENSEMBL</option>
6883 <option value="FLYBASE" selected="true">FLYBASE</option>
6884 <option value="INSECTBASE" selected="true">INSECTBASE</option>
6885 <option value="IPI" selected="true">IPI</option>
6886 <option value="NCBI" selected="true">NCBI</option>
6887 <option value="PASS" selected="true">PASS</option>
6888 <option value="PRIDE" selected="true">PRIDE</option>
6889 <option value="PUBMED" selected="true">PUBMED</option>
6890 <option value="SGD" selected="true">SGD</option>
6891 <option value="TAXONOMY" selected="true">TAXONOMY</option>
6892 <option value="UNIPROT" selected="true">UNIPROT</option>
6893 <option value="UNKNOWN" selected="true">UNKNOWN</option>
6894 <option value="WORMGENE" selected="true">WORMGENE</option>
6895 <option value="description" selected="true">description</option>
6896 <option value="disease" selected="true">disease</option>
6897 <option value="domain_source" selected="true">domain_source</option>
6898 <option value="full_dataset_link" selected="true">full_dataset_link</option>
6899 <option value="id" selected="true">id</option>
6900 <option value="instrument_platform" selected="true">instrument_platform</option>
6901 <option value="labhead" selected="true">labhead</option>
6902 <option value="labhead_affiliation" selected="true">labhead_affiliation</option>
6903 <option value="labhead_mail" selected="true">labhead_mail</option>
6904 <option value="modification" selected="true">modification</option>
6905 <option value="name" selected="true">name</option>
6906 <option value="omics_type" selected="true">omics_type</option>
6907 <option value="publication" selected="true">publication</option>
6908 <option value="publication_date" selected="true">publication_date</option>
6909 <option value="species" selected="true">species</option>
6910 <option value="technology_type" selected="true">technology_type</option>
6911 <option value="tissue" selected="true">tissue</option>
6912 <validator type="no_options" message="Please select at least one field" />
6913 </param>
6914 <repeat name="queries" title="Add a query">
6915 <param name="combination_operation" type="select" label="Combination operation" >
6916 <option value="AND">AND</option>
6917 <option value="OR">OR</option>
6918 <option value="NOT">NOT</option>
6919 </param>
6920 <param name="query_field" type="select" label="Fields" >
6921 <option value="ENSEMBL">ENSEMBL</option>
6922 <option value="FLYBASE">FLYBASE</option>
6923 <option value="INSECTBASE">INSECTBASE</option>
6924 <option value="IPI">IPI</option>
6925 <option value="NCBI">NCBI</option>
6926 <option value="PASS">PASS</option>
6927 <option value="PRIDE">PRIDE</option>
6928 <option value="PUBMED">PUBMED</option>
6929 <option value="SGD">SGD</option>
6930 <option value="TAXONOMY">TAXONOMY</option>
6931 <option value="UNIPROT">UNIPROT</option>
6932 <option value="UNKNOWN">UNKNOWN</option>
6933 <option value="WORMGENE">WORMGENE</option>
6934 <option value="acc">acc</option>
6935 <option value="cell_type">cell_type</option>
6936 <option value="curator_keywords">curator_keywords</option>
6937 <option value="description">description</option>
6938 <option value="description_synonyms">description_synonyms</option>
6939 <option value="disease">disease</option>
6940 <option value="domain_source">domain_source</option>
6941 <option value="export_date">export_date</option>
6942 <option value="full_dataset_link">full_dataset_link</option>
6943 <option value="id">id</option>
6944 <option value="instrument_platform">instrument_platform</option>
6945 <option value="labhead">labhead</option>
6946 <option value="labhead_affiliation">labhead_affiliation</option>
6947 <option value="labhead_mail">labhead_mail</option>
6948 <option value="modification">modification</option>
6949 <option value="name">name</option>
6950 <option value="name_synonyms">name_synonyms</option>
6951 <option value="omics_type">omics_type</option>
6952 <option value="publication">publication</option>
6953 <option value="publication_date">publication_date</option>
6954 <option value="pubmed_abstract">pubmed_abstract</option>
6955 <option value="pubmed_abstract_synonyms">pubmed_abstract_synonyms</option>
6956 <option value="pubmed_authors">pubmed_authors</option>
6957 <option value="pubmed_title">pubmed_title</option>
6958 <option value="pubmed_title_synonyms">pubmed_title_synonyms</option>
6959 <option value="quantification_method">quantification_method</option>
6960 <option value="repository">repository</option>
6961 <option value="software">software</option>
6962 <option value="species">species</option>
6963 <option value="submitter">submitter</option>
6964 <option value="submitter_affiliation">submitter_affiliation</option>
6965 <option value="submitter_email">submitter_email</option>
6966 <option value="submitter_mail">submitter_mail</option>
6967 <option value="technology_type">technology_type</option>
6968 <option value="tissue">tissue</option>
6969 </param>
6970 <conditional name="comp_operation">
6971 <param name="operation" type="select" label="Comparison operation" >
6972 <option value="equal">equal</option>
6973 <option value="not">not</option>
6974 <option value="range">range</option>
6975 </param>
6976 <when value="equal">
6977 <param name="query_text" type="text" label="Searched term"/>
6978 </when>
6979 <when value="not">
6980 <param name="query_text" type="text" label="Searched term"/>
6981 <param name="not_query_text" type="text" label="Limiting term"/>
6982 </when>
6983 <when value="range">
6984 <param name="min" type="text" label="From"/>
6985 <param name="max" type="text" label="To"/>
6986 </when>
6987 </conditional>
6988 </repeat>
6989 </when>
6990
6991 <when value="pfam">
6992 <param name="fields" type="select" label="Fields to extract" multiple="true">
6993 <option value="GO" selected="true">GO</option>
6994 <option value="INTERPRO" selected="true">INTERPRO</option>
6995 <option value="acc" selected="true">acc</option>
6996 <option value="description" selected="true">description</option>
6997 <option value="domain_source" selected="true">domain_source</option>
6998 <option value="id" selected="true">id</option>
6999 <option value="name" selected="true">name</option>
7000 <option value="type" selected="true">type</option>
7001 <validator type="no_options" message="Please select at least one field" />
7002 </param>
7003 <repeat name="queries" title="Add a query">
7004 <param name="combination_operation" type="select" label="Combination operation" >
7005 <option value="AND">AND</option>
7006 <option value="OR">OR</option>
7007 <option value="NOT">NOT</option>
7008 </param>
7009 <param name="query_field" type="select" label="Fields" >
7010 <option value="GO">GO</option>
7011 <option value="INTERPRO">INTERPRO</option>
7012 <option value="acc">acc</option>
7013 <option value="author">author</option>
7014 <option value="comment">comment</option>
7015 <option value="component">component</option>
7016 <option value="creation_date">creation_date</option>
7017 <option value="description">description</option>
7018 <option value="domain_source">domain_source</option>
7019 <option value="function">function</option>
7020 <option value="id">id</option>
7021 <option value="interproabstract">interproabstract</option>
7022 <option value="last_modified_date">last_modified_date</option>
7023 <option value="name">name</option>
7024 <option value="process">process</option>
7025 <option value="type">type</option>
7026 </param>
7027 <conditional name="comp_operation">
7028 <param name="operation" type="select" label="Comparison operation" >
7029 <option value="equal">equal</option>
7030 <option value="not">not</option>
7031 <option value="range">range</option>
7032 </param>
7033 <when value="equal">
7034 <param name="query_text" type="text" label="Searched term"/>
7035 </when>
7036 <when value="not">
7037 <param name="query_text" type="text" label="Searched term"/>
7038 <param name="not_query_text" type="text" label="Limiting term"/>
7039 </when>
7040 <when value="range">
7041 <param name="min" type="text" label="From"/>
7042 <param name="max" type="text" label="To"/>
7043 </when>
7044 </conditional>
7045 </repeat>
7046 </when>
7047
7048 <when value="pombase">
7049 <param name="fields" type="select" label="Fields to extract" multiple="true">
7050 <option value="EC_NUMBER" selected="true">EC_NUMBER</option>
7051 <option value="EMBL" selected="true">EMBL</option>
7052 <option value="ENTREZGENE" selected="true">ENTREZGENE</option>
7053 <option value="GO" selected="true">GO</option>
7054 <option value="INTERPRO" selected="true">INTERPRO</option>
7055 <option value="KEGG" selected="true">KEGG</option>
7056 <option value="KEGG_ENZYME" selected="true">KEGG_ENZYME</option>
7057 <option value="METACYC" selected="true">METACYC</option>
7058 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
7059 <option value="PDB" selected="true">PDB</option>
7060 <option value="PROTEIN_ID" selected="true">PROTEIN_ID</option>
7061 <option value="PUBMED" selected="true">PUBMED</option>
7062 <option value="REFSEQ_MRNA" selected="true">REFSEQ_MRNA</option>
7063 <option value="REFSEQ_MRNA_PREDICTED" selected="true">REFSEQ_MRNA_PREDICTED</option>
7064 <option value="REFSEQ_PEPTIDE" selected="true">REFSEQ_PEPTIDE</option>
7065 <option value="REFSEQ_PEPTIDE_PREDICTED" selected="true">REFSEQ_PEPTIDE_PREDICTED</option>
7066 <option value="RFAM" selected="true">RFAM</option>
7067 <option value="SO" selected="true">SO</option>
7068 <option value="SPD" selected="true">SPD</option>
7069 <option value="UNIPARC" selected="true">UNIPARC</option>
7070 <option value="UNIPROT" selected="true">UNIPROT</option>
7071 <option value="WIKIGENE" selected="true">WIKIGENE</option>
7072 <option value="description" selected="true">description</option>
7073 <option value="domain_source" selected="true">domain_source</option>
7074 <option value="exon" selected="true">exon</option>
7075 <option value="exon_count" selected="true">exon_count</option>
7076 <option value="featuretype" selected="true">featuretype</option>
7077 <option value="gene_name" selected="true">gene_name</option>
7078 <option value="gene_synonym" selected="true">gene_synonym</option>
7079 <option value="id" selected="true">id</option>
7080 <option value="name" selected="true">name</option>
7081 <option value="peptide" selected="true">peptide</option>
7082 <option value="source" selected="true">source</option>
7083 <option value="species" selected="true">species</option>
7084 <option value="system_name" selected="true">system_name</option>
7085 <option value="transcript" selected="true">transcript</option>
7086 <option value="transcript_count" selected="true">transcript_count</option>
7087 <validator type="no_options" message="Please select at least one field" />
7088 </param>
7089 <repeat name="queries" title="Add a query">
7090 <param name="combination_operation" type="select" label="Combination operation" >
7091 <option value="AND">AND</option>
7092 <option value="OR">OR</option>
7093 <option value="NOT">NOT</option>
7094 </param>
7095 <param name="query_field" type="select" label="Fields" >
7096 <option value="EC_NUMBER">EC_NUMBER</option>
7097 <option value="EMBL">EMBL</option>
7098 <option value="ENSEMBLVARIATION">ENSEMBLVARIATION</option>
7099 <option value="ENTREZGENE">ENTREZGENE</option>
7100 <option value="FYPO">FYPO</option>
7101 <option value="GO">GO</option>
7102 <option value="INTERPRO">INTERPRO</option>
7103 <option value="KEGG">KEGG</option>
7104 <option value="KEGG_ENZYME">KEGG_ENZYME</option>
7105 <option value="METACYC">METACYC</option>
7106 <option value="MOD">MOD</option>
7107 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
7108 <option value="PBO">PBO</option>
7109 <option value="PDB">PDB</option>
7110 <option value="POMBASE_GENE_NAME">POMBASE_GENE_NAME</option>
7111 <option value="POMBASE_ORTHOLOG">POMBASE_ORTHOLOG</option>
7112 <option value="POMBASE_TRANSCRIPT">POMBASE_TRANSCRIPT</option>
7113 <option value="POMBASE_TRANSLATION">POMBASE_TRANSLATION</option>
7114 <option value="PROTEIN_ID">PROTEIN_ID</option>
7115 <option value="PUBMED">PUBMED</option>
7116 <option value="PUBMED_POMBASE">PUBMED_POMBASE</option>
7117 <option value="REFSEQ_MRNA">REFSEQ_MRNA</option>
7118 <option value="REFSEQ_MRNA_PREDICTED">REFSEQ_MRNA_PREDICTED</option>
7119 <option value="REFSEQ_PEPTIDE">REFSEQ_PEPTIDE</option>
7120 <option value="REFSEQ_PEPTIDE_PREDICTED">REFSEQ_PEPTIDE_PREDICTED</option>
7121 <option value="RFAM">RFAM</option>
7122 <option value="SO">SO</option>
7123 <option value="SPD">SPD</option>
7124 <option value="UNIPARC">UNIPARC</option>
7125 <option value="UNIPROT">UNIPROT</option>
7126 <option value="WIKIGENE">WIKIGENE</option>
7127 <option value="database">database</option>
7128 <option value="description">description</option>
7129 <option value="domain">domain</option>
7130 <option value="domain_count">domain_count</option>
7131 <option value="domain_source">domain_source</option>
7132 <option value="exon">exon</option>
7133 <option value="gene_name">gene_name</option>
7134 <option value="gene_synonym">gene_synonym</option>
7135 <option value="genetree">genetree</option>
7136 <option value="genomic_unit">genomic_unit</option>
7137 <option value="haplotype">haplotype</option>
7138 <option value="id">id</option>
7139 <option value="id_noversion">id_noversion</option>
7140 <option value="location">location</option>
7141 <option value="name">name</option>
7142 <option value="peptide">peptide</option>
7143 <option value="seq_region_name">seq_region_name</option>
7144 <option value="source">source</option>
7145 <option value="species">species</option>
7146 <option value="system_name">system_name</option>
7147 <option value="transcript">transcript</option>
7148 </param>
7149 <conditional name="comp_operation">
7150 <param name="operation" type="select" label="Comparison operation" >
7151 <option value="equal">equal</option>
7152 <option value="not">not</option>
7153 <option value="range">range</option>
7154 </param>
7155 <when value="equal">
7156 <param name="query_text" type="text" label="Searched term"/>
7157 </when>
7158 <when value="not">
7159 <param name="query_text" type="text" label="Searched term"/>
7160 <param name="not_query_text" type="text" label="Limiting term"/>
7161 </when>
7162 <when value="range">
7163 <param name="min" type="text" label="From"/>
7164 <param name="max" type="text" label="To"/>
7165 </when>
7166 </conditional>
7167 </repeat>
7168 </when>
7169
7170 <when value="rnacentral">
7171 <param name="fields" type="select" label="Fields to extract" multiple="true">
7172 <option value="DICTYBASE" selected="true">DICTYBASE</option>
7173 <option value="DOI" selected="true">DOI</option>
7174 <option value="ECO" selected="true">ECO</option>
7175 <option value="ENA" selected="true">ENA</option>
7176 <option value="GO" selected="true">GO</option>
7177 <option value="GREENGENES" selected="true">GREENGENES</option>
7178 <option value="GTRNADB" selected="true">GTRNADB</option>
7179 <option value="LNCIPEDIA" selected="true">LNCIPEDIA</option>
7180 <option value="LNCRNADB" selected="true">LNCRNADB</option>
7181 <option value="MIRBASE" selected="true">MIRBASE</option>
7182 <option value="MODOMICS" selected="true">MODOMICS</option>
7183 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
7184 <option value="NONCODE" selected="true">NONCODE</option>
7185 <option value="PDBE" selected="true">PDBE</option>
7186 <option value="POMBASE" selected="true">POMBASE</option>
7187 <option value="PUBMED" selected="true">PUBMED</option>
7188 <option value="RDP" selected="true">RDP</option>
7189 <option value="REFSEQ" selected="true">REFSEQ</option>
7190 <option value="RFAM" selected="true">RFAM</option>
7191 <option value="SGD" selected="true">SGD</option>
7192 <option value="SILVA" selected="true">SILVA</option>
7193 <option value="SNOPY" selected="true">SNOPY</option>
7194 <option value="SO" selected="true">SO</option>
7195 <option value="SRPDB" selected="true">SRPDB</option>
7196 <option value="TAIR" selected="true">TAIR</option>
7197 <option value="TMRNA_WEBSITE" selected="true">TMRNA_WEBSITE</option>
7198 <option value="VEGA" selected="true">VEGA</option>
7199 <option value="WORMBASE" selected="true">WORMBASE</option>
7200 <option value="active" selected="true">active</option>
7201 <option value="boost" selected="true">boost</option>
7202 <option value="common_name" selected="true">common_name</option>
7203 <option value="description" selected="true">description</option>
7204 <option value="domain_source" selected="true">domain_source</option>
7205 <option value="expert_db" selected="true">expert_db</option>
7206 <option value="gene" selected="true">gene</option>
7207 <option value="gene_synonym" selected="true">gene_synonym</option>
7208 <option value="has_genomic_coordinates" selected="true">has_genomic_coordinates</option>
7209 <option value="id" selected="true">id</option>
7210 <option value="length" selected="true">length</option>
7211 <option value="n_citations" selected="true">n_citations</option>
7212 <option value="n_xrefs" selected="true">n_xrefs</option>
7213 <option value="name" selected="true">name</option>
7214 <option value="organelle" selected="true">organelle</option>
7215 <option value="product" selected="true">product</option>
7216 <option value="pub_title" selected="true">pub_title</option>
7217 <option value="rna_type" selected="true">rna_type</option>
7218 <option value="species" selected="true">species</option>
7219 <validator type="no_options" message="Please select at least one field" />
7220 </param>
7221 <repeat name="queries" title="Add a query">
7222 <param name="combination_operation" type="select" label="Combination operation" >
7223 <option value="AND">AND</option>
7224 <option value="OR">OR</option>
7225 <option value="NOT">NOT</option>
7226 </param>
7227 <param name="query_field" type="select" label="Fields" >
7228 <option value="DICTYBASE">DICTYBASE</option>
7229 <option value="DOI">DOI</option>
7230 <option value="ECO">ECO</option>
7231 <option value="ENA">ENA</option>
7232 <option value="GO">GO</option>
7233 <option value="GREENGENES">GREENGENES</option>
7234 <option value="GTRNADB">GTRNADB</option>
7235 <option value="LNCIPEDIA">LNCIPEDIA</option>
7236 <option value="LNCRNADB">LNCRNADB</option>
7237 <option value="MIRBASE">MIRBASE</option>
7238 <option value="MODOMICS">MODOMICS</option>
7239 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
7240 <option value="NONCODE">NONCODE</option>
7241 <option value="PDBE">PDBE</option>
7242 <option value="POMBASE">POMBASE</option>
7243 <option value="PUBMED">PUBMED</option>
7244 <option value="RDP">RDP</option>
7245 <option value="REFSEQ">REFSEQ</option>
7246 <option value="RFAM">RFAM</option>
7247 <option value="SGD">SGD</option>
7248 <option value="SILVA">SILVA</option>
7249 <option value="SNOPY">SNOPY</option>
7250 <option value="SO">SO</option>
7251 <option value="SRPDB">SRPDB</option>
7252 <option value="TAIR">TAIR</option>
7253 <option value="TMRNA_WEBSITE">TMRNA_WEBSITE</option>
7254 <option value="VEGA">VEGA</option>
7255 <option value="WORMBASE">WORMBASE</option>
7256 <option value="active">active</option>
7257 <option value="author">author</option>
7258 <option value="boost">boost</option>
7259 <option value="common_name">common_name</option>
7260 <option value="description">description</option>
7261 <option value="domain_source">domain_source</option>
7262 <option value="expert_db">expert_db</option>
7263 <option value="first_seen_date">first_seen_date</option>
7264 <option value="function">function</option>
7265 <option value="gene">gene</option>
7266 <option value="gene_synonym">gene_synonym</option>
7267 <option value="has_genomic_coordinates">has_genomic_coordinates</option>
7268 <option value="id">id</option>
7269 <option value="insdc_submission">insdc_submission</option>
7270 <option value="journal">journal</option>
7271 <option value="last_seen_date">last_seen_date</option>
7272 <option value="length">length</option>
7273 <option value="md5">md5</option>
7274 <option value="n_citations">n_citations</option>
7275 <option value="n_xrefs">n_xrefs</option>
7276 <option value="name">name</option>
7277 <option value="organelle">organelle</option>
7278 <option value="popular_species">popular_species</option>
7279 <option value="product">product</option>
7280 <option value="pub_id">pub_id</option>
7281 <option value="pub_title">pub_title</option>
7282 <option value="rna_type">rna_type</option>
7283 <option value="species">species</option>
7284 </param>
7285 <conditional name="comp_operation">
7286 <param name="operation" type="select" label="Comparison operation" >
7287 <option value="equal">equal</option>
7288 <option value="not">not</option>
7289 <option value="range">range</option>
7290 </param>
7291 <when value="equal">
7292 <param name="query_text" type="text" label="Searched term"/>
7293 </when>
7294 <when value="not">
7295 <param name="query_text" type="text" label="Searched term"/>
7296 <param name="not_query_text" type="text" label="Limiting term"/>
7297 </when>
7298 <when value="range">
7299 <param name="min" type="text" label="From"/>
7300 <param name="max" type="text" label="To"/>
7301 </when>
7302 </conditional>
7303 </repeat>
7304 </when>
7305
7306 <when value="reactome">
7307 <param name="fields" type="select" label="Fields to extract" multiple="true">
7308 <option value="ARACYC" selected="true">ARACYC</option>
7309 <option value="BIOMODELS_DATABASE" selected="true">BIOMODELS_DATABASE</option>
7310 <option value="CAS" selected="true">CAS</option>
7311 <option value="CHEBI" selected="true">CHEBI</option>
7312 <option value="COMPOUND" selected="true">COMPOUND</option>
7313 <option value="COSMIC" selected="true">COSMIC</option>
7314 <option value="DOCK_BLASTER" selected="true">DOCK_BLASTER</option>
7315 <option value="DOID" selected="true">DOID</option>
7316 <option value="EC" selected="true">EC</option>
7317 <option value="EMBL" selected="true">EMBL</option>
7318 <option value="ENSEMBL" selected="true">ENSEMBL</option>
7319 <option value="GENECARDS" selected="true">GENECARDS</option>
7320 <option value="GO" selected="true">GO</option>
7321 <option value="HMDB_METABOLITE" selected="true">HMDB_METABOLITE</option>
7322 <option value="HMDB_PROTEIN" selected="true">HMDB_PROTEIN</option>
7323 <option value="INTACT" selected="true">INTACT</option>
7324 <option value="KEGG_GENE" selected="true">KEGG_GENE</option>
7325 <option value="KEGG_GLYCAN" selected="true">KEGG_GLYCAN</option>
7326 <option value="KNAPSACK" selected="true">KNAPSACK</option>
7327 <option value="MIRBASE" selected="true">MIRBASE</option>
7328 <option value="NCBI_NUCLEOTIDE" selected="true">NCBI_NUCLEOTIDE</option>
7329 <option value="NCBI_PROTEIN" selected="true">NCBI_PROTEIN</option>
7330 <option value="OMIM" selected="true">OMIM</option>
7331 <option value="PRF" selected="true">PRF</option>
7332 <option value="PRO" selected="true">PRO</option>
7333 <option value="PROTEIN_DATA_BANK" selected="true">PROTEIN_DATA_BANK</option>
7334 <option value="PUBCHEM" selected="true">PUBCHEM</option>
7335 <option value="PUBCHEM_COMPOUND" selected="true">PUBCHEM_COMPOUND</option>
7336 <option value="PUBCHEM_SUBSTANCE" selected="true">PUBCHEM_SUBSTANCE</option>
7337 <option value="PUBMED" selected="true">PUBMED</option>
7338 <option value="REFSEQ" selected="true">REFSEQ</option>
7339 <option value="RHEA" selected="true">RHEA</option>
7340 <option value="RICECYC" selected="true">RICECYC</option>
7341 <option value="SVENCYC" selected="true">SVENCYC</option>
7342 <option value="TAXONOMY" selected="true">TAXONOMY</option>
7343 <option value="UCSC_HUMAN" selected="true">UCSC_HUMAN</option>
7344 <option value="UNIPROT" selected="true">UNIPROT</option>
7345 <option value="WIKIPEDIA" selected="true">WIKIPEDIA</option>
7346 <option value="ZINC" selected="true">ZINC</option>
7347 <option value="ZINC_TARGET" selected="true">ZINC_TARGET</option>
7348 <option value="description" selected="true">description</option>
7349 <option value="domain_source" selected="true">domain_source</option>
7350 <option value="external_reference_other_identifier" selected="true">external_reference_other_identifier</option>
7351 <option value="id" selected="true">id</option>
7352 <option value="inferred_summation" selected="true">inferred_summation</option>
7353 <option value="name" selected="true">name</option>
7354 <option value="species" selected="true">species</option>
7355 <option value="stid" selected="true">stid</option>
7356 <option value="type" selected="true">type</option>
7357 <validator type="no_options" message="Please select at least one field" />
7358 </param>
7359 <repeat name="queries" title="Add a query">
7360 <param name="combination_operation" type="select" label="Combination operation" >
7361 <option value="AND">AND</option>
7362 <option value="OR">OR</option>
7363 <option value="NOT">NOT</option>
7364 </param>
7365 <param name="query_field" type="select" label="Fields" >
7366 <option value="ARACYC">ARACYC</option>
7367 <option value="BIOMODELS_DATABASE">BIOMODELS_DATABASE</option>
7368 <option value="CAS">CAS</option>
7369 <option value="CHEBI">CHEBI</option>
7370 <option value="COMPOUND">COMPOUND</option>
7371 <option value="COSMIC">COSMIC</option>
7372 <option value="DOCK_BLASTER">DOCK_BLASTER</option>
7373 <option value="DOID">DOID</option>
7374 <option value="EC">EC</option>
7375 <option value="EMBL">EMBL</option>
7376 <option value="ENSEMBL">ENSEMBL</option>
7377 <option value="GENECARDS">GENECARDS</option>
7378 <option value="GO">GO</option>
7379 <option value="HMDB_METABOLITE">HMDB_METABOLITE</option>
7380 <option value="HMDB_PROTEIN">HMDB_PROTEIN</option>
7381 <option value="INTACT">INTACT</option>
7382 <option value="KEGG_GENE">KEGG_GENE</option>
7383 <option value="KEGG_GLYCAN">KEGG_GLYCAN</option>
7384 <option value="KNAPSACK">KNAPSACK</option>
7385 <option value="MIRBASE">MIRBASE</option>
7386 <option value="NCBI_NUCLEOTIDE">NCBI_NUCLEOTIDE</option>
7387 <option value="NCBI_PROTEIN">NCBI_PROTEIN</option>
7388 <option value="OMIM">OMIM</option>
7389 <option value="PRF">PRF</option>
7390 <option value="PRO">PRO</option>
7391 <option value="PROTEIN_DATA_BANK">PROTEIN_DATA_BANK</option>
7392 <option value="PUBCHEM">PUBCHEM</option>
7393 <option value="PUBCHEM_COMPOUND">PUBCHEM_COMPOUND</option>
7394 <option value="PUBCHEM_SUBSTANCE">PUBCHEM_SUBSTANCE</option>
7395 <option value="PUBMED">PUBMED</option>
7396 <option value="REFSEQ">REFSEQ</option>
7397 <option value="RHEA">RHEA</option>
7398 <option value="RICECYC">RICECYC</option>
7399 <option value="SVENCYC">SVENCYC</option>
7400 <option value="TAXONOMY">TAXONOMY</option>
7401 <option value="UCSC_HUMAN">UCSC_HUMAN</option>
7402 <option value="UNIPROT">UNIPROT</option>
7403 <option value="WIKIPEDIA">WIKIPEDIA</option>
7404 <option value="ZINC">ZINC</option>
7405 <option value="ZINC_TARGET">ZINC_TARGET</option>
7406 <option value="compartment_name">compartment_name</option>
7407 <option value="description">description</option>
7408 <option value="disease_name">disease_name</option>
7409 <option value="disease_synonym">disease_synonym</option>
7410 <option value="domain_source">domain_source</option>
7411 <option value="external_reference_name">external_reference_name</option>
7412 <option value="external_reference_other_identifier">external_reference_other_identifier</option>
7413 <option value="external_reference_synonym">external_reference_synonym</option>
7414 <option value="gene_names">gene_names</option>
7415 <option value="go_biological_process_name">go_biological_process_name</option>
7416 <option value="go_molecular_function_name">go_molecular_function_name</option>
7417 <option value="id">id</option>
7418 <option value="keyword">keyword</option>
7419 <option value="literature_reference_title">literature_reference_title</option>
7420 <option value="name">name</option>
7421 <option value="oldstid">oldstid</option>
7422 <option value="regulated_entity">regulated_entity</option>
7423 <option value="regulator">regulator</option>
7424 <option value="related_species">related_species</option>
7425 <option value="species">species</option>
7426 <option value="stid">stid</option>
7427 <option value="synonym">synonym</option>
7428 <option value="type">type</option>
7429 </param>
7430 <conditional name="comp_operation">
7431 <param name="operation" type="select" label="Comparison operation" >
7432 <option value="equal">equal</option>
7433 <option value="not">not</option>
7434 <option value="range">range</option>
7435 </param>
7436 <when value="equal">
7437 <param name="query_text" type="text" label="Searched term"/>
7438 </when>
7439 <when value="not">
7440 <param name="query_text" type="text" label="Searched term"/>
7441 <param name="not_query_text" type="text" label="Limiting term"/>
7442 </when>
7443 <when value="range">
7444 <param name="min" type="text" label="From"/>
7445 <param name="max" type="text" label="To"/>
7446 </when>
7447 </conditional>
7448 </repeat>
7449 </when>
7450
7451 <when value="sra-experiment">
7452 <param name="fields" type="select" label="Fields to extract" multiple="true">
7453 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
7454 <option value="PROJECT" selected="true">PROJECT</option>
7455 <option value="SAMPLE" selected="true">SAMPLE</option>
7456 <option value="SRA-RUN" selected="true">SRA-RUN</option>
7457 <option value="SRA-SAMPLE" selected="true">SRA-SAMPLE</option>
7458 <option value="SRA-STUDY" selected="true">SRA-STUDY</option>
7459 <option value="SRA-SUBMISSION" selected="true">SRA-SUBMISSION</option>
7460 <option value="description" selected="true">description</option>
7461 <option value="domain_source" selected="true">domain_source</option>
7462 <option value="id" selected="true">id</option>
7463 <validator type="no_options" message="Please select at least one field" />
7464 </param>
7465 <repeat name="queries" title="Add a query">
7466 <param name="combination_operation" type="select" label="Combination operation" >
7467 <option value="AND">AND</option>
7468 <option value="OR">OR</option>
7469 <option value="NOT">NOT</option>
7470 </param>
7471 <param name="query_field" type="select" label="Fields" >
7472 <option value="BIOSAMPLE">BIOSAMPLE</option>
7473 <option value="PROJECT">PROJECT</option>
7474 <option value="SAMPLE">SAMPLE</option>
7475 <option value="SRA-RUN">SRA-RUN</option>
7476 <option value="SRA-SAMPLE">SRA-SAMPLE</option>
7477 <option value="SRA-STUDY">SRA-STUDY</option>
7478 <option value="SRA-SUBMISSION">SRA-SUBMISSION</option>
7479 <option value="abstract">abstract</option>
7480 <option value="acc">acc</option>
7481 <option value="alias">alias</option>
7482 <option value="center_name">center_name</option>
7483 <option value="description">description</option>
7484 <option value="domain_source">domain_source</option>
7485 <option value="id">id</option>
7486 <option value="instrument_model">instrument_model</option>
7487 <option value="library_name">library_name</option>
7488 <option value="library_selection">library_selection</option>
7489 <option value="library_source">library_source</option>
7490 <option value="library_strategy">library_strategy</option>
7491 </param>
7492 <conditional name="comp_operation">
7493 <param name="operation" type="select" label="Comparison operation" >
7494 <option value="equal">equal</option>
7495 <option value="not">not</option>
7496 <option value="range">range</option>
7497 </param>
7498 <when value="equal">
7499 <param name="query_text" type="text" label="Searched term"/>
7500 </when>
7501 <when value="not">
7502 <param name="query_text" type="text" label="Searched term"/>
7503 <param name="not_query_text" type="text" label="Limiting term"/>
7504 </when>
7505 <when value="range">
7506 <param name="min" type="text" label="From"/>
7507 <param name="max" type="text" label="To"/>
7508 </when>
7509 </conditional>
7510 </repeat>
7511 </when>
7512
7513 <when value="sra-run">
7514 <param name="fields" type="select" label="Fields to extract" multiple="true">
7515 <option value="SRA-EXPERIMENT" selected="true">SRA-EXPERIMENT</option>
7516 <option value="SRA-SAMPLE" selected="true">SRA-SAMPLE</option>
7517 <option value="SRA-STUDY" selected="true">SRA-STUDY</option>
7518 <option value="SRA-SUBMISSION" selected="true">SRA-SUBMISSION</option>
7519 <option value="description" selected="true">description</option>
7520 <option value="domain_source" selected="true">domain_source</option>
7521 <option value="id" selected="true">id</option>
7522 <validator type="no_options" message="Please select at least one field" />
7523 </param>
7524 <repeat name="queries" title="Add a query">
7525 <param name="combination_operation" type="select" label="Combination operation" >
7526 <option value="AND">AND</option>
7527 <option value="OR">OR</option>
7528 <option value="NOT">NOT</option>
7529 </param>
7530 <param name="query_field" type="select" label="Fields" >
7531 <option value="SRA-EXPERIMENT">SRA-EXPERIMENT</option>
7532 <option value="SRA-SAMPLE">SRA-SAMPLE</option>
7533 <option value="SRA-STUDY">SRA-STUDY</option>
7534 <option value="SRA-SUBMISSION">SRA-SUBMISSION</option>
7535 <option value="acc">acc</option>
7536 <option value="alias">alias</option>
7537 <option value="center_name">center_name</option>
7538 <option value="description">description</option>
7539 <option value="domain_source">domain_source</option>
7540 <option value="id">id</option>
7541 </param>
7542 <conditional name="comp_operation">
7543 <param name="operation" type="select" label="Comparison operation" >
7544 <option value="equal">equal</option>
7545 <option value="not">not</option>
7546 <option value="range">range</option>
7547 </param>
7548 <when value="equal">
7549 <param name="query_text" type="text" label="Searched term"/>
7550 </when>
7551 <when value="not">
7552 <param name="query_text" type="text" label="Searched term"/>
7553 <param name="not_query_text" type="text" label="Limiting term"/>
7554 </when>
7555 <when value="range">
7556 <param name="min" type="text" label="From"/>
7557 <param name="max" type="text" label="To"/>
7558 </when>
7559 </conditional>
7560 </repeat>
7561 </when>
7562
7563 <when value="ebiweb_resources">
7564 <param name="fields" type="select" label="Fields to extract" multiple="true">
7565 <option value="description" selected="true">description</option>
7566 <option value="domain_source" selected="true">domain_source</option>
7567 <option value="id" selected="true">id</option>
7568 <option value="logo" selected="true">logo</option>
7569 <option value="name" selected="true">name</option>
7570 <option value="short_name" selected="true">short_name</option>
7571 <option value="thumbnail" selected="true">thumbnail</option>
7572 <option value="url" selected="true">url</option>
7573 <validator type="no_options" message="Please select at least one field" />
7574 </param>
7575 <repeat name="queries" title="Add a query">
7576 <param name="combination_operation" type="select" label="Combination operation" >
7577 <option value="AND">AND</option>
7578 <option value="OR">OR</option>
7579 <option value="NOT">NOT</option>
7580 </param>
7581 <param name="query_field" type="select" label="Fields" >
7582 <option value="activity">activity</option>
7583 <option value="category">category</option>
7584 <option value="cluster">cluster</option>
7585 <option value="description">description</option>
7586 <option value="domain">domain</option>
7587 <option value="domain_source">domain_source</option>
7588 <option value="id">id</option>
7589 <option value="keywords">keywords</option>
7590 <option value="long_description">long_description</option>
7591 <option value="name">name</option>
7592 <option value="short_name">short_name</option>
7593 </param>
7594 <conditional name="comp_operation">
7595 <param name="operation" type="select" label="Comparison operation" >
7596 <option value="equal">equal</option>
7597 <option value="not">not</option>
7598 <option value="range">range</option>
7599 </param>
7600 <when value="equal">
7601 <param name="query_text" type="text" label="Searched term"/>
7602 </when>
7603 <when value="not">
7604 <param name="query_text" type="text" label="Searched term"/>
7605 <param name="not_query_text" type="text" label="Limiting term"/>
7606 </when>
7607 <when value="range">
7608 <param name="min" type="text" label="From"/>
7609 <param name="max" type="text" label="To"/>
7610 </when>
7611 </conditional>
7612 </repeat>
7613 </when>
7614
7615 <when value="rhea">
7616 <param name="fields" type="select" label="Fields to extract" multiple="true">
7617 <option value="CHEBI" selected="true">CHEBI</option>
7618 <option value="CITATION" selected="true">CITATION</option>
7619 <option value="ECOCYC" selected="true">ECOCYC</option>
7620 <option value="INTENZ" selected="true">INTENZ</option>
7621 <option value="KEGG_REACTION" selected="true">KEGG_REACTION</option>
7622 <option value="MACIE" selected="true">MACIE</option>
7623 <option value="METACYC" selected="true">METACYC</option>
7624 <option value="REACTOME" selected="true">REACTOME</option>
7625 <option value="UNIPATHWAY" selected="true">UNIPATHWAY</option>
7626 <option value="UNIPROT" selected="true">UNIPROT</option>
7627 <option value="acc" selected="true">acc</option>
7628 <option value="chebiIdEquation" selected="true">chebiIdEquation</option>
7629 <option value="domain_source" selected="true">domain_source</option>
7630 <option value="id" selected="true">id</option>
7631 <option value="name" selected="true">name</option>
7632 <validator type="no_options" message="Please select at least one field" />
7633 </param>
7634 <repeat name="queries" title="Add a query">
7635 <param name="combination_operation" type="select" label="Combination operation" >
7636 <option value="AND">AND</option>
7637 <option value="OR">OR</option>
7638 <option value="NOT">NOT</option>
7639 </param>
7640 <param name="query_field" type="select" label="Fields" >
7641 <option value="CHEBI">CHEBI</option>
7642 <option value="CITATION">CITATION</option>
7643 <option value="ECOCYC">ECOCYC</option>
7644 <option value="INTENZ">INTENZ</option>
7645 <option value="KEGG_REACTION">KEGG_REACTION</option>
7646 <option value="MACIE">MACIE</option>
7647 <option value="METACYC">METACYC</option>
7648 <option value="REACTOME">REACTOME</option>
7649 <option value="UNIPATHWAY">UNIPATHWAY</option>
7650 <option value="UNIPROT">UNIPROT</option>
7651 <option value="acc">acc</option>
7652 <option value="comment">comment</option>
7653 <option value="domain_source">domain_source</option>
7654 <option value="id">id</option>
7655 <option value="name">name</option>
7656 </param>
7657 <conditional name="comp_operation">
7658 <param name="operation" type="select" label="Comparison operation" >
7659 <option value="equal">equal</option>
7660 <option value="not">not</option>
7661 <option value="range">range</option>
7662 </param>
7663 <when value="equal">
7664 <param name="query_text" type="text" label="Searched term"/>
7665 </when>
7666 <when value="not">
7667 <param name="query_text" type="text" label="Searched term"/>
7668 <param name="not_query_text" type="text" label="Limiting term"/>
7669 </when>
7670 <when value="range">
7671 <param name="min" type="text" label="From"/>
7672 <param name="max" type="text" label="To"/>
7673 </when>
7674 </conditional>
7675 </repeat>
7676 </when>
7677
7678 <when value="sbo">
7679 <param name="fields" type="select" label="Fields to extract" multiple="true">
7680 <option value="SBO" selected="true">SBO</option>
7681 <option value="description" selected="true">description</option>
7682 <option value="domain_source" selected="true">domain_source</option>
7683 <option value="id" selected="true">id</option>
7684 <option value="name" selected="true">name</option>
7685 <validator type="no_options" message="Please select at least one field" />
7686 </param>
7687 <repeat name="queries" title="Add a query">
7688 <param name="combination_operation" type="select" label="Combination operation" >
7689 <option value="AND">AND</option>
7690 <option value="OR">OR</option>
7691 <option value="NOT">NOT</option>
7692 </param>
7693 <param name="query_field" type="select" label="Fields" >
7694 <option value="SBO">SBO</option>
7695 <option value="comment">comment</option>
7696 <option value="description">description</option>
7697 <option value="domain_source">domain_source</option>
7698 <option value="id">id</option>
7699 <option value="name">name</option>
7700 <option value="namespace">namespace</option>
7701 <option value="synonym">synonym</option>
7702 </param>
7703 <conditional name="comp_operation">
7704 <param name="operation" type="select" label="Comparison operation" >
7705 <option value="equal">equal</option>
7706 <option value="not">not</option>
7707 <option value="range">range</option>
7708 </param>
7709 <when value="equal">
7710 <param name="query_text" type="text" label="Searched term"/>
7711 </when>
7712 <when value="not">
7713 <param name="query_text" type="text" label="Searched term"/>
7714 <param name="not_query_text" type="text" label="Limiting term"/>
7715 </when>
7716 <when value="range">
7717 <param name="min" type="text" label="From"/>
7718 <param name="max" type="text" label="To"/>
7719 </when>
7720 </conditional>
7721 </repeat>
7722 </when>
7723
7724 <when value="sra-sample">
7725 <param name="fields" type="select" label="Fields to extract" multiple="true">
7726 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
7727 <option value="SRA-SUBMISSION" selected="true">SRA-SUBMISSION</option>
7728 <option value="TAXON" selected="true">TAXON</option>
7729 <option value="acc" selected="true">acc</option>
7730 <option value="common_name" selected="true">common_name</option>
7731 <option value="description" selected="true">description</option>
7732 <option value="domain_source" selected="true">domain_source</option>
7733 <option value="id" selected="true">id</option>
7734 <option value="scientific_name" selected="true">scientific_name</option>
7735 <validator type="no_options" message="Please select at least one field" />
7736 </param>
7737 <repeat name="queries" title="Add a query">
7738 <param name="combination_operation" type="select" label="Combination operation" >
7739 <option value="AND">AND</option>
7740 <option value="OR">OR</option>
7741 <option value="NOT">NOT</option>
7742 </param>
7743 <param name="query_field" type="select" label="Fields" >
7744 <option value="BIOSAMPLE">BIOSAMPLE</option>
7745 <option value="ENA-CHECKLIST">ENA-CHECKLIST</option>
7746 <option value="SRA-SUBMISSION">SRA-SUBMISSION</option>
7747 <option value="TAXON">TAXON</option>
7748 <option value="abstract">abstract</option>
7749 <option value="acc">acc</option>
7750 <option value="alias">alias</option>
7751 <option value="center_name">center_name</option>
7752 <option value="common_name">common_name</option>
7753 <option value="description">description</option>
7754 <option value="domain_source">domain_source</option>
7755 <option value="id">id</option>
7756 <option value="keywords">keywords</option>
7757 <option value="scientific_name">scientific_name</option>
7758 <option value="secondary_id">secondary_id</option>
7759 </param>
7760 <conditional name="comp_operation">
7761 <param name="operation" type="select" label="Comparison operation" >
7762 <option value="equal">equal</option>
7763 <option value="not">not</option>
7764 <option value="range">range</option>
7765 </param>
7766 <when value="equal">
7767 <param name="query_text" type="text" label="Searched term"/>
7768 </when>
7769 <when value="not">
7770 <param name="query_text" type="text" label="Searched term"/>
7771 <param name="not_query_text" type="text" label="Limiting term"/>
7772 </when>
7773 <when value="range">
7774 <param name="min" type="text" label="From"/>
7775 <param name="max" type="text" label="To"/>
7776 </when>
7777 </conditional>
7778 </repeat>
7779 </when>
7780
7781 <when value="emblrelease_standard">
7782 <param name="fields" type="select" label="Fields to extract" multiple="true">
7783 <option value="AGRICOLA" selected="true">AGRICOLA</option>
7784 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
7785 <option value="CABRI" selected="true">CABRI</option>
7786 <option value="CCAP" selected="true">CCAP</option>
7787 <option value="COMPARE-REFGENOME" selected="true">COMPARE-REFGENOME</option>
7788 <option value="DOI" selected="true">DOI</option>
7789 <option value="EC" selected="true">EC</option>
7790 <option value="EMBL-TSA" selected="true">EMBL-TSA</option>
7791 <option value="EMBLCDS" selected="true">EMBLCDS</option>
7792 <option value="ENA" selected="true">ENA</option>
7793 <option value="ENA-CON" selected="true">ENA-CON</option>
7794 <option value="ENSEMBL-GN" selected="true">ENSEMBL-GN</option>
7795 <option value="ENSEMBLGENOMES-GN" selected="true">ENSEMBLGENOMES-GN</option>
7796 <option value="EPD" selected="true">EPD</option>
7797 <option value="EUROPEPMC" selected="true">EUROPEPMC</option>
7798 <option value="FLYBASE" selected="true">FLYBASE</option>
7799 <option value="GENEDB" selected="true">GENEDB</option>
7800 <option value="GOA" selected="true">GOA</option>
7801 <option value="GRAINGENES" selected="true">GRAINGENES</option>
7802 <option value="GTRNADB" selected="true">GTRNADB</option>
7803 <option value="H-INVDB" selected="true">H-INVDB</option>
7804 <option value="HGNC" selected="true">HGNC</option>
7805 <option value="INTERPRO" selected="true">INTERPRO</option>
7806 <option value="IPD-KIR" selected="true">IPD-KIR</option>
7807 <option value="IPD-MHC" selected="true">IPD-MHC</option>
7808 <option value="ISHAM-ITS" selected="true">ISHAM-ITS</option>
7809 <option value="LNCRNADB" selected="true">LNCRNADB</option>
7810 <option value="MGI" selected="true">MGI</option>
7811 <option value="MIRBASE" selected="true">MIRBASE</option>
7812 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
7813 <option value="PDB" selected="true">PDB</option>
7814 <option value="PLNCDB" selected="true">PLNCDB</option>
7815 <option value="POMBASE" selected="true">POMBASE</option>
7816 <option value="PUBMED" selected="true">PUBMED</option>
7817 <option value="RFAM" selected="true">RFAM</option>
7818 <option value="SGD" selected="true">SGD</option>
7819 <option value="SILVA-LSU" selected="true">SILVA-LSU</option>
7820 <option value="SILVA-SSU" selected="true">SILVA-SSU</option>
7821 <option value="SNOPYDB" selected="true">SNOPYDB</option>
7822 <option value="SRPDB" selected="true">SRPDB</option>
7823 <option value="STRAININFO" selected="true">STRAININFO</option>
7824 <option value="SUBTILIST" selected="true">SUBTILIST</option>
7825 <option value="TAIR" selected="true">TAIR</option>
7826 <option value="TAXON" selected="true">TAXON</option>
7827 <option value="TMRNA-WEBSITE" selected="true">TMRNA-WEBSITE</option>
7828 <option value="UNILIB" selected="true">UNILIB</option>
7829 <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
7830 <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
7831 <option value="UNITE" selected="true">UNITE</option>
7832 <option value="VBASE2" selected="true">VBASE2</option>
7833 <option value="VEGA-GN" selected="true">VEGA-GN</option>
7834 <option value="VEGA-TR" selected="true">VEGA-TR</option>
7835 <option value="WORMBASE" selected="true">WORMBASE</option>
7836 <option value="ZFIN" selected="true">ZFIN</option>
7837 <option value="acc" selected="true">acc</option>
7838 <option value="description" selected="true">description</option>
7839 <option value="domain_source" selected="true">domain_source</option>
7840 <option value="id" selected="true">id</option>
7841 <validator type="no_options" message="Please select at least one field" />
7842 </param>
7843 <repeat name="queries" title="Add a query">
7844 <param name="combination_operation" type="select" label="Combination operation" >
7845 <option value="AND">AND</option>
7846 <option value="OR">OR</option>
7847 <option value="NOT">NOT</option>
7848 </param>
7849 <param name="query_field" type="select" label="Fields" >
7850 <option value="AGRICOLA">AGRICOLA</option>
7851 <option value="BIOSAMPLE">BIOSAMPLE</option>
7852 <option value="CABRI">CABRI</option>
7853 <option value="CCAP">CCAP</option>
7854 <option value="COMPARE-REFGENOME">COMPARE-REFGENOME</option>
7855 <option value="DOI">DOI</option>
7856 <option value="EC">EC</option>
7857 <option value="EMBL-TSA">EMBL-TSA</option>
7858 <option value="EMBLCDS">EMBLCDS</option>
7859 <option value="EMBLCDS_version">EMBLCDS_version</option>
7860 <option value="ENA">ENA</option>
7861 <option value="ENA-CON">ENA-CON</option>
7862 <option value="ENSEMBL-GN">ENSEMBL-GN</option>
7863 <option value="ENSEMBL-SCAFFOLDS">ENSEMBL-SCAFFOLDS</option>
7864 <option value="ENSEMBL-TR">ENSEMBL-TR</option>
7865 <option value="ENSEMBLGENOMES-GN">ENSEMBLGENOMES-GN</option>
7866 <option value="ENSEMBLGENOMES-TR">ENSEMBLGENOMES-TR</option>
7867 <option value="EPD">EPD</option>
7868 <option value="EUROPEPMC">EUROPEPMC</option>
7869 <option value="FLYBASE">FLYBASE</option>
7870 <option value="GENEDB">GENEDB</option>
7871 <option value="GOA">GOA</option>
7872 <option value="GRAINGENES">GRAINGENES</option>
7873 <option value="GTRNADB">GTRNADB</option>
7874 <option value="H-INVDB">H-INVDB</option>
7875 <option value="HGNC">HGNC</option>
7876 <option value="IMGT_HLA">IMGT_HLA</option>
7877 <option value="IMGT_LIGM">IMGT_LIGM</option>
7878 <option value="INTERPRO">INTERPRO</option>
7879 <option value="IPD-KIR">IPD-KIR</option>
7880 <option value="IPD-MHC">IPD-MHC</option>
7881 <option value="ISHAM-ITS">ISHAM-ITS</option>
7882 <option value="LNCRNADB">LNCRNADB</option>
7883 <option value="MD5">MD5</option>
7884 <option value="MGI">MGI</option>
7885 <option value="MIRBASE">MIRBASE</option>
7886 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
7887 <option value="PDB">PDB</option>
7888 <option value="PLNCDB">PLNCDB</option>
7889 <option value="POMBASE">POMBASE</option>
7890 <option value="PR2">PR2</option>
7891 <option value="PROJECT">PROJECT</option>
7892 <option value="PSEUDO">PSEUDO</option>
7893 <option value="PUBMED">PUBMED</option>
7894 <option value="RFAM">RFAM</option>
7895 <option value="SGD">SGD</option>
7896 <option value="SILVA-LSU">SILVA-LSU</option>
7897 <option value="SILVA-SSU">SILVA-SSU</option>
7898 <option value="SNOPYDB">SNOPYDB</option>
7899 <option value="SRPDB">SRPDB</option>
7900 <option value="STRAININFO">STRAININFO</option>
7901 <option value="SUBTILIST">SUBTILIST</option>
7902 <option value="TAIR">TAIR</option>
7903 <option value="TAXON">TAXON</option>
7904 <option value="TMRNA-WEBSITE">TMRNA-WEBSITE</option>
7905 <option value="UNILIB">UNILIB</option>
7906 <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
7907 <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
7908 <option value="UNITE">UNITE</option>
7909 <option value="VBASE2">VBASE2</option>
7910 <option value="VEGA-GN">VEGA-GN</option>
7911 <option value="VEGA-TR">VEGA-TR</option>
7912 <option value="WORMBASE">WORMBASE</option>
7913 <option value="ZFIN">ZFIN</option>
7914 <option value="acc">acc</option>
7915 <option value="bio_material">bio_material</option>
7916 <option value="creation_date">creation_date</option>
7917 <option value="culture_collection">culture_collection</option>
7918 <option value="data_class">data_class</option>
7919 <option value="description">description</option>
7920 <option value="division">division</option>
7921 <option value="domain_source">domain_source</option>
7922 <option value="gene">gene</option>
7923 <option value="gene_synonym">gene_synonym</option>
7924 <option value="id">id</option>
7925 <option value="keywords">keywords</option>
7926 <option value="last_modification_date">last_modification_date</option>
7927 <option value="length">length</option>
7928 <option value="locus_tag">locus_tag</option>
7929 <option value="molecule_type">molecule_type</option>
7930 <option value="old_locus_tag">old_locus_tag</option>
7931 <option value="organelle">organelle</option>
7932 <option value="organism">organism</option>
7933 <option value="organism_classification">organism_classification</option>
7934 <option value="organism_species">organism_species</option>
7935 <option value="product">product</option>
7936 <option value="references">references</option>
7937 <option value="sequence_version">sequence_version</option>
7938 <option value="specimen_voucher">specimen_voucher</option>
7939 <option value="topology">topology</option>
7940 </param>
7941 <conditional name="comp_operation">
7942 <param name="operation" type="select" label="Comparison operation" >
7943 <option value="equal">equal</option>
7944 <option value="not">not</option>
7945 <option value="range">range</option>
7946 </param>
7947 <when value="equal">
7948 <param name="query_text" type="text" label="Searched term"/>
7949 </when>
7950 <when value="not">
7951 <param name="query_text" type="text" label="Searched term"/>
7952 <param name="not_query_text" type="text" label="Limiting term"/>
7953 </when>
7954 <when value="range">
7955 <param name="min" type="text" label="From"/>
7956 <param name="max" type="text" label="To"/>
7957 </when>
7958 </conditional>
7959 </repeat>
7960 </when>
7961
7962 <when value="emblnew_standard">
7963 <param name="fields" type="select" label="Fields to extract" multiple="true">
7964 <option value="AGRICOLA" selected="true">AGRICOLA</option>
7965 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
7966 <option value="CABRI" selected="true">CABRI</option>
7967 <option value="COMPARE-REFGENOME" selected="true">COMPARE-REFGENOME</option>
7968 <option value="DOI" selected="true">DOI</option>
7969 <option value="EC" selected="true">EC</option>
7970 <option value="EMBLCDS" selected="true">EMBLCDS</option>
7971 <option value="ENA" selected="true">ENA</option>
7972 <option value="ENA-CON" selected="true">ENA-CON</option>
7973 <option value="ENSEMBL-GN" selected="true">ENSEMBL-GN</option>
7974 <option value="ENSEMBLGENOMES-GN" selected="true">ENSEMBLGENOMES-GN</option>
7975 <option value="EPD" selected="true">EPD</option>
7976 <option value="EUROPEPMC" selected="true">EUROPEPMC</option>
7977 <option value="FLYBASE" selected="true">FLYBASE</option>
7978 <option value="GOA" selected="true">GOA</option>
7979 <option value="GRAINGENES" selected="true">GRAINGENES</option>
7980 <option value="H-INVDB" selected="true">H-INVDB</option>
7981 <option value="HGNC" selected="true">HGNC</option>
7982 <option value="INTERPRO" selected="true">INTERPRO</option>
7983 <option value="IPD-MHC" selected="true">IPD-MHC</option>
7984 <option value="MGI" selected="true">MGI</option>
7985 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
7986 <option value="PDB" selected="true">PDB</option>
7987 <option value="PUBMED" selected="true">PUBMED</option>
7988 <option value="RFAM" selected="true">RFAM</option>
7989 <option value="SGD" selected="true">SGD</option>
7990 <option value="SILVA-LSU" selected="true">SILVA-LSU</option>
7991 <option value="SILVA-SSU" selected="true">SILVA-SSU</option>
7992 <option value="STRAININFO" selected="true">STRAININFO</option>
7993 <option value="TAIR" selected="true">TAIR</option>
7994 <option value="TAXON" selected="true">TAXON</option>
7995 <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
7996 <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
7997 <option value="UNITE" selected="true">UNITE</option>
7998 <option value="ZFIN" selected="true">ZFIN</option>
7999 <option value="acc" selected="true">acc</option>
8000 <option value="description" selected="true">description</option>
8001 <option value="domain_source" selected="true">domain_source</option>
8002 <option value="id" selected="true">id</option>
8003 <validator type="no_options" message="Please select at least one field" />
8004 </param>
8005 <repeat name="queries" title="Add a query">
8006 <param name="combination_operation" type="select" label="Combination operation" >
8007 <option value="AND">AND</option>
8008 <option value="OR">OR</option>
8009 <option value="NOT">NOT</option>
8010 </param>
8011 <param name="query_field" type="select" label="Fields" >
8012 <option value="AGRICOLA">AGRICOLA</option>
8013 <option value="BIOSAMPLE">BIOSAMPLE</option>
8014 <option value="CABRI">CABRI</option>
8015 <option value="COMPARE-REFGENOME">COMPARE-REFGENOME</option>
8016 <option value="DOI">DOI</option>
8017 <option value="EC">EC</option>
8018 <option value="EMBLCDS">EMBLCDS</option>
8019 <option value="EMBLCDS_version">EMBLCDS_version</option>
8020 <option value="ENA">ENA</option>
8021 <option value="ENA-CON">ENA-CON</option>
8022 <option value="ENSEMBL-GN">ENSEMBL-GN</option>
8023 <option value="ENSEMBL-SCAFFOLDS">ENSEMBL-SCAFFOLDS</option>
8024 <option value="ENSEMBL-TR">ENSEMBL-TR</option>
8025 <option value="ENSEMBLGENOMES-GN">ENSEMBLGENOMES-GN</option>
8026 <option value="ENSEMBLGENOMES-TR">ENSEMBLGENOMES-TR</option>
8027 <option value="EPD">EPD</option>
8028 <option value="EUROPEPMC">EUROPEPMC</option>
8029 <option value="FLYBASE">FLYBASE</option>
8030 <option value="GOA">GOA</option>
8031 <option value="GRAINGENES">GRAINGENES</option>
8032 <option value="H-INVDB">H-INVDB</option>
8033 <option value="HGNC">HGNC</option>
8034 <option value="IMGT_HLA">IMGT_HLA</option>
8035 <option value="IMGT_LIGM">IMGT_LIGM</option>
8036 <option value="INTERPRO">INTERPRO</option>
8037 <option value="IPD-MHC">IPD-MHC</option>
8038 <option value="MD5">MD5</option>
8039 <option value="MGI">MGI</option>
8040 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
8041 <option value="PDB">PDB</option>
8042 <option value="PR2">PR2</option>
8043 <option value="PROJECT">PROJECT</option>
8044 <option value="PSEUDO">PSEUDO</option>
8045 <option value="PUBMED">PUBMED</option>
8046 <option value="RFAM">RFAM</option>
8047 <option value="SGD">SGD</option>
8048 <option value="SILVA-LSU">SILVA-LSU</option>
8049 <option value="SILVA-SSU">SILVA-SSU</option>
8050 <option value="STRAININFO">STRAININFO</option>
8051 <option value="TAIR">TAIR</option>
8052 <option value="TAXON">TAXON</option>
8053 <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
8054 <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
8055 <option value="UNITE">UNITE</option>
8056 <option value="ZFIN">ZFIN</option>
8057 <option value="acc">acc</option>
8058 <option value="bio_material">bio_material</option>
8059 <option value="creation_date">creation_date</option>
8060 <option value="culture_collection">culture_collection</option>
8061 <option value="data_class">data_class</option>
8062 <option value="description">description</option>
8063 <option value="division">division</option>
8064 <option value="domain_source">domain_source</option>
8065 <option value="gene">gene</option>
8066 <option value="gene_synonym">gene_synonym</option>
8067 <option value="id">id</option>
8068 <option value="keywords">keywords</option>
8069 <option value="last_modification_date">last_modification_date</option>
8070 <option value="length">length</option>
8071 <option value="locus_tag">locus_tag</option>
8072 <option value="molecule_type">molecule_type</option>
8073 <option value="old_locus_tag">old_locus_tag</option>
8074 <option value="organelle">organelle</option>
8075 <option value="organism">organism</option>
8076 <option value="organism_classification">organism_classification</option>
8077 <option value="organism_species">organism_species</option>
8078 <option value="product">product</option>
8079 <option value="references">references</option>
8080 <option value="sequence_version">sequence_version</option>
8081 <option value="specimen_voucher">specimen_voucher</option>
8082 <option value="topology">topology</option>
8083 </param>
8084 <conditional name="comp_operation">
8085 <param name="operation" type="select" label="Comparison operation" >
8086 <option value="equal">equal</option>
8087 <option value="not">not</option>
8088 <option value="range">range</option>
8089 </param>
8090 <when value="equal">
8091 <param name="query_text" type="text" label="Searched term"/>
8092 </when>
8093 <when value="not">
8094 <param name="query_text" type="text" label="Searched term"/>
8095 <param name="not_query_text" type="text" label="Limiting term"/>
8096 </when>
8097 <when value="range">
8098 <param name="min" type="text" label="From"/>
8099 <param name="max" type="text" label="To"/>
8100 </when>
8101 </conditional>
8102 </repeat>
8103 </when>
8104
8105 <when value="ebiweb_corporate">
8106 <param name="fields" type="select" label="Fields to extract" multiple="true">
8107 <option value="content" selected="true">content</option>
8108 <option value="content_signature" selected="true">content_signature</option>
8109 <option value="description" selected="true">description</option>
8110 <option value="domain_source" selected="true">domain_source</option>
8111 <option value="id" selected="true">id</option>
8112 <option value="mime_type" selected="true">mime_type</option>
8113 <option value="name" selected="true">name</option>
8114 <option value="namespace" selected="true">namespace</option>
8115 <validator type="no_options" message="Please select at least one field" />
8116 </param>
8117 <repeat name="queries" title="Add a query">
8118 <param name="combination_operation" type="select" label="Combination operation" >
8119 <option value="AND">AND</option>
8120 <option value="OR">OR</option>
8121 <option value="NOT">NOT</option>
8122 </param>
8123 <param name="query_field" type="select" label="Fields" >
8124 <option value="author">author</option>
8125 <option value="content">content</option>
8126 <option value="content_signature">content_signature</option>
8127 <option value="creation_date">creation_date</option>
8128 <option value="description">description</option>
8129 <option value="domain_source">domain_source</option>
8130 <option value="encoding">encoding</option>
8131 <option value="id">id</option>
8132 <option value="keywords">keywords</option>
8133 <option value="last_modification_date">last_modification_date</option>
8134 <option value="menu">menu</option>
8135 <option value="mime_type">mime_type</option>
8136 <option value="name">name</option>
8137 <option value="namespace">namespace</option>
8138 </param>
8139 <conditional name="comp_operation">
8140 <param name="operation" type="select" label="Comparison operation" >
8141 <option value="equal">equal</option>
8142 <option value="not">not</option>
8143 <option value="range">range</option>
8144 </param>
8145 <when value="equal">
8146 <param name="query_text" type="text" label="Searched term"/>
8147 </when>
8148 <when value="not">
8149 <param name="query_text" type="text" label="Searched term"/>
8150 <param name="not_query_text" type="text" label="Limiting term"/>
8151 </when>
8152 <when value="range">
8153 <param name="min" type="text" label="From"/>
8154 <param name="max" type="text" label="To"/>
8155 </when>
8156 </conditional>
8157 </repeat>
8158 </when>
8159
8160 <when value="project">
8161 <param name="fields" type="select" label="Fields to extract" multiple="true">
8162 <option value="PUBMED" selected="true">PUBMED</option>
8163 <option value="TAXON" selected="true">TAXON</option>
8164 <option value="description" selected="true">description</option>
8165 <option value="domain_source" selected="true">domain_source</option>
8166 <option value="id" selected="true">id</option>
8167 <option value="name" selected="true">name</option>
8168 <validator type="no_options" message="Please select at least one field" />
8169 </param>
8170 <repeat name="queries" title="Add a query">
8171 <param name="combination_operation" type="select" label="Combination operation" >
8172 <option value="AND">AND</option>
8173 <option value="OR">OR</option>
8174 <option value="NOT">NOT</option>
8175 </param>
8176 <param name="query_field" type="select" label="Fields" >
8177 <option value="PUBMED">PUBMED</option>
8178 <option value="TAXON">TAXON</option>
8179 <option value="acc">acc</option>
8180 <option value="description">description</option>
8181 <option value="domain_source">domain_source</option>
8182 <option value="id">id</option>
8183 <option value="long_description">long_description</option>
8184 <option value="name">name</option>
8185 <option value="scientific_name">scientific_name</option>
8186 <option value="strain">strain</option>
8187 </param>
8188 <conditional name="comp_operation">
8189 <param name="operation" type="select" label="Comparison operation" >
8190 <option value="equal">equal</option>
8191 <option value="not">not</option>
8192 <option value="range">range</option>
8193 </param>
8194 <when value="equal">
8195 <param name="query_text" type="text" label="Searched term"/>
8196 </when>
8197 <when value="not">
8198 <param name="query_text" type="text" label="Searched term"/>
8199 <param name="not_query_text" type="text" label="Limiting term"/>
8200 </when>
8201 <when value="range">
8202 <param name="min" type="text" label="From"/>
8203 <param name="max" type="text" label="To"/>
8204 </when>
8205 </conditional>
8206 </repeat>
8207 </when>
8208
8209 <when value="sra-study">
8210 <param name="fields" type="select" label="Fields to extract" multiple="true">
8211 <option value="PROJECT" selected="true">PROJECT</option>
8212 <option value="PUBMED" selected="true">PUBMED</option>
8213 <option value="SRA-STUDY" selected="true">SRA-STUDY</option>
8214 <option value="SRA-SUBMISSION" selected="true">SRA-SUBMISSION</option>
8215 <option value="description" selected="true">description</option>
8216 <option value="domain_source" selected="true">domain_source</option>
8217 <option value="existing_study_type" selected="true">existing_study_type</option>
8218 <option value="id" selected="true">id</option>
8219 <option value="new_study_type" selected="true">new_study_type</option>
8220 <validator type="no_options" message="Please select at least one field" />
8221 </param>
8222 <repeat name="queries" title="Add a query">
8223 <param name="combination_operation" type="select" label="Combination operation" >
8224 <option value="AND">AND</option>
8225 <option value="OR">OR</option>
8226 <option value="NOT">NOT</option>
8227 </param>
8228 <param name="query_field" type="select" label="Fields" >
8229 <option value="PROJECT">PROJECT</option>
8230 <option value="PUBMED">PUBMED</option>
8231 <option value="SRA-STUDY">SRA-STUDY</option>
8232 <option value="SRA-SUBMISSION">SRA-SUBMISSION</option>
8233 <option value="abstract">abstract</option>
8234 <option value="acc">acc</option>
8235 <option value="alias">alias</option>
8236 <option value="center_name">center_name</option>
8237 <option value="center_project_name">center_project_name</option>
8238 <option value="description">description</option>
8239 <option value="domain_source">domain_source</option>
8240 <option value="existing_study_type">existing_study_type</option>
8241 <option value="id">id</option>
8242 <option value="new_study_type">new_study_type</option>
8243 </param>
8244 <conditional name="comp_operation">
8245 <param name="operation" type="select" label="Comparison operation" >
8246 <option value="equal">equal</option>
8247 <option value="not">not</option>
8248 <option value="range">range</option>
8249 </param>
8250 <when value="equal">
8251 <param name="query_text" type="text" label="Searched term"/>
8252 </when>
8253 <when value="not">
8254 <param name="query_text" type="text" label="Searched term"/>
8255 <param name="not_query_text" type="text" label="Limiting term"/>
8256 </when>
8257 <when value="range">
8258 <param name="min" type="text" label="From"/>
8259 <param name="max" type="text" label="To"/>
8260 </when>
8261 </conditional>
8262 </repeat>
8263 </when>
8264
8265 <when value="sra-submission">
8266 <param name="fields" type="select" label="Fields to extract" multiple="true">
8267 <option value="description" selected="true">description</option>
8268 <option value="domain_source" selected="true">domain_source</option>
8269 <option value="id" selected="true">id</option>
8270 <validator type="no_options" message="Please select at least one field" />
8271 </param>
8272 <repeat name="queries" title="Add a query">
8273 <param name="combination_operation" type="select" label="Combination operation" >
8274 <option value="AND">AND</option>
8275 <option value="OR">OR</option>
8276 <option value="NOT">NOT</option>
8277 </param>
8278 <param name="query_field" type="select" label="Fields" >
8279 <option value="acc">acc</option>
8280 <option value="alias">alias</option>
8281 <option value="center_name">center_name</option>
8282 <option value="description">description</option>
8283 <option value="domain_source">domain_source</option>
8284 <option value="id">id</option>
8285 </param>
8286 <conditional name="comp_operation">
8287 <param name="operation" type="select" label="Comparison operation" >
8288 <option value="equal">equal</option>
8289 <option value="not">not</option>
8290 <option value="range">range</option>
8291 </param>
8292 <when value="equal">
8293 <param name="query_text" type="text" label="Searched term"/>
8294 </when>
8295 <when value="not">
8296 <param name="query_text" type="text" label="Searched term"/>
8297 <param name="not_query_text" type="text" label="Limiting term"/>
8298 </when>
8299 <when value="range">
8300 <param name="min" type="text" label="From"/>
8301 <param name="max" type="text" label="To"/>
8302 </when>
8303 </conditional>
8304 </repeat>
8305 </when>
8306
8307 <when value="taxonomy">
8308 <param name="fields" type="select" label="Fields to extract" multiple="true">
8309 <option value="TAXONOMY" selected="true">TAXONOMY</option>
8310 <option value="acronym" selected="true">acronym</option>
8311 <option value="anamorph" selected="true">anamorph</option>
8312 <option value="blast_name" selected="true">blast_name</option>
8313 <option value="common_name" selected="true">common_name</option>
8314 <option value="doc_file" selected="true">doc_file</option>
8315 <option value="domain_source" selected="true">domain_source</option>
8316 <option value="equivalent_name" selected="true">equivalent_name</option>
8317 <option value="genbank_acronym" selected="true">genbank_acronym</option>
8318 <option value="genbank_anamorph" selected="true">genbank_anamorph</option>
8319 <option value="genbank_common_name" selected="true">genbank_common_name</option>
8320 <option value="genbank_synonym" selected="true">genbank_synonym</option>
8321 <option value="id" selected="true">id</option>
8322 <option value="name" selected="true">name</option>
8323 <option value="offset_end" selected="true">offset_end</option>
8324 <option value="offset_start" selected="true">offset_start</option>
8325 <option value="synonym" selected="true">synonym</option>
8326 <validator type="no_options" message="Please select at least one field" />
8327 </param>
8328 <repeat name="queries" title="Add a query">
8329 <param name="combination_operation" type="select" label="Combination operation" >
8330 <option value="AND">AND</option>
8331 <option value="OR">OR</option>
8332 <option value="NOT">NOT</option>
8333 </param>
8334 <param name="query_field" type="select" label="Fields" >
8335 <option value="TAXONOMY">TAXONOMY</option>
8336 <option value="acronym">acronym</option>
8337 <option value="anamorph">anamorph</option>
8338 <option value="blast_name">blast_name</option>
8339 <option value="common_name">common_name</option>
8340 <option value="domain_source">domain_source</option>
8341 <option value="equivalent_name">equivalent_name</option>
8342 <option value="genbank_acronym">genbank_acronym</option>
8343 <option value="genbank_anamorph">genbank_anamorph</option>
8344 <option value="genbank_common_name">genbank_common_name</option>
8345 <option value="genbank_synonym">genbank_synonym</option>
8346 <option value="gene_code">gene_code</option>
8347 <option value="id">id</option>
8348 <option value="in_part">in_part</option>
8349 <option value="includes">includes</option>
8350 <option value="misnomer">misnomer</option>
8351 <option value="misspelling">misspelling</option>
8352 <option value="name">name</option>
8353 <option value="rank">rank</option>
8354 <option value="synonym">synonym</option>
8355 <option value="teleomorph">teleomorph</option>
8356 </param>
8357 <conditional name="comp_operation">
8358 <param name="operation" type="select" label="Comparison operation" >
8359 <option value="equal">equal</option>
8360 <option value="not">not</option>
8361 <option value="range">range</option>
8362 </param>
8363 <when value="equal">
8364 <param name="query_text" type="text" label="Searched term"/>
8365 </when>
8366 <when value="not">
8367 <param name="query_text" type="text" label="Searched term"/>
8368 <param name="not_query_text" type="text" label="Limiting term"/>
8369 </when>
8370 <when value="range">
8371 <param name="min" type="text" label="From"/>
8372 <param name="max" type="text" label="To"/>
8373 </when>
8374 </conditional>
8375 </repeat>
8376 </when>
8377
8378 <when value="tsa_masters">
8379 <param name="fields" type="select" label="Fields to extract" multiple="true">
8380 <option value="BIOSAMPLE" selected="true">BIOSAMPLE</option>
8381 <option value="PROJECT" selected="true">PROJECT</option>
8382 <option value="PUBMED" selected="true">PUBMED</option>
8383 <option value="SAMPLE" selected="true">SAMPLE</option>
8384 <option value="TAXON" selected="true">TAXON</option>
8385 <option value="acc" selected="true">acc</option>
8386 <option value="description" selected="true">description</option>
8387 <option value="domain_source" selected="true">domain_source</option>
8388 <option value="id" selected="true">id</option>
8389 <validator type="no_options" message="Please select at least one field" />
8390 </param>
8391 <repeat name="queries" title="Add a query">
8392 <param name="combination_operation" type="select" label="Combination operation" >
8393 <option value="AND">AND</option>
8394 <option value="OR">OR</option>
8395 <option value="NOT">NOT</option>
8396 </param>
8397 <param name="query_field" type="select" label="Fields" >
8398 <option value="BIOSAMPLE">BIOSAMPLE</option>
8399 <option value="PROJECT">PROJECT</option>
8400 <option value="PUBMED">PUBMED</option>
8401 <option value="SAMPLE">SAMPLE</option>
8402 <option value="TAXON">TAXON</option>
8403 <option value="acc">acc</option>
8404 <option value="bio_material">bio_material</option>
8405 <option value="common_name">common_name</option>
8406 <option value="creation_date">creation_date</option>
8407 <option value="culture_collection">culture_collection</option>
8408 <option value="description">description</option>
8409 <option value="division">division</option>
8410 <option value="domain_source">domain_source</option>
8411 <option value="host">host</option>
8412 <option value="id">id</option>
8413 <option value="isolate">isolate</option>
8414 <option value="isolation_source">isolation_source</option>
8415 <option value="keywords">keywords</option>
8416 <option value="last_modification_date">last_modification_date</option>
8417 <option value="molecule_type">molecule_type</option>
8418 <option value="prefix">prefix</option>
8419 <option value="scientific_name">scientific_name</option>
8420 <option value="specimen_voucher">specimen_voucher</option>
8421 <option value="strain">strain</option>
8422 </param>
8423 <conditional name="comp_operation">
8424 <param name="operation" type="select" label="Comparison operation" >
8425 <option value="equal">equal</option>
8426 <option value="not">not</option>
8427 <option value="range">range</option>
8428 </param>
8429 <when value="equal">
8430 <param name="query_text" type="text" label="Searched term"/>
8431 </when>
8432 <when value="not">
8433 <param name="query_text" type="text" label="Searched term"/>
8434 <param name="not_query_text" type="text" label="Limiting term"/>
8435 </when>
8436 <when value="range">
8437 <param name="min" type="text" label="From"/>
8438 <param name="max" type="text" label="To"/>
8439 </when>
8440 </conditional>
8441 </repeat>
8442 </when>
8443
8444 <when value="treefam">
8445 <param name="fields" type="select" label="Fields to extract" multiple="true">
8446 <option value="ENSEMBL" selected="true">ENSEMBL</option>
8447 <option value="HGNC" selected="true">HGNC</option>
8448 <option value="PFAM" selected="true">PFAM</option>
8449 <option value="TAXONOMY" selected="true">TAXONOMY</option>
8450 <option value="UNIPROT" selected="true">UNIPROT</option>
8451 <option value="WIKIGENE" selected="true">WIKIGENE</option>
8452 <option value="description" selected="true">description</option>
8453 <option value="domain_source" selected="true">domain_source</option>
8454 <option value="id" selected="true">id</option>
8455 <option value="name" selected="true">name</option>
8456 <validator type="no_options" message="Please select at least one field" />
8457 </param>
8458 <repeat name="queries" title="Add a query">
8459 <param name="combination_operation" type="select" label="Combination operation" >
8460 <option value="AND">AND</option>
8461 <option value="OR">OR</option>
8462 <option value="NOT">NOT</option>
8463 </param>
8464 <param name="query_field" type="select" label="Fields" >
8465 <option value="ENSEMBL">ENSEMBL</option>
8466 <option value="HGNC">HGNC</option>
8467 <option value="PFAM">PFAM</option>
8468 <option value="SCG">SCG</option>
8469 <option value="TAXONOMY">TAXONOMY</option>
8470 <option value="UNIPROT">UNIPROT</option>
8471 <option value="WIKIGENE">WIKIGENE</option>
8472 <option value="description">description</option>
8473 <option value="domain_source">domain_source</option>
8474 <option value="gene_symbol">gene_symbol</option>
8475 <option value="gene_synonym">gene_synonym</option>
8476 <option value="id">id</option>
8477 <option value="name">name</option>
8478 </param>
8479 <conditional name="comp_operation">
8480 <param name="operation" type="select" label="Comparison operation" >
8481 <option value="equal">equal</option>
8482 <option value="not">not</option>
8483 <option value="range">range</option>
8484 </param>
8485 <when value="equal">
8486 <param name="query_text" type="text" label="Searched term"/>
8487 </when>
8488 <when value="not">
8489 <param name="query_text" type="text" label="Searched term"/>
8490 <param name="not_query_text" type="text" label="Limiting term"/>
8491 </when>
8492 <when value="range">
8493 <param name="min" type="text" label="From"/>
8494 <param name="max" type="text" label="To"/>
8495 </when>
8496 </conditional>
8497 </repeat>
8498 </when>
8499
8500 <when value="uspto">
8501 <param name="fields" type="select" label="Fields to extract" multiple="true">
8502 <option value="PATENT_NUMBER" selected="true">PATENT_NUMBER</option>
8503 <option value="acc" selected="true">acc</option>
8504 <option value="description" selected="true">description</option>
8505 <option value="doc_file" selected="true">doc_file</option>
8506 <option value="domain_source" selected="true">domain_source</option>
8507 <option value="id" selected="true">id</option>
8508 <option value="offset_end" selected="true">offset_end</option>
8509 <option value="offset_start" selected="true">offset_start</option>
8510 <validator type="no_options" message="Please select at least one field" />
8511 </param>
8512 <repeat name="queries" title="Add a query">
8513 <param name="combination_operation" type="select" label="Combination operation" >
8514 <option value="AND">AND</option>
8515 <option value="OR">OR</option>
8516 <option value="NOT">NOT</option>
8517 </param>
8518 <param name="query_field" type="select" label="Fields" >
8519 <option value="PATENT_NUMBER">PATENT_NUMBER</option>
8520 <option value="acc">acc</option>
8521 <option value="creation_date">creation_date</option>
8522 <option value="data_class">data_class</option>
8523 <option value="description">description</option>
8524 <option value="domain_source">domain_source</option>
8525 <option value="id">id</option>
8526 <option value="length">length</option>
8527 <option value="md5">md5</option>
8528 <option value="organism">organism</option>
8529 <option value="organism_species">organism_species</option>
8530 <option value="references">references</option>
8531 <option value="sequence_version">sequence_version</option>
8532 </param>
8533 <conditional name="comp_operation">
8534 <param name="operation" type="select" label="Comparison operation" >
8535 <option value="equal">equal</option>
8536 <option value="not">not</option>
8537 <option value="range">range</option>
8538 </param>
8539 <when value="equal">
8540 <param name="query_text" type="text" label="Searched term"/>
8541 </when>
8542 <when value="not">
8543 <param name="query_text" type="text" label="Searched term"/>
8544 <param name="not_query_text" type="text" label="Limiting term"/>
8545 </when>
8546 <when value="range">
8547 <param name="min" type="text" label="From"/>
8548 <param name="max" type="text" label="To"/>
8549 </when>
8550 </conditional>
8551 </repeat>
8552 </when>
8553
8554 <when value="uniparc">
8555 <param name="fields" type="select" label="Fields to extract" multiple="true">
8556 <option value="EMBL" selected="true">EMBL</option>
8557 <option value="EMBLWGS" selected="true">EMBLWGS</option>
8558 <option value="EMBL_CON" selected="true">EMBL_CON</option>
8559 <option value="EMBL_TPA" selected="true">EMBL_TPA</option>
8560 <option value="EMBL_TSA" selected="true">EMBL_TSA</option>
8561 <option value="ENSEMBL" selected="true">ENSEMBL</option>
8562 <option value="ENSEMBLBACTERIA" selected="true">ENSEMBLBACTERIA</option>
8563 <option value="ENSEMBLFUNGI" selected="true">ENSEMBLFUNGI</option>
8564 <option value="ENSEMBLMETAZOA" selected="true">ENSEMBLMETAZOA</option>
8565 <option value="ENSEMBLPLANTS" selected="true">ENSEMBLPLANTS</option>
8566 <option value="ENSEMBLPROTISTS" selected="true">ENSEMBLPROTISTS</option>
8567 <option value="EPO" selected="true">EPO</option>
8568 <option value="FLYBASE" selected="true">FLYBASE</option>
8569 <option value="H-INVDB" selected="true">H-INVDB</option>
8570 <option value="JPO" selected="true">JPO</option>
8571 <option value="KIPO" selected="true">KIPO</option>
8572 <option value="NCBI" selected="true">NCBI</option>
8573 <option value="PATRIC" selected="true">PATRIC</option>
8574 <option value="PDB" selected="true">PDB</option>
8575 <option value="PRF" selected="true">PRF</option>
8576 <option value="REFSEQ" selected="true">REFSEQ</option>
8577 <option value="SEED" selected="true">SEED</option>
8578 <option value="SGD" selected="true">SGD</option>
8579 <option value="TAIR" selected="true">TAIR</option>
8580 <option value="TAXONOMY" selected="true">TAXONOMY</option>
8581 <option value="TROME" selected="true">TROME</option>
8582 <option value="UNIPROT" selected="true">UNIPROT</option>
8583 <option value="UNIPROTKB_SWISS-PROT" selected="true">UNIPROTKB_SWISS-PROT</option>
8584 <option value="UNIPROTKB_SWISS-PROT_PROTEIN_ISOFORMS" selected="true">UNIPROTKB_SWISS-PROT_PROTEIN_ISOFORMS</option>
8585 <option value="UNIPROTKB_TREMBL" selected="true">UNIPROTKB_TREMBL</option>
8586 <option value="USPTO" selected="true">USPTO</option>
8587 <option value="VECTORBASE" selected="true">VECTORBASE</option>
8588 <option value="VEGA" selected="true">VEGA</option>
8589 <option value="WBPARASITE" selected="true">WBPARASITE</option>
8590 <option value="WORMBASE" selected="true">WORMBASE</option>
8591 <option value="domain_source" selected="true">domain_source</option>
8592 <option value="gene_name" selected="true">gene_name</option>
8593 <option value="id" selected="true">id</option>
8594 <option value="length" selected="true">length</option>
8595 <validator type="no_options" message="Please select at least one field" />
8596 </param>
8597 <repeat name="queries" title="Add a query">
8598 <param name="combination_operation" type="select" label="Combination operation" >
8599 <option value="AND">AND</option>
8600 <option value="OR">OR</option>
8601 <option value="NOT">NOT</option>
8602 </param>
8603 <param name="query_field" type="select" label="Fields" >
8604 <option value="EMBL">EMBL</option>
8605 <option value="EMBLWGS">EMBLWGS</option>
8606 <option value="EMBL_CON">EMBL_CON</option>
8607 <option value="EMBL_TPA">EMBL_TPA</option>
8608 <option value="EMBL_TSA">EMBL_TSA</option>
8609 <option value="ENSEMBL">ENSEMBL</option>
8610 <option value="ENSEMBLBACTERIA">ENSEMBLBACTERIA</option>
8611 <option value="ENSEMBLFUNGI">ENSEMBLFUNGI</option>
8612 <option value="ENSEMBLMETAZOA">ENSEMBLMETAZOA</option>
8613 <option value="ENSEMBLPLANTS">ENSEMBLPLANTS</option>
8614 <option value="ENSEMBLPROTISTS">ENSEMBLPROTISTS</option>
8615 <option value="EPO">EPO</option>
8616 <option value="FLYBASE">FLYBASE</option>
8617 <option value="H-INVDB">H-INVDB</option>
8618 <option value="JPO">JPO</option>
8619 <option value="KIPO">KIPO</option>
8620 <option value="NCBI">NCBI</option>
8621 <option value="PATRIC">PATRIC</option>
8622 <option value="PDB">PDB</option>
8623 <option value="PRF">PRF</option>
8624 <option value="REFSEQ">REFSEQ</option>
8625 <option value="SEED">SEED</option>
8626 <option value="SGD">SGD</option>
8627 <option value="TAIR">TAIR</option>
8628 <option value="TAXONOMY">TAXONOMY</option>
8629 <option value="TROME">TROME</option>
8630 <option value="UNIPROT">UNIPROT</option>
8631 <option value="UNIPROTKB_SWISS-PROT">UNIPROTKB_SWISS-PROT</option>
8632 <option value="UNIPROTKB_SWISS-PROT_PROTEIN_ISOFORMS">UNIPROTKB_SWISS-PROT_PROTEIN_ISOFORMS</option>
8633 <option value="UNIPROTKB_TREMBL">UNIPROTKB_TREMBL</option>
8634 <option value="USPTO">USPTO</option>
8635 <option value="VECTORBASE">VECTORBASE</option>
8636 <option value="VEGA">VEGA</option>
8637 <option value="WBPARASITE">WBPARASITE</option>
8638 <option value="WORMBASE">WORMBASE</option>
8639 <option value="crc64_iso">crc64_iso</option>
8640 <option value="domain_source">domain_source</option>
8641 <option value="gene_name">gene_name</option>
8642 <option value="id">id</option>
8643 <option value="length">length</option>
8644 <option value="md5">md5</option>
8645 <option value="pdb_chain">pdb_chain</option>
8646 <option value="uniprotkb_exclusion">uniprotkb_exclusion</option>
8647 </param>
8648 <conditional name="comp_operation">
8649 <param name="operation" type="select" label="Comparison operation" >
8650 <option value="equal">equal</option>
8651 <option value="not">not</option>
8652 <option value="range">range</option>
8653 </param>
8654 <when value="equal">
8655 <param name="query_text" type="text" label="Searched term"/>
8656 </when>
8657 <when value="not">
8658 <param name="query_text" type="text" label="Searched term"/>
8659 <param name="not_query_text" type="text" label="Limiting term"/>
8660 </when>
8661 <when value="range">
8662 <param name="min" type="text" label="From"/>
8663 <param name="max" type="text" label="To"/>
8664 </when>
8665 </conditional>
8666 </repeat>
8667 </when>
8668
8669 <when value="uniprot">
8670 <param name="fields" type="select" label="Fields to extract" multiple="true">
8671 <option value="AGRICOLA" selected="true">AGRICOLA</option>
8672 <option value="ALLERGOME" selected="true">ALLERGOME</option>
8673 <option value="ARACHNOSERVER" selected="true">ARACHNOSERVER</option>
8674 <option value="BGEE" selected="true">BGEE</option>
8675 <option value="BINDINGDB" selected="true">BINDINGDB</option>
8676 <option value="BIOCYC" selected="true">BIOCYC</option>
8677 <option value="BIOGRID" selected="true">BIOGRID</option>
8678 <option value="BIOMUTA" selected="true">BIOMUTA</option>
8679 <option value="BRENDA" selected="true">BRENDA</option>
8680 <option value="CAZY" selected="true">CAZY</option>
8681 <option value="CCDS" selected="true">CCDS</option>
8682 <option value="CDD" selected="true">CDD</option>
8683 <option value="CGD" selected="true">CGD</option>
8684 <option value="CHEBI" selected="true">CHEBI</option>
8685 <option value="CHEMBL" selected="true">CHEMBL</option>
8686 <option value="CHITARS" selected="true">CHITARS</option>
8687 <option value="CLEANEX" selected="true">CLEANEX</option>
8688 <option value="CODING" selected="true">CODING</option>
8689 <option value="COLLECTF" selected="true">COLLECTF</option>
8690 <option value="COMPLUYEAST-2DPAGE" selected="true">COMPLUYEAST-2DPAGE</option>
8691 <option value="CONOSERVER" selected="true">CONOSERVER</option>
8692 <option value="CTD" selected="true">CTD</option>
8693 <option value="DEPOD" selected="true">DEPOD</option>
8694 <option value="DI" selected="true">DI</option>
8695 <option value="DICTYBASE" selected="true">DICTYBASE</option>
8696 <option value="DIP" selected="true">DIP</option>
8697 <option value="DISGENET" selected="true">DISGENET</option>
8698 <option value="DISPROT" selected="true">DISPROT</option>
8699 <option value="DMDM" selected="true">DMDM</option>
8700 <option value="DNASU" selected="true">DNASU</option>
8701 <option value="DOI" selected="true">DOI</option>
8702 <option value="DOSAC-COBS-2DPAGE" selected="true">DOSAC-COBS-2DPAGE</option>
8703 <option value="DRUGBANK" selected="true">DRUGBANK</option>
8704 <option value="EC" selected="true">EC</option>
8705 <option value="ECHOBASE" selected="true">ECHOBASE</option>
8706 <option value="ECNUMBER" selected="true">ECNUMBER</option>
8707 <option value="ECOGENE" selected="true">ECOGENE</option>
8708 <option value="EGGNOG" selected="true">EGGNOG</option>
8709 <option value="EMBL" selected="true">EMBL</option>
8710 <option value="ENSEMBL" selected="true">ENSEMBL</option>
8711 <option value="ENSEMBLBACTERIA" selected="true">ENSEMBLBACTERIA</option>
8712 <option value="ENSEMBLFUNGI" selected="true">ENSEMBLFUNGI</option>
8713 <option value="ENSEMBLMETAZOA" selected="true">ENSEMBLMETAZOA</option>
8714 <option value="ENSEMBLPLANTS" selected="true">ENSEMBLPLANTS</option>
8715 <option value="ENSEMBLPROTISTS" selected="true">ENSEMBLPROTISTS</option>
8716 <option value="ENSEMBL_GENE" selected="true">ENSEMBL_GENE</option>
8717 <option value="EPD" selected="true">EPD</option>
8718 <option value="ESTHER" selected="true">ESTHER</option>
8719 <option value="EUHCVDB" selected="true">EUHCVDB</option>
8720 <option value="EUPATHDB" selected="true">EUPATHDB</option>
8721 <option value="EVOLUTIONARYTRACE" selected="true">EVOLUTIONARYTRACE</option>
8722 <option value="EXPRESSIONATLAS" selected="true">EXPRESSIONATLAS</option>
8723 <option value="FLYBASE" selected="true">FLYBASE</option>
8724 <option value="GENE3D" selected="true">GENE3D</option>
8725 <option value="GENECARDS" selected="true">GENECARDS</option>
8726 <option value="GENEDB" selected="true">GENEDB</option>
8727 <option value="GENEID" selected="true">GENEID</option>
8728 <option value="GENEREVIEWS" selected="true">GENEREVIEWS</option>
8729 <option value="GENEVISIBLE" selected="true">GENEVISIBLE</option>
8730 <option value="GENEWIKI" selected="true">GENEWIKI</option>
8731 <option value="GENOMERNAI" selected="true">GENOMERNAI</option>
8732 <option value="GO" selected="true">GO</option>
8733 <option value="GRAMENE" selected="true">GRAMENE</option>
8734 <option value="GUIDETOPHARMACOLOGY" selected="true">GUIDETOPHARMACOLOGY</option>
8735 <option value="H-INVDB" selected="true">H-INVDB</option>
8736 <option value="HAMAP" selected="true">HAMAP</option>
8737 <option value="HAMAP-RULE" selected="true">HAMAP-RULE</option>
8738 <option value="HGNC" selected="true">HGNC</option>
8739 <option value="HOGENOM" selected="true">HOGENOM</option>
8740 <option value="HOVERGEN" selected="true">HOVERGEN</option>
8741 <option value="HPA" selected="true">HPA</option>
8742 <option value="INPARANOID" selected="true">INPARANOID</option>
8743 <option value="INTACT" selected="true">INTACT</option>
8744 <option value="INTERPRO" selected="true">INTERPRO</option>
8745 <option value="IPTMNET" selected="true">IPTMNET</option>
8746 <option value="KEGG" selected="true">KEGG</option>
8747 <option value="KO" selected="true">KO</option>
8748 <option value="LEGIOLIST" selected="true">LEGIOLIST</option>
8749 <option value="LEPROMA" selected="true">LEPROMA</option>
8750 <option value="MAIZEGDB" selected="true">MAIZEGDB</option>
8751 <option value="MALACARDS" selected="true">MALACARDS</option>
8752 <option value="MAXQB" selected="true">MAXQB</option>
8753 <option value="MEROPS" selected="true">MEROPS</option>
8754 <option value="MGI" selected="true">MGI</option>
8755 <option value="MIM" selected="true">MIM</option>
8756 <option value="MINT" selected="true">MINT</option>
8757 <option value="MOONPROT" selected="true">MOONPROT</option>
8758 <option value="MYCOCLAP" selected="true">MYCOCLAP</option>
8759 <option value="NCBI_TAXID_OH" selected="true">NCBI_TAXID_OH</option>
8760 <option value="NCBI_TAXID_OX" selected="true">NCBI_TAXID_OX</option>
8761 <option value="NEXTPROT" selected="true">NEXTPROT</option>
8762 <option value="OGP" selected="true">OGP</option>
8763 <option value="OMA" selected="true">OMA</option>
8764 <option value="ONLINE_INFORMATION" selected="true">ONLINE_INFORMATION</option>
8765 <option value="OPENTARGETS" selected="true">OPENTARGETS</option>
8766 <option value="ORPHANET" selected="true">ORPHANET</option>
8767 <option value="ORTHODB" selected="true">ORTHODB</option>
8768 <option value="PANTHER" selected="true">PANTHER</option>
8769 <option value="PATRIC" selected="true">PATRIC</option>
8770 <option value="PAXDB" selected="true">PAXDB</option>
8771 <option value="PDB" selected="true">PDB</option>
8772 <option value="PDBSUM" selected="true">PDBSUM</option>
8773 <option value="PEPTIDEATLAS" selected="true">PEPTIDEATLAS</option>
8774 <option value="PEROXIBASE" selected="true">PEROXIBASE</option>
8775 <option value="PFAM" selected="true">PFAM</option>
8776 <option value="PHARMGKB" selected="true">PHARMGKB</option>
8777 <option value="PHOSPHOSITEPLUS" selected="true">PHOSPHOSITEPLUS</option>
8778 <option value="PHYLOMEDB" selected="true">PHYLOMEDB</option>
8779 <option value="PIR" selected="true">PIR</option>
8780 <option value="PIRNR" selected="true">PIRNR</option>
8781 <option value="PIRSF" selected="true">PIRSF</option>
8782 <option value="PIRSR" selected="true">PIRSR</option>
8783 <option value="PMAP-CUTDB" selected="true">PMAP-CUTDB</option>
8784 <option value="POMBASE" selected="true">POMBASE</option>
8785 <option value="PRIDE" selected="true">PRIDE</option>
8786 <option value="PRINTS" selected="true">PRINTS</option>
8787 <option value="PRO" selected="true">PRO</option>
8788 <option value="PRODOM" selected="true">PRODOM</option>
8789 <option value="PROMEX" selected="true">PROMEX</option>
8790 <option value="PROSITE" selected="true">PROSITE</option>
8791 <option value="PROSITE-PRORULE" selected="true">PROSITE-PRORULE</option>
8792 <option value="PROTEINMODELPORTAL" selected="true">PROTEINMODELPORTAL</option>
8793 <option value="PROTEOMES" selected="true">PROTEOMES</option>
8794 <option value="PSEUDOCAP" selected="true">PSEUDOCAP</option>
8795 <option value="PUBMED" selected="true">PUBMED</option>
8796 <option value="REACTOME" selected="true">REACTOME</option>
8797 <option value="REBASE" selected="true">REBASE</option>
8798 <option value="REFSEQ" selected="true">REFSEQ</option>
8799 <option value="REPRODUCTION-2DPAGE" selected="true">REPRODUCTION-2DPAGE</option>
8800 <option value="RGD" selected="true">RGD</option>
8801 <option value="SABIO-RK" selected="true">SABIO-RK</option>
8802 <option value="SGD" selected="true">SGD</option>
8803 <option value="SIGNALINK" selected="true">SIGNALINK</option>
8804 <option value="SIGNOR" selected="true">SIGNOR</option>
8805 <option value="SMART" selected="true">SMART</option>
8806 <option value="SMR" selected="true">SMR</option>
8807 <option value="STRING" selected="true">STRING</option>
8808 <option value="SUPFAM" selected="true">SUPFAM</option>
8809 <option value="SWISS-2DPAGE" selected="true">SWISS-2DPAGE</option>
8810 <option value="SWISSLIPIDS" selected="true">SWISSLIPIDS</option>
8811 <option value="SWISSPALM" selected="true">SWISSPALM</option>
8812 <option value="TAIR" selected="true">TAIR</option>
8813 <option value="TCDB" selected="true">TCDB</option>
8814 <option value="TIGRFAMS" selected="true">TIGRFAMS</option>
8815 <option value="TOPDOWNPROTEOMICS" selected="true">TOPDOWNPROTEOMICS</option>
8816 <option value="TREEFAM" selected="true">TREEFAM</option>
8817 <option value="TUBERCULIST" selected="true">TUBERCULIST</option>
8818 <option value="UCD-2DPAGE" selected="true">UCD-2DPAGE</option>
8819 <option value="UCSC" selected="true">UCSC</option>
8820 <option value="UNICARBKB" selected="true">UNICARBKB</option>
8821 <option value="UNIGENE" selected="true">UNIGENE</option>
8822 <option value="UNIPATHWAY" selected="true">UNIPATHWAY</option>
8823 <option value="UNIPROTKB" selected="true">UNIPROTKB</option>
8824 <option value="VECTORBASE" selected="true">VECTORBASE</option>
8825 <option value="WBPARASITE" selected="true">WBPARASITE</option>
8826 <option value="WORLD-2DPAGE" selected="true">WORLD-2DPAGE</option>
8827 <option value="WORMBASE" selected="true">WORMBASE</option>
8828 <option value="XENBASE" selected="true">XENBASE</option>
8829 <option value="ZFIN" selected="true">ZFIN</option>
8830 <option value="acc" selected="true">acc</option>
8831 <option value="descAltName" selected="true">descAltName</option>
8832 <option value="descRecName" selected="true">descRecName</option>
8833 <option value="descSubName" selected="true">descSubName</option>
8834 <option value="domain_source" selected="true">domain_source</option>
8835 <option value="gene_primary_name" selected="true">gene_primary_name</option>
8836 <option value="id" selected="true">id</option>
8837 <option value="length" selected="true">length</option>
8838 <option value="organism_scientific_name" selected="true">organism_scientific_name</option>
8839 <option value="status" selected="true">status</option>
8840 <validator type="no_options" message="Please select at least one field" />
8841 </param>
8842 <repeat name="queries" title="Add a query">
8843 <param name="combination_operation" type="select" label="Combination operation" >
8844 <option value="AND">AND</option>
8845 <option value="OR">OR</option>
8846 <option value="NOT">NOT</option>
8847 </param>
8848 <param name="query_field" type="select" label="Fields" >
8849 <option value="AGRICOLA">AGRICOLA</option>
8850 <option value="ALLERGOME">ALLERGOME</option>
8851 <option value="ARACHNOSERVER">ARACHNOSERVER</option>
8852 <option value="BGEE">BGEE</option>
8853 <option value="BINDINGDB">BINDINGDB</option>
8854 <option value="BIOCYC">BIOCYC</option>
8855 <option value="BIOGRID">BIOGRID</option>
8856 <option value="BIOMUTA">BIOMUTA</option>
8857 <option value="BRENDA">BRENDA</option>
8858 <option value="CAZY">CAZY</option>
8859 <option value="CCDS">CCDS</option>
8860 <option value="CDD">CDD</option>
8861 <option value="CGD">CGD</option>
8862 <option value="CHEBI">CHEBI</option>
8863 <option value="CHEMBL">CHEMBL</option>
8864 <option value="CHITARS">CHITARS</option>
8865 <option value="CLEANEX">CLEANEX</option>
8866 <option value="CODING">CODING</option>
8867 <option value="COLLECTF">COLLECTF</option>
8868 <option value="COMPLUYEAST-2DPAGE">COMPLUYEAST-2DPAGE</option>
8869 <option value="CONOSERVER">CONOSERVER</option>
8870 <option value="CTD">CTD</option>
8871 <option value="DEPOD">DEPOD</option>
8872 <option value="DI">DI</option>
8873 <option value="DICTYBASE">DICTYBASE</option>
8874 <option value="DIP">DIP</option>
8875 <option value="DISGENET">DISGENET</option>
8876 <option value="DISPROT">DISPROT</option>
8877 <option value="DMDM">DMDM</option>
8878 <option value="DNASU">DNASU</option>
8879 <option value="DOI">DOI</option>
8880 <option value="DOSAC-COBS-2DPAGE">DOSAC-COBS-2DPAGE</option>
8881 <option value="DRUGBANK">DRUGBANK</option>
8882 <option value="EC">EC</option>
8883 <option value="ECHOBASE">ECHOBASE</option>
8884 <option value="ECNUMBER">ECNUMBER</option>
8885 <option value="ECOGENE">ECOGENE</option>
8886 <option value="EGGNOG">EGGNOG</option>
8887 <option value="EMBL">EMBL</option>
8888 <option value="ENSEMBL">ENSEMBL</option>
8889 <option value="ENSEMBLBACTERIA">ENSEMBLBACTERIA</option>
8890 <option value="ENSEMBLFUNGI">ENSEMBLFUNGI</option>
8891 <option value="ENSEMBLMETAZOA">ENSEMBLMETAZOA</option>
8892 <option value="ENSEMBLPLANTS">ENSEMBLPLANTS</option>
8893 <option value="ENSEMBLPROTISTS">ENSEMBLPROTISTS</option>
8894 <option value="ENSEMBL_GENE">ENSEMBL_GENE</option>
8895 <option value="ENSEMBL_PROTEIN">ENSEMBL_PROTEIN</option>
8896 <option value="ENSEMBL_TRANSCRIPT">ENSEMBL_TRANSCRIPT</option>
8897 <option value="EPD">EPD</option>
8898 <option value="ESTHER">ESTHER</option>
8899 <option value="EUHCVDB">EUHCVDB</option>
8900 <option value="EUPATHDB">EUPATHDB</option>
8901 <option value="EVOLUTIONARYTRACE">EVOLUTIONARYTRACE</option>
8902 <option value="EXPRESSIONATLAS">EXPRESSIONATLAS</option>
8903 <option value="FLYBASE">FLYBASE</option>
8904 <option value="GENE3D">GENE3D</option>
8905 <option value="GENECARDS">GENECARDS</option>
8906 <option value="GENEDB">GENEDB</option>
8907 <option value="GENEID">GENEID</option>
8908 <option value="GENEREVIEWS">GENEREVIEWS</option>
8909 <option value="GENETREE">GENETREE</option>
8910 <option value="GENEVISIBLE">GENEVISIBLE</option>
8911 <option value="GENEWIKI">GENEWIKI</option>
8912 <option value="GENOMERNAI">GENOMERNAI</option>
8913 <option value="GO">GO</option>
8914 <option value="GRAMENE">GRAMENE</option>
8915 <option value="GUIDETOPHARMACOLOGY">GUIDETOPHARMACOLOGY</option>
8916 <option value="H-INVDB">H-INVDB</option>
8917 <option value="HAMAP">HAMAP</option>
8918 <option value="HAMAP-RULE">HAMAP-RULE</option>
8919 <option value="HGNC">HGNC</option>
8920 <option value="HOGENOM">HOGENOM</option>
8921 <option value="HOVERGEN">HOVERGEN</option>
8922 <option value="HPA">HPA</option>
8923 <option value="INPARANOID">INPARANOID</option>
8924 <option value="INTACT">INTACT</option>
8925 <option value="INTERPRO">INTERPRO</option>
8926 <option value="IPTMNET">IPTMNET</option>
8927 <option value="KEGG">KEGG</option>
8928 <option value="KO">KO</option>
8929 <option value="LEGIOLIST">LEGIOLIST</option>
8930 <option value="LEPROMA">LEPROMA</option>
8931 <option value="MAIZEGDB">MAIZEGDB</option>
8932 <option value="MALACARDS">MALACARDS</option>
8933 <option value="MAXQB">MAXQB</option>
8934 <option value="MEROPS">MEROPS</option>
8935 <option value="MGI">MGI</option>
8936 <option value="MIM">MIM</option>
8937 <option value="MINT">MINT</option>
8938 <option value="MOONPROT">MOONPROT</option>
8939 <option value="MYCOCLAP">MYCOCLAP</option>
8940 <option value="NCBI_TAXID_OH">NCBI_TAXID_OH</option>
8941 <option value="NCBI_TAXID_OX">NCBI_TAXID_OX</option>
8942 <option value="NEXTPROT">NEXTPROT</option>
8943 <option value="OGP">OGP</option>
8944 <option value="OMA">OMA</option>
8945 <option value="ONLINE_INFORMATION">ONLINE_INFORMATION</option>
8946 <option value="OPENTARGETS">OPENTARGETS</option>
8947 <option value="ORPHANET">ORPHANET</option>
8948 <option value="ORTHODB">ORTHODB</option>
8949 <option value="PANTHER">PANTHER</option>
8950 <option value="PATRIC">PATRIC</option>
8951 <option value="PAXDB">PAXDB</option>
8952 <option value="PDB">PDB</option>
8953 <option value="PDBSUM">PDBSUM</option>
8954 <option value="PEPTIDEATLAS">PEPTIDEATLAS</option>
8955 <option value="PEROXIBASE">PEROXIBASE</option>
8956 <option value="PFAM">PFAM</option>
8957 <option value="PHARMGKB">PHARMGKB</option>
8958 <option value="PHOSPHOSITEPLUS">PHOSPHOSITEPLUS</option>
8959 <option value="PHYLOMEDB">PHYLOMEDB</option>
8960 <option value="PIR">PIR</option>
8961 <option value="PIRNR">PIRNR</option>
8962 <option value="PIRSF">PIRSF</option>
8963 <option value="PIRSR">PIRSR</option>
8964 <option value="PMAP-CUTDB">PMAP-CUTDB</option>
8965 <option value="POMBASE">POMBASE</option>
8966 <option value="PRIDE">PRIDE</option>
8967 <option value="PRINTS">PRINTS</option>
8968 <option value="PRO">PRO</option>
8969 <option value="PRODOM">PRODOM</option>
8970 <option value="PROMEX">PROMEX</option>
8971 <option value="PROSITE">PROSITE</option>
8972 <option value="PROSITE-PRORULE">PROSITE-PRORULE</option>
8973 <option value="PROTEINMODELPORTAL">PROTEINMODELPORTAL</option>
8974 <option value="PROTEOMES">PROTEOMES</option>
8975 <option value="PSEUDOCAP">PSEUDOCAP</option>
8976 <option value="PUBMED">PUBMED</option>
8977 <option value="REACTOME">REACTOME</option>
8978 <option value="REBASE">REBASE</option>
8979 <option value="REFSEQ">REFSEQ</option>
8980 <option value="REPRODUCTION-2DPAGE">REPRODUCTION-2DPAGE</option>
8981 <option value="RGD">RGD</option>
8982 <option value="RULEBASE">RULEBASE</option>
8983 <option value="SAAS">SAAS</option>
8984 <option value="SABIO-RK">SABIO-RK</option>
8985 <option value="SAM">SAM</option>
8986 <option value="SGD">SGD</option>
8987 <option value="SIGNALINK">SIGNALINK</option>
8988 <option value="SIGNOR">SIGNOR</option>
8989 <option value="SMART">SMART</option>
8990 <option value="SMR">SMR</option>
8991 <option value="STRING">STRING</option>
8992 <option value="SUPFAM">SUPFAM</option>
8993 <option value="SWISS-2DPAGE">SWISS-2DPAGE</option>
8994 <option value="SWISSLIPIDS">SWISSLIPIDS</option>
8995 <option value="SWISSPALM">SWISSPALM</option>
8996 <option value="TAIR">TAIR</option>
8997 <option value="TCDB">TCDB</option>
8998 <option value="TIGRFAMS">TIGRFAMS</option>
8999 <option value="TOPDOWNPROTEOMICS">TOPDOWNPROTEOMICS</option>
9000 <option value="TREEFAM">TREEFAM</option>
9001 <option value="TUBERCULIST">TUBERCULIST</option>
9002 <option value="UCD-2DPAGE">UCD-2DPAGE</option>
9003 <option value="UCSC">UCSC</option>
9004 <option value="UNICARBKB">UNICARBKB</option>
9005 <option value="UNIGENE">UNIGENE</option>
9006 <option value="UNIPATHWAY">UNIPATHWAY</option>
9007 <option value="UNIPROTKB">UNIPROTKB</option>
9008 <option value="VECTORBASE">VECTORBASE</option>
9009 <option value="WBPARASITE">WBPARASITE</option>
9010 <option value="WORLD-2DPAGE">WORLD-2DPAGE</option>
9011 <option value="WORMBASE">WORMBASE</option>
9012 <option value="XENBASE">XENBASE</option>
9013 <option value="ZFIN">ZFIN</option>
9014 <option value="acc">acc</option>
9015 <option value="chromosome">chromosome</option>
9016 <option value="crc64_iso">crc64_iso</option>
9017 <option value="creation_date">creation_date</option>
9018 <option value="descRecName">descRecName</option>
9019 <option value="description">description</option>
9020 <option value="disease_name">disease_name</option>
9021 <option value="domain_source">domain_source</option>
9022 <option value="gene_ORF_name">gene_ORF_name</option>
9023 <option value="gene_ordered_locus_name">gene_ordered_locus_name</option>
9024 <option value="gene_primary_name">gene_primary_name</option>
9025 <option value="gene_synonym_name">gene_synonym_name</option>
9026 <option value="id">id</option>
9027 <option value="keyword_id">keyword_id</option>
9028 <option value="keywords">keywords</option>
9029 <option value="last_modification_date">last_modification_date</option>
9030 <option value="length">length</option>
9031 <option value="md5">md5</option>
9032 <option value="organelle">organelle</option>
9033 <option value="organism_classification">organism_classification</option>
9034 <option value="organism_host_species">organism_host_species</option>
9035 <option value="organism_scientific_name">organism_scientific_name</option>
9036 <option value="organism_species">organism_species</option>
9037 <option value="protein_existence">protein_existence</option>
9038 <option value="references">references</option>
9039 <option value="sequence_fragment">sequence_fragment</option>
9040 <option value="sequence_last_modif_date">sequence_last_modif_date</option>
9041 <option value="status">status</option>
9042 </param>
9043 <conditional name="comp_operation">
9044 <param name="operation" type="select" label="Comparison operation" >
9045 <option value="equal">equal</option>
9046 <option value="not">not</option>
9047 <option value="range">range</option>
9048 </param>
9049 <when value="equal">
9050 <param name="query_text" type="text" label="Searched term"/>
9051 </when>
9052 <when value="not">
9053 <param name="query_text" type="text" label="Searched term"/>
9054 <param name="not_query_text" type="text" label="Limiting term"/>
9055 </when>
9056 <when value="range">
9057 <param name="min" type="text" label="From"/>
9058 <param name="max" type="text" label="To"/>
9059 </when>
9060 </conditional>
9061 </repeat>
9062 </when>
9063
9064 <when value="uniref100">
9065 <param name="fields" type="select" label="Fields to extract" multiple="true">
9066 <option value="TAXONOMY" selected="true">TAXONOMY</option>
9067 <option value="UNIPARC" selected="true">UNIPARC</option>
9068 <option value="UNIPROT" selected="true">UNIPROT</option>
9069 <option value="UNIREF50" selected="true">UNIREF50</option>
9070 <option value="UNIREF90" selected="true">UNIREF90</option>
9071 <option value="domain_source" selected="true">domain_source</option>
9072 <option value="id" selected="true">id</option>
9073 <option value="length" selected="true">length</option>
9074 <option value="name" selected="true">name</option>
9075 <validator type="no_options" message="Please select at least one field" />
9076 </param>
9077 <repeat name="queries" title="Add a query">
9078 <param name="combination_operation" type="select" label="Combination operation" >
9079 <option value="AND">AND</option>
9080 <option value="OR">OR</option>
9081 <option value="NOT">NOT</option>
9082 </param>
9083 <param name="query_field" type="select" label="Fields" >
9084 <option value="TAXONOMY">TAXONOMY</option>
9085 <option value="UNIPARC">UNIPARC</option>
9086 <option value="UNIPROT">UNIPROT</option>
9087 <option value="UNIREF50">UNIREF50</option>
9088 <option value="UNIREF90">UNIREF90</option>
9089 <option value="crc64_iso">crc64_iso</option>
9090 <option value="dbref_protein_name">dbref_protein_name</option>
9091 <option value="dbref_source_organism">dbref_source_organism</option>
9092 <option value="dbref_uniprotkb_id">dbref_uniprotkb_id</option>
9093 <option value="domain_source">domain_source</option>
9094 <option value="entry_common_taxon">entry_common_taxon</option>
9095 <option value="entry_common_taxon_id">entry_common_taxon_id</option>
9096 <option value="id">id</option>
9097 <option value="last_modification_date">last_modification_date</option>
9098 <option value="length">length</option>
9099 <option value="md5">md5</option>
9100 <option value="name">name</option>
9101 </param>
9102 <conditional name="comp_operation">
9103 <param name="operation" type="select" label="Comparison operation" >
9104 <option value="equal">equal</option>
9105 <option value="not">not</option>
9106 <option value="range">range</option>
9107 </param>
9108 <when value="equal">
9109 <param name="query_text" type="text" label="Searched term"/>
9110 </when>
9111 <when value="not">
9112 <param name="query_text" type="text" label="Searched term"/>
9113 <param name="not_query_text" type="text" label="Limiting term"/>
9114 </when>
9115 <when value="range">
9116 <param name="min" type="text" label="From"/>
9117 <param name="max" type="text" label="To"/>
9118 </when>
9119 </conditional>
9120 </repeat>
9121 </when>
9122
9123 <when value="uniref50">
9124 <param name="fields" type="select" label="Fields to extract" multiple="true">
9125 <option value="TAXONOMY" selected="true">TAXONOMY</option>
9126 <option value="UNIPARC" selected="true">UNIPARC</option>
9127 <option value="UNIPROT" selected="true">UNIPROT</option>
9128 <option value="UNIREF100" selected="true">UNIREF100</option>
9129 <option value="UNIREF90" selected="true">UNIREF90</option>
9130 <option value="domain_source" selected="true">domain_source</option>
9131 <option value="id" selected="true">id</option>
9132 <option value="length" selected="true">length</option>
9133 <option value="name" selected="true">name</option>
9134 <validator type="no_options" message="Please select at least one field" />
9135 </param>
9136 <repeat name="queries" title="Add a query">
9137 <param name="combination_operation" type="select" label="Combination operation" >
9138 <option value="AND">AND</option>
9139 <option value="OR">OR</option>
9140 <option value="NOT">NOT</option>
9141 </param>
9142 <param name="query_field" type="select" label="Fields" >
9143 <option value="TAXONOMY">TAXONOMY</option>
9144 <option value="UNIPARC">UNIPARC</option>
9145 <option value="UNIPROT">UNIPROT</option>
9146 <option value="UNIREF100">UNIREF100</option>
9147 <option value="UNIREF90">UNIREF90</option>
9148 <option value="crc64_iso">crc64_iso</option>
9149 <option value="dbref_protein_name">dbref_protein_name</option>
9150 <option value="dbref_source_organism">dbref_source_organism</option>
9151 <option value="dbref_uniprotkb_id">dbref_uniprotkb_id</option>
9152 <option value="domain_source">domain_source</option>
9153 <option value="entry_common_taxon">entry_common_taxon</option>
9154 <option value="entry_common_taxon_id">entry_common_taxon_id</option>
9155 <option value="id">id</option>
9156 <option value="last_modification_date">last_modification_date</option>
9157 <option value="length">length</option>
9158 <option value="md5">md5</option>
9159 <option value="name">name</option>
9160 </param>
9161 <conditional name="comp_operation">
9162 <param name="operation" type="select" label="Comparison operation" >
9163 <option value="equal">equal</option>
9164 <option value="not">not</option>
9165 <option value="range">range</option>
9166 </param>
9167 <when value="equal">
9168 <param name="query_text" type="text" label="Searched term"/>
9169 </when>
9170 <when value="not">
9171 <param name="query_text" type="text" label="Searched term"/>
9172 <param name="not_query_text" type="text" label="Limiting term"/>
9173 </when>
9174 <when value="range">
9175 <param name="min" type="text" label="From"/>
9176 <param name="max" type="text" label="To"/>
9177 </when>
9178 </conditional>
9179 </repeat>
9180 </when>
9181
9182 <when value="uniref90">
9183 <param name="fields" type="select" label="Fields to extract" multiple="true">
9184 <option value="TAXONOMY" selected="true">TAXONOMY</option>
9185 <option value="UNIPARC" selected="true">UNIPARC</option>
9186 <option value="UNIPROT" selected="true">UNIPROT</option>
9187 <option value="UNIREF100" selected="true">UNIREF100</option>
9188 <option value="UNIREF50" selected="true">UNIREF50</option>
9189 <option value="domain_source" selected="true">domain_source</option>
9190 <option value="id" selected="true">id</option>
9191 <option value="length" selected="true">length</option>
9192 <option value="name" selected="true">name</option>
9193 <validator type="no_options" message="Please select at least one field" />
9194 </param>
9195 <repeat name="queries" title="Add a query">
9196 <param name="combination_operation" type="select" label="Combination operation" >
9197 <option value="AND">AND</option>
9198 <option value="OR">OR</option>
9199 <option value="NOT">NOT</option>
9200 </param>
9201 <param name="query_field" type="select" label="Fields" >
9202 <option value="TAXONOMY">TAXONOMY</option>
9203 <option value="UNIPARC">UNIPARC</option>
9204 <option value="UNIPROT">UNIPROT</option>
9205 <option value="UNIREF100">UNIREF100</option>
9206 <option value="UNIREF50">UNIREF50</option>
9207 <option value="crc64_iso">crc64_iso</option>
9208 <option value="dbref_protein_name">dbref_protein_name</option>
9209 <option value="dbref_source_organism">dbref_source_organism</option>
9210 <option value="dbref_uniprotkb_id">dbref_uniprotkb_id</option>
9211 <option value="domain_source">domain_source</option>
9212 <option value="entry_common_taxon">entry_common_taxon</option>
9213 <option value="entry_common_taxon_id">entry_common_taxon_id</option>
9214 <option value="id">id</option>
9215 <option value="last_modification_date">last_modification_date</option>
9216 <option value="length">length</option>
9217 <option value="md5">md5</option>
9218 <option value="name">name</option>
9219 </param>
9220 <conditional name="comp_operation">
9221 <param name="operation" type="select" label="Comparison operation" >
9222 <option value="equal">equal</option>
9223 <option value="not">not</option>
9224 <option value="range">range</option>
9225 </param>
9226 <when value="equal">
9227 <param name="query_text" type="text" label="Searched term"/>
9228 </when>
9229 <when value="not">
9230 <param name="query_text" type="text" label="Searched term"/>
9231 <param name="not_query_text" type="text" label="Limiting term"/>
9232 </when>
9233 <when value="range">
9234 <param name="min" type="text" label="From"/>
9235 <param name="max" type="text" label="To"/>
9236 </when>
9237 </conditional>
9238 </repeat>
9239 </when>
9240
9241 <when value="wormbaseParasite">
9242 <param name="fields" type="select" label="Fields to extract" multiple="true">
9243 <option value="ARRAYEXPRESS" selected="true">ARRAYEXPRESS</option>
9244 <option value="EMBL" selected="true">EMBL</option>
9245 <option value="ENSEMBL_ORTHOLOG" selected="true">ENSEMBL_ORTHOLOG</option>
9246 <option value="ENTREZGENE" selected="true">ENTREZGENE</option>
9247 <option value="EPD" selected="true">EPD</option>
9248 <option value="GENEDB" selected="true">GENEDB</option>
9249 <option value="GO" selected="true">GO</option>
9250 <option value="INTERPRO" selected="true">INTERPRO</option>
9251 <option value="KEGG_ENZYME" selected="true">KEGG_ENZYME</option>
9252 <option value="MEROPS" selected="true">MEROPS</option>
9253 <option value="METACYC" selected="true">METACYC</option>
9254 <option value="NCBI_TAXONOMY_ID" selected="true">NCBI_TAXONOMY_ID</option>
9255 <option value="PDB" selected="true">PDB</option>
9256 <option value="PROTEIN_ID" selected="true">PROTEIN_ID</option>
9257 <option value="REACTOME" selected="true">REACTOME</option>
9258 <option value="REFSEQ_MRNA" selected="true">REFSEQ_MRNA</option>
9259 <option value="REFSEQ_MRNA_PREDICTED" selected="true">REFSEQ_MRNA_PREDICTED</option>
9260 <option value="REFSEQ_NCRNA" selected="true">REFSEQ_NCRNA</option>
9261 <option value="REFSEQ_PEPTIDE" selected="true">REFSEQ_PEPTIDE</option>
9262 <option value="REFSEQ_PEPTIDE_PREDICTED" selected="true">REFSEQ_PEPTIDE_PREDICTED</option>
9263 <option value="SCHISTODB" selected="true">SCHISTODB</option>
9264 <option value="UNIGENE" selected="true">UNIGENE</option>
9265 <option value="UNIPARC" selected="true">UNIPARC</option>
9266 <option value="UNIPATHWAY" selected="true">UNIPATHWAY</option>
9267 <option value="UNIPROT" selected="true">UNIPROT</option>
9268 <option value="WIKIGENE" selected="true">WIKIGENE</option>
9269 <option value="WORMBASE_GENE" selected="true">WORMBASE_GENE</option>
9270 <option value="WORMBASE_GSEQNAME" selected="true">WORMBASE_GSEQNAME</option>
9271 <option value="WORMBASE_LOCUS" selected="true">WORMBASE_LOCUS</option>
9272 <option value="WORMBASE_TRANSCRIPT" selected="true">WORMBASE_TRANSCRIPT</option>
9273 <option value="WORMPEP_ID" selected="true">WORMPEP_ID</option>
9274 <option value="description" selected="true">description</option>
9275 <option value="domain_source" selected="true">domain_source</option>
9276 <option value="exon" selected="true">exon</option>
9277 <option value="exon_count" selected="true">exon_count</option>
9278 <option value="featuretype" selected="true">featuretype</option>
9279 <option value="gene_name" selected="true">gene_name</option>
9280 <option value="gene_synonym" selected="true">gene_synonym</option>
9281 <option value="genetree" selected="true">genetree</option>
9282 <option value="genomic_unit" selected="true">genomic_unit</option>
9283 <option value="id" selected="true">id</option>
9284 <option value="location" selected="true">location</option>
9285 <option value="name" selected="true">name</option>
9286 <option value="peptide" selected="true">peptide</option>
9287 <option value="source" selected="true">source</option>
9288 <option value="species" selected="true">species</option>
9289 <option value="system_name" selected="true">system_name</option>
9290 <option value="transcript" selected="true">transcript</option>
9291 <option value="transcript_count" selected="true">transcript_count</option>
9292 <validator type="no_options" message="Please select at least one field" />
9293 </param>
9294 <repeat name="queries" title="Add a query">
9295 <param name="combination_operation" type="select" label="Combination operation" >
9296 <option value="AND">AND</option>
9297 <option value="OR">OR</option>
9298 <option value="NOT">NOT</option>
9299 </param>
9300 <param name="query_field" type="select" label="Fields" >
9301 <option value="ARRAYEXPRESS">ARRAYEXPRESS</option>
9302 <option value="EMBL">EMBL</option>
9303 <option value="ENSEMBL_ORTHOLOG">ENSEMBL_ORTHOLOG</option>
9304 <option value="ENTREZGENE">ENTREZGENE</option>
9305 <option value="EPD">EPD</option>
9306 <option value="GENEDB">GENEDB</option>
9307 <option value="GO">GO</option>
9308 <option value="INTERPRO">INTERPRO</option>
9309 <option value="KEGG_ENZYME">KEGG_ENZYME</option>
9310 <option value="MEROPS">MEROPS</option>
9311 <option value="METACYC">METACYC</option>
9312 <option value="NCBI_TAXONOMY_ID">NCBI_TAXONOMY_ID</option>
9313 <option value="PDB">PDB</option>
9314 <option value="PROTEIN_ID">PROTEIN_ID</option>
9315 <option value="REACTOME">REACTOME</option>
9316 <option value="REFSEQ_MRNA">REFSEQ_MRNA</option>
9317 <option value="REFSEQ_MRNA_PREDICTED">REFSEQ_MRNA_PREDICTED</option>
9318 <option value="REFSEQ_NCRNA">REFSEQ_NCRNA</option>
9319 <option value="REFSEQ_PEPTIDE">REFSEQ_PEPTIDE</option>
9320 <option value="REFSEQ_PEPTIDE_PREDICTED">REFSEQ_PEPTIDE_PREDICTED</option>
9321 <option value="SCHISTODB">SCHISTODB</option>
9322 <option value="UNIGENE">UNIGENE</option>
9323 <option value="UNIPARC">UNIPARC</option>
9324 <option value="UNIPATHWAY">UNIPATHWAY</option>
9325 <option value="UNIPROT">UNIPROT</option>
9326 <option value="WIKIGENE">WIKIGENE</option>
9327 <option value="WORMBASE_GENE">WORMBASE_GENE</option>
9328 <option value="WORMBASE_GSEQNAME">WORMBASE_GSEQNAME</option>
9329 <option value="WORMBASE_LOCUS">WORMBASE_LOCUS</option>
9330 <option value="WORMBASE_TRANSCRIPT">WORMBASE_TRANSCRIPT</option>
9331 <option value="WORMPEP_ID">WORMPEP_ID</option>
9332 <option value="collection">collection</option>
9333 <option value="database">database</option>
9334 <option value="description">description</option>
9335 <option value="domain">domain</option>
9336 <option value="domain_count">domain_count</option>
9337 <option value="domain_source">domain_source</option>
9338 <option value="exon">exon</option>
9339 <option value="gene_name">gene_name</option>
9340 <option value="gene_synonym">gene_synonym</option>
9341 <option value="genetree">genetree</option>
9342 <option value="genomic_unit">genomic_unit</option>
9343 <option value="haplotype">haplotype</option>
9344 <option value="id">id</option>
9345 <option value="id_noversion">id_noversion</option>
9346 <option value="name">name</option>
9347 <option value="peptide">peptide</option>
9348 <option value="seq_region_name">seq_region_name</option>
9349 <option value="source">source</option>
9350 <option value="species">species</option>
9351 <option value="system_name">system_name</option>
9352 <option value="transcript">transcript</option>
9353 </param>
9354 <conditional name="comp_operation">
9355 <param name="operation" type="select" label="Comparison operation" >
9356 <option value="equal">equal</option>
9357 <option value="not">not</option>
9358 <option value="range">range</option>
9359 </param>
9360 <when value="equal">
9361 <param name="query_text" type="text" label="Searched term"/>
9362 </when>
9363 <when value="not">
9364 <param name="query_text" type="text" label="Searched term"/>
9365 <param name="not_query_text" type="text" label="Limiting term"/>
9366 </when>
9367 <when value="range">
9368 <param name="min" type="text" label="From"/>
9369 <param name="max" type="text" label="To"/>
9370 </when>
9371 </conditional>
9372 </repeat>
9373 </when>
9374
9375 </conditional>
9376 </xml>
9377 <xml name="citations">
9378 <citations>
9379 <citation type="doi">10.1093/bib/bbp065</citation>
9380 <citation type="doi">10.1093/nar/gkv316</citation>
9381 </citations>
9382 </xml>
9383 </macros>