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comparison edger.xml @ 16:ae2aad0a6d50 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 4b17306763bc8eb92c8967c7b4b57abcc514e670
author iuc
date Wed, 04 Sep 2024 15:50:01 +0000
parents 5bf899c13979
children
comparison
equal deleted inserted replaced
15:5bf899c13979 16:ae2aad0a6d50
2 <description> 2 <description>
3 Perform differential expression of count data 3 Perform differential expression of count data
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <token name="@TOOL_VERSION@">3.36.0</token> 6 <token name="@TOOL_VERSION@">3.36.0</token>
7 <token name="@VERSION_SUFFIX@">4</token> 7 <token name="@VERSION_SUFFIX@">5</token>
8 </macros> 8 </macros>
9 <edam_topics> 9 <edam_topics>
10 <edam_topic>topic_3308</edam_topic> 10 <edam_topic>topic_3308</edam_topic>
11 </edam_topics> 11 </edam_topics>
12 <edam_operations> 12 <edam_operations>
128 <option value="matrix">Single Count Matrix</option> 128 <option value="matrix">Single Count Matrix</option>
129 </param> 129 </param>
130 <when value="files"> 130 <when value="files">
131 <repeat name="rep_factor" title="Factor" min="1"> 131 <repeat name="rep_factor" title="Factor" min="1">
132 <param name="factorName" type="text" label="Name" help="Name of experiment factor of interest (e.g. Genotype). One factor must be entered and there must be two or more groups per factor. Optional additional factors (e.g. Batch) can be entered using the Insert Factor button below, see Help section for more information. NOTE: Please only use letters, numbers or underscores, and the first character of each factor must be a letter"> 132 <param name="factorName" type="text" label="Name" help="Name of experiment factor of interest (e.g. Genotype). One factor must be entered and there must be two or more groups per factor. Optional additional factors (e.g. Batch) can be entered using the Insert Factor button below, see Help section for more information. NOTE: Please only use letters, numbers or underscores, and the first character of each factor must be a letter">
133 <sanitizer> 133 <validator type="empty_field"/>
134 <valid initial="string.letters,string.digits"> 134 <validator type="regex" message="Please only use letters, numbers or underscores">^[\w]+$</validator>
135 <add value="_"/>
136 </valid>
137 </sanitizer>
138 </param> 135 </param>
139 <repeat name="rep_group" title="Group" min="2" default="2"> 136 <repeat name="rep_group" title="Group" min="2" default="2">
140 <param name="groupName" type="text" label="Name" help="Name of group that the counts files belong to (e.g. WT or Mut). NOTE: Please only use letters, numbers or underscores (case sensitive), and the first character of each group must be a letter"> 137 <param name="groupName" type="text" label="Name" help="Name of group that the counts files belong to (e.g. WT or Mut). NOTE: Please only use letters, numbers or underscores (case sensitive), and the first character of each group must be a letter">
141 <sanitizer> 138 <sanitizer>
142 <valid initial="string.letters,string.digits"> 139 <valid initial="string.letters,string.digits">