Mercurial > repos > iuc > edger
diff edger.xml @ 1:2a16413ec60d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 22882a8eabae0dcc15938423852d1325303b0b78
| author | iuc |
|---|---|
| date | Tue, 30 Jan 2018 04:07:08 -0500 |
| parents | 9bdff28ae1b1 |
| children | a1634a9c2ee1 |
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--- a/edger.xml Tue Nov 07 08:18:14 2017 -0500 +++ b/edger.xml Tue Jan 30 04:07:08 2018 -0500 @@ -1,20 +1,19 @@ -<tool id="edger" name="edgeR" version="3.16.5"> +<tool id="edger" name="edgeR" version="3.20.7.0"> <description> Perform differential expression of count data </description> <requirements> - <requirement type="package" version="3.16.5">bioconductor-edger</requirement> + <requirement type="package" version="3.20.7">bioconductor-edger</requirement> <requirement type="package" version="0.2.15">r-rjson</requirement> <requirement type="package" version="1.20.0">r-getopt</requirement> + <requirement type="package" version="1.4.30">r-statmod</requirement> <!-- required for alpha function used with plotMD --> - <requirement type="package" version="0.4.1">r-scales</requirement> - <!-- This should be in limma conda now - check why still needed? --> - <requirement type="package" version="1.4.30">r-statmod</requirement> + <requirement type="package" version="0.5.0">r-scales</requirement> </requirements> <version_command><![CDATA[ - echo $(R --version | grep version | grep -v GNU)", edgeR version" $(R --vanilla --slave -e "library(edgeR); cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", scales version" $(R --vanilla --slave -e "library(scales); cat(sessionInfo()\$otherPkgs\$scales\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ") +echo $(R --version | grep version | grep -v GNU)", edgeR version" $(R --vanilla --slave -e "library(edgeR); cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", scales version" $(R --vanilla --slave -e "library(scales); cat(sessionInfo()\$otherPkgs\$scales\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ") ]]></version_command> <command detect_errors="exit_code"><![CDATA[