Mercurial > repos > iuc > edger

diff edger.xml @ 8:3d89af8a44f0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 215a0f27f3de87506895ac655f801c40e8c7edbc"
author iuc
date Thu, 03 Jun 2021 19:34:18 +0000
parents 334ce9b1bac5
children 6e53e565fc6a
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line diff
--- a/edger.xml	Thu Aug 08 06:44:11 2019 -0400
+++ b/edger.xml	Thu Jun 03 19:34:18 2021 +0000
@@ -1,16 +1,26 @@
-<tool id="edger" name="edgeR" version="3.24.1+galaxy1">
+<tool id="edger" name="edgeR" version="3.34.0">
     <description>
         Perform differential expression of count data
     </description>
+    <xrefs>
+        <xref type="bio.tools">edger</xref>
+    </xrefs>
+    <edam_topics>
+        <edam_topic>topic_3308</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3563</edam_operation>
+        <edam_operation>operation_3223</edam_operation>
+    </edam_operations>
 
     <requirements>
-        <requirement type="package" version="3.24.1">bioconductor-edger</requirement>
-        <requirement type="package" version="3.38.3">bioconductor-limma</requirement>
+        <requirement type="package" version="3.34.0">bioconductor-edger</requirement>
+        <requirement type="package" version="3.48.0">bioconductor-limma</requirement>
         <requirement type="package" version="0.2.20">r-rjson</requirement>
-        <requirement type="package" version="1.20.2">r-getopt</requirement>
-        <requirement type="package" version="1.4.30">r-statmod</requirement>
+        <requirement type="package" version="1.20.3">r-getopt</requirement>
+        <requirement type="package" version="1.4.36">r-statmod</requirement>
         <!-- required for alpha function used with plotMD -->
-        <requirement type="package" version="1.0.0">r-scales</requirement>
+        <requirement type="package" version="1.1.1">r-scales</requirement>
     </requirements>
 
     <version_command><![CDATA[