Mercurial > repos > iuc > edger

diff edger.xml @ 15:5bf899c13979 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 025a0d70be99e50ae89ad78a70cc8c51571ea1a2
author iuc
date Wed, 22 Nov 2023 03:57:37 +0000
parents 070900306913
children ae2aad0a6d50
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line diff
--- a/edger.xml	Wed Oct 11 11:13:07 2023 +0000
+++ b/edger.xml	Wed Nov 22 03:57:37 2023 +0000
@@ -4,7 +4,7 @@
     </description>
     <macros>
         <token name="@TOOL_VERSION@">3.36.0</token>
-        <token name="@VERSION_SUFFIX@">3</token>
+        <token name="@VERSION_SUFFIX@">4</token>
     </macros>
     <edam_topics>
         <edam_topic>topic_3308</edam_topic>
@@ -694,7 +694,7 @@
             <param name="cinfo" value="contrasts_file.txt"/>
             <param name="formula" value="~ 0 + Genotype + Batch"/>
             <param name="normalisationOption" value="TMM"/>
-            <output_collection name="outTables" count="2">
+            <output_collection name="outTables" count="3">
                 <element name="edgeR_Mut-WT" ftype="tabular">
                     <assert_contents>
                         <has_text_matching expression="GeneID.*logFC.*logCPM.*F.*PValue.*FDR"/>
@@ -706,6 +706,11 @@
                         <has_text_matching expression="GeneID.*logFC.*logCPM.*F.*PValue.*FDR"/>
                     </assert_contents>
                 </element>
+                <element name="edgeR_(2*Mut_3*WT)-WT" ftype="tabular">
+                    <assert_contents>
+                        <has_text_matching expression="GeneID.*logFC.*logCPM.*F.*PValue.*FDR"/>
+                    </assert_contents>
+                </element>
             </output_collection>
         </test>
     </tests>