Mercurial > repos > iuc > edger

diff edger.xml @ 5:fb9b9f0f2f06 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 91bdcc6a5a46173be6546d590cdf3f311c2b1476
author iuc
date Tue, 05 Feb 2019 20:57:30 -0500
parents 4730985c816f
children 555659de7321
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--- a/edger.xml	Sat Jan 05 05:32:33 2019 -0500
+++ b/edger.xml	Tue Feb 05 20:57:30 2019 -0500
@@ -1,11 +1,11 @@
-<tool id="edger" name="edgeR" version="3.22.5">
+<tool id="edger" name="edgeR" version="3.24.1">
     <description>
         Perform differential expression of count data
     </description>
 
     <requirements>
-        <requirement type="package" version="3.22.5">bioconductor-edger</requirement>
-        <requirement type="package" version="3.36.5">bioconductor-limma</requirement>
+        <requirement type="package" version="3.24.1">bioconductor-edger</requirement>
+        <requirement type="package" version="3.38.3">bioconductor-limma</requirement>
         <requirement type="package" version="0.2.20">r-rjson</requirement>
         <requirement type="package" version="1.20.2">r-getopt</requirement>
         <requirement type="package" version="1.4.30">r-statmod</requirement>
@@ -424,7 +424,7 @@
                 <element name="edgeR_normcounts" ftype="tabular" >
                     <assert_contents>
                         <has_text_matching expression="GeneID.*Mut1.*Mut2.*Mut3.*WT1.*WT2.*WT3" />
-                        <has_text_matching expression="11304.*15.7535" />
+                        <has_text_matching expression="11304.*15.75" />
                    </assert_contents>
                </element>
             </output_collection>
@@ -503,7 +503,7 @@
                 <element name="edgeR_normcounts" ftype="tabular" >
                     <assert_contents>
                         <has_text_matching expression="Mut1.*Mut2.*Mut3.*WT1.*WT2.*WT3" />
-                        <has_text_matching expression="11304.*Abca4.*15.7535" />
+                        <has_text_matching expression="11304.*Abca4.*15.75" />
                    </assert_contents>
                </element>
             </output_collection>