Mercurial > repos > iuc > ega_download_client

diff pyega3.xml @ 2:e82175804eb1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pyega3 commit eb28ccaa03633b3500b38e2eb304c55e1682c489
author iuc
date Tue, 14 Jun 2022 17:06:07 +0000
parents 1162bfd9f782
children 8bbe09a52904
line wrap: on
line diff
--- a/pyega3.xml	Tue Apr 12 11:36:51 2022 +0000
+++ b/pyega3.xml	Tue Jun 14 17:06:07 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="pyega3" name="EGA Download Client" version="@TOOL_VERSION@+galaxy0" profile="21.01" >
+<tool id="pyega3" name="EGA Download Client" version="@TOOL_VERSION@+galaxy1" profile="21.01" >
     <macros>
         <token name="@TOOL_VERSION@">4.0.0</token>
     </macros>
@@ -32,7 +32,7 @@
       --max-retries 10
       #if $action.range.reference_name
         --reference-name '$action.range.reference_name'
-        #if $action.range.start
+        #if str($action.range.start)
           --start $action.range.start
         #end if
         #if $action.range.end
@@ -52,7 +52,7 @@
           --max-retries 10
           #if $action.range.reference_name
           --reference-name '$action.range.reference_name'
-          #if $action.range.start
+          #if str($action.range.start)
             --start $action.range.start
           #end if
           #if $action.range.end
@@ -165,7 +165,7 @@
             <param name="action_type" value="download_file"/>
             <param name="file_id" value="EGAF00001753756"/>
             <param name="reference_name" value="1"/>
-            <param name="start" value="100"/>
+            <param name="start" value="0"/>
             <param name="end" value="10000"/>
             <output name="downloaded_file" ftype="bam" md5="e576a38748feec45aa45191f6e902ce2"/>
         </test>
@@ -183,11 +183,11 @@
             <param name="id_table" value="filelist2.tabular"/>
             <param name="id_column" value="1"/>
             <param name="reference_name" value="1"/>
-            <param name="start" value="100"/>
+            <param name="start" value="0"/>
             <param name="end" value="10000"/>
             <output_collection name="downloaded_file_collection" count="2">
-                <element name="NA19239_genomic_range_1_100_10000" md5="bcdcf18846233cbe5cc8afd95168552c" />
-                <element name="NA19240_genomic_range_1_100_10000" md5="e576a38748feec45aa45191f6e902ce2" />
+                <element name="NA19239_genomic_range_1_0_10000" md5="bcdcf18846233cbe5cc8afd95168552c" />
+                <element name="NA19240_genomic_range_1_0_10000" md5="e576a38748feec45aa45191f6e902ce2" />
             </output_collection>
         </test>
     </tests>