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annotate test-data/ranked-h-gene-sets-IL13Ant-IL13_batch_all.txt @ 1:73281fbdf6c1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
author iuc
date Thu, 15 Feb 2018 02:34:59 -0500
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73281fbdf6c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
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1 Rank ID GeneSet BroadUrl Description PubMedID NumGenes Contributor p.value p.adj vote.rank avg.rank med.rank min.pvalue min.rank avg.logfc avg.logfc.dir direction significance camera safe gage zscore gsva globaltest ora ssgsea padog plage fry roast
73281fbdf6c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
iuc
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2 1 M5928 HALLMARK_MYC_TARGETS_V2 http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_MYC_TARGETS_V2.html A subgroup of genes regulated by MYC - version 2 (v2). 53/58 Arthur Liberzon 2.69713922630138e-07 2.24761602191782e-06 5 9 3 2.24761629976564e-08 1 0.359329542834304 -0.36180948485806 -1 5.4326602414965 3 3 41 5 2 3 38 5 5 1 1 1
73281fbdf6c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
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3 2 M5932 HALLMARK_INFLAMMATORY_RESPONSE http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INFLAMMATORY_RESPONSE.html Genes defining inflammatory response. 175/200 Arthur Liberzon 1.11005416363834e-12 1.85009027273056e-11 5 7 6.5 9.25045136365749e-14 1 2.30703143698757 2.37290331728617 1 66.3484191472523 4 9 1 15 1 12 2 1 1 18 11 9
73281fbdf6c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
iuc
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4 3 M5913 HALLMARK_INTERFERON_GAMMA_RESPONSE http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INTERFERON_GAMMA_RESPONSE.html Genes up-regulated in response to IFNG [GeneID=3458]. 181/200 Arthur Liberzon 1.18424540125318e-21 2.96061350313295e-20 5 11.75 7 9.86871167710982e-23 2 0.883356836238503 1.02316711345591 1 46.2225133313255 2 31 7 2 5 17 30 7 22 3 7 8
73281fbdf6c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
iuc
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5 4 M5890 HALLMARK_TNFA_SIGNALING_VIA_NFKB http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_TNFA_SIGNALING_VIA_NFKB.html Genes regulated by NF-kB in response to TNF [GeneID=7124]. 181/200 Arthur Liberzon 2.03460035619483e-07 2.03460035619483e-06 5 10.5833333333333 9 1.69550045493871e-08 2 2.41712304125514 2.41712304125514 1 36.8602254948149 5 8 3 13 3 26 19 2 2 26 10 10
73281fbdf6c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
iuc
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6 5 M5895 HALLMARK_WNT_BETA_CATENIN_SIGNALING http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_WNT_BETA_CATENIN_SIGNALING.html Genes up-regulated by activation of WNT signaling through accumulation of beta catenin CTNNB1 [GeneID=1499]. 35/42 Arthur Liberzon 0.00629753896190303 0.017493163783064 10 12.25 9.5 0.000526315789473684 2 2.93272326169216 -2.93272326169216 -1 13.8032973517574 15 5 32 21 10 2 9 9 6 7 15 16