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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit c2313b506b3b8ae860bb844b979397d87de4fb44"
author iuc
date Mon, 28 Jun 2021 09:45:14 +0000
parents a8a083193440
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a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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2 <html xmlns='http://www.w3.org/1999/xhtml' xml:lang='en' lang='en'><head>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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3 <meta http-equiv="Content-Type" content="text/html; charset=utf-8"></meta>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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4 <title>Ensemble of Gene
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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5 Set Enrichment Analyses (EGSEA) - Report</title>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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9 </head>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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10 <body><h1><div><img src="EGSEA_logo.png" width="150" style="float:left;"></img><h1 style="color:#0f284f; position:relative; top:18px; left:10px;">Gene Set Testing Report</h1></div></h1><br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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11 <h2 style="color:#22519b">Analysis Parameters</h2><b>Total number of genes: </b>17343<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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12 <b>Total number of samples: </b>5<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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13 <b>Number of contrasts: </b>1<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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14 <b>Base GSEA methods: </b>camera (limma:3.34.1), globaltest (globaltest:5.32.0), ora (stats:3.4.1)<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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15 <b>P-value combine method: </b>wilkinson<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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16 <b>Sorting statistic: </b>med.rank<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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17 <b>Fold changes calculated: </b>Yes<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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18 <b>Gene IDs - Symbols mapping used: </b>Yes<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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19 <b>Organism: </b>Homo sapiens<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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20 <b>Gene set collections: </b>h Hallmark Signatures (5.2, 07 March 2017)<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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21 <b>EGSEA version: </b>1.6.0<br/>
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22 <b>EGSEAdata version: </b>1.6.0<br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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23 <h2 style="color:#22519b">Analysis Results</h2><ul style="list-style-type:square">
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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24 <il><b>IL13Ant-IL13</b>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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25 <ul><li>h Hallmark Signatures (<a href="./ranked-gene-sets-base/ranked-h-gene-sets-IL13Ant-IL13.html">Stats Table</a>, <a href="./hm-top-gs-h/IL13Ant-IL13-allHeatmaps.html">Heatmaps</a>, <a href="./summary/IL13Ant-IL13-h-summary.html">Summary Plots</a>, <a target="_blank" href="./ranked-gene-sets-base/ranked-h-gene-sets-IL13Ant-IL13.txt">Download
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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26 Stats</a>)</li></ul></il></ul>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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27 <br/><br/><font size="-2">(Page generated on Mon Jan 8 03:48:44 2018 by <a href="http://www.embl.de/~gpau/hwriter/index.html">hwriter</a> )</font><br/>
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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28 </body></html>