Mercurial > repos > iuc > egsea
diff egsea.xml @ 4:fba1660fb717 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit c2313b506b3b8ae860bb844b979397d87de4fb44"
| author | iuc |
|---|---|
| date | Mon, 28 Jun 2021 09:45:14 +0000 |
| parents | 31ea4992b948 |
| children |
line wrap: on
line diff
--- a/egsea.xml Sat Feb 09 09:15:52 2019 -0500 +++ b/egsea.xml Mon Jun 28 09:45:14 2021 +0000 @@ -1,11 +1,11 @@ -<tool id="egsea" name="EGSEA" version="1.10.0"> +<tool id="egsea" name="EGSEA" version="1.20.0"> <description> easy and efficient ensemble gene set testing</description> <requirements> - <requirement type="package" version="1.10.0">bioconductor-egsea</requirement> - <requirement type="package" version="1.6.0">r-optparse</requirement> + <requirement type="package" version="1.20.0">bioconductor-egsea</requirement> + <requirement type="package" version="1.6.6">r-optparse</requirement> <requirement type="package" version="0.2.20">r-rjson</requirement> <!--statmod is required for fry--> - <requirement type="package" version="1.4.30">r-statmod</requirement> + <requirement type="package" version="1.4.36">r-statmod</requirement> </requirements> <version_command><![CDATA[ echo $(R --version | grep version | grep -v GNU)", EGSEA version" $(R --vanilla --slave -e "library(EGSEA); cat(sessionInfo()\$otherPkgs\$EGSEA\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", statmod version" $(R --vanilla --slave -e "library(statmod); cat(sessionInfo()\$otherPkgs\$statmod\$Version)" 2> /dev/null | grep -v -i "WARNING: ") @@ -155,7 +155,7 @@ <option value="rat">Rat</option> </param> - <param name="base_methods" type="select" display="checkboxes" multiple="True" min="3" label="Gene Set Testing Methods" help="Select at least 3 gene set testing methods"> + <param name="base_methods" type="select" display="checkboxes" multiple="True" min="3" label="Gene Set Testing Methods" help="Select at least 3 gene set testing methods for ensemble analysis. Alternatively, a single method can be chosen."> <option value="camera" selected="True">camera</option> <option value="safe">safe</option> <option value="gage">gage</option>