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view test-data/ranked-h-gene-sets-IL13Ant-IL13_batch_all.txt @ 1:73281fbdf6c1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
author iuc
date Thu, 15 Feb 2018 02:34:59 -0500
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Rank	ID	GeneSet	BroadUrl	Description	PubMedID	NumGenes	Contributor	p.value	p.adj	vote.rank	avg.rank	med.rank	min.pvalue	min.rank	avg.logfc	avg.logfc.dir	direction	significance	camera	safe	gage	zscore	gsva	globaltest	ora	ssgsea	padog	plage	fry	roast
1	M5928	HALLMARK_MYC_TARGETS_V2	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_MYC_TARGETS_V2.html	A subgroup of genes regulated by MYC - version 2 (v2).		53/58	Arthur Liberzon	2.69713922630138e-07	2.24761602191782e-06	5	9	3	2.24761629976564e-08	1	0.359329542834304	-0.36180948485806	-1	5.4326602414965	3	3	41	5	2	3	38	5	5	1	1	1
2	M5932	HALLMARK_INFLAMMATORY_RESPONSE	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INFLAMMATORY_RESPONSE.html	Genes defining inflammatory response.		175/200	Arthur Liberzon	1.11005416363834e-12	1.85009027273056e-11	5	7	6.5	9.25045136365749e-14	1	2.30703143698757	2.37290331728617	1	66.3484191472523	4	9	1	15	1	12	2	1	1	18	11	9
3	M5913	HALLMARK_INTERFERON_GAMMA_RESPONSE	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INTERFERON_GAMMA_RESPONSE.html	Genes up-regulated in response to IFNG [GeneID=3458].		181/200	Arthur Liberzon	1.18424540125318e-21	2.96061350313295e-20	5	11.75	7	9.86871167710982e-23	2	0.883356836238503	1.02316711345591	1	46.2225133313255	2	31	7	2	5	17	30	7	22	3	7	8
4	M5890	HALLMARK_TNFA_SIGNALING_VIA_NFKB	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_TNFA_SIGNALING_VIA_NFKB.html	Genes regulated by NF-kB in response to TNF [GeneID=7124].		181/200	Arthur Liberzon	2.03460035619483e-07	2.03460035619483e-06	5	10.5833333333333	9	1.69550045493871e-08	2	2.41712304125514	2.41712304125514	1	36.8602254948149	5	8	3	13	3	26	19	2	2	26	10	10
5	M5895	HALLMARK_WNT_BETA_CATENIN_SIGNALING	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_WNT_BETA_CATENIN_SIGNALING.html	Genes up-regulated by activation of WNT signaling through accumulation of beta catenin CTNNB1 [GeneID=1499].		35/42	Arthur Liberzon	0.00629753896190303	0.017493163783064	10	12.25	9.5	0.000526315789473684	2	2.93272326169216	-2.93272326169216	-1	13.8032973517574	15	5	32	21	10	2	9	9	6	7	15	16