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view test-data/ranked-h-gene-sets-compare.txt @ 1:73281fbdf6c1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 225518a08941e7ef8e5c402e3696ec5fa6e592a0
author iuc
date Thu, 15 Feb 2018 02:34:59 -0500
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Rank	ID	GeneSet	BroadUrl	Description	PubMedID	NumGenes	Contributor	p.value	p.adj	vote.rank	avg.rank	med.rank	min.pvalue	min.rank	avg.logfc	avg.logfc.dir	direction	significance	camera	globaltest	ora
1	M5890	HALLMARK_TNFA_SIGNALING_VIA_NFKB	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_TNFA_SIGNALING_VIA_NFKB.html	Genes regulated by NF-kB in response to TNF [GeneID=7124].		181/200	Arthur Liberzon	3.69843944783645e-09	6.16406574639408e-08	5	10	3	1.23281315079864e-09	1	0.588637134386457	-0.680899745245093	-1	20.6439242624481	3	26	1
2	M5895	HALLMARK_WNT_BETA_CATENIN_SIGNALING	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_WNT_BETA_CATENIN_SIGNALING.html	Genes up-regulated by activation of WNT signaling through accumulation of beta catenin CTNNB1 [GeneID=1499].		35/42	Arthur Liberzon	0.0440661300653943	0.169485115636132	5	6.66666666666667	5	0.014909910604653	2	0.412052814817513	0.432421220391424	1	1.53878145448751	13	2	5
3	M5928	HALLMARK_MYC_TARGETS_V2	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_MYC_TARGETS_V2.html	A subgroup of genes regulated by MYC - version 2 (v2).		53/58	Arthur Liberzon	4.79647602359615e-07	4.79647602359616e-06	5	12.3333333333333	5	1.59882559682303e-07	3	0.342550383131631	0.340902674013207	1	8.85877098589516	5	3	29
4	M5903	HALLMARK_NOTCH_SIGNALING	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_NOTCH_SIGNALING.html	Genes up-regulated by activation of Notch signaling.		28/32	Arthur Liberzon	0.271	0.586487804394038	40	16.6666666666667	11	0.1	1	0.623573196381421	0.703516699577552	1	0.69638194408607	38	1	11
5	M5932	HALLMARK_INFLAMMATORY_RESPONSE	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INFLAMMATORY_RESPONSE.html	Genes defining inflammatory response.		175/200	Arthur Liberzon	2.56397784509287e-08	3.20497230636609e-07	5	15.6666666666667	12	8.54659289002046e-09	4	0.724979825102502	-0.798585365579773	-1	22.9015712966849	4	12	31