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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit ee9b940a5ffa6c52e42a89e55c0f5bdda0a386d5
author iuc
date Mon, 28 Jan 2019 18:39:06 -0500
parents a8a083193440
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns='http://www.w3.org/1999/xhtml' xml:lang='en' lang='en'><head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8"></meta>
<title>Ensemble of Gene 
Set Enrichment Analyses (EGSEA) - Report</title>



</head>
<body><h1><div><img src="EGSEA_logo.png" width="150" style="float:left;"></img><h1 style="color:#0f284f; position:relative; top:18px; left:10px;">Gene Set Testing Report</h1></div></h1><br/>
<h2 style="color:#22519b">Analysis Parameters</h2><b>Total number of genes: </b>17343<br/>
<b>Total number of samples: </b>5<br/>
<b>Number of contrasts: </b>1<br/>
<b>Base GSEA methods: </b>camera (limma:3.34.1), globaltest (globaltest:5.32.0), ora (stats:3.4.1)<br/>
<b>P-value combine method: </b>wilkinson<br/>
<b>Sorting statistic: </b>med.rank<br/>
<b>Fold changes calculated: </b>Yes<br/>
<b>Gene IDs - Symbols mapping used: </b>Yes<br/>
<b>Organism: </b>Homo sapiens<br/>
<b>Gene set collections: </b>h Hallmark Signatures (5.2, 07 March 2017)<br/>
<b>EGSEA version: </b>1.6.0<br/>
<b>EGSEAdata version: </b>1.6.0<br/>
<h2 style="color:#22519b">Analysis Results</h2><ul style="list-style-type:square">
<il><b>IL13Ant-IL13</b>
<ul><li>h Hallmark Signatures (<a href="./ranked-gene-sets-base/ranked-h-gene-sets-IL13Ant-IL13.html">Stats Table</a>, <a href="./hm-top-gs-h/IL13Ant-IL13-allHeatmaps.html">Heatmaps</a>, <a href="./summary/IL13Ant-IL13-h-summary.html">Summary Plots</a>, <a target="_blank" href="./ranked-gene-sets-base/ranked-h-gene-sets-IL13Ant-IL13.txt">Download 
Stats</a>)</li></ul></il></ul>
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