annotate test-data/simple_test_case_v2.json @ 14:5cb6146337d8 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit ab38fa3d5ec06729c1efa86240ec57b8143b21ed
author iuc
date Wed, 12 Jun 2024 16:01:11 +0000
parents f803a68fc9e5
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f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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1 {
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2 "identifier": "",
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3 "title": "Test Case ENA upload tool",
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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8 "filename": "Test Case ENA upload tool.txt",
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19 "name": "SEEK Project ID",
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f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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640 "outputs": [
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642 "@id": "#sample/224"
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647 "@id": "#process/sample_collection/225",
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648 "name": "",
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649 "executesProtocol": {
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650 "@id": "#protocol/_25"
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651 },
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652 "parameterValues": [],
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653 "performer": "",
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654 "date": "",
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655 "inputs": [
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657 "@id": "#source/226"
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658 }
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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660 "outputs": [
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661 {
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662 "@id": "#sample/225"
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664 ]
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705 "value": "Ena stream 1"
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715 "value": "experiment_alias_"
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717 {
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718 "@id": "#assay_comment/25_48_49_14_57",
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719 "name": "ena_run_alias_prefix",
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720 "value": "run_alias_"
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721 },
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722 {
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723 "@id": "#assay_comment/48_49",
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724 "name": "linked_assays",
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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725 "value": "[{\"id\":48,\"title\":\"Assay 1 - Test case ENA upload tool\"},{\"id\":49,\"title\":\"Assay 2 - Test case ENA upload tool\"}]"
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729 "characteristicCategories": [
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730 {
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731 "@id": "#characteristic_category/title_671",
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733 "annotationValue": "title",
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735 "termSource": ""
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738 {
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739 "@id": "#characteristic_category/library_name_673",
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741 "annotationValue": "library_name",
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742 "termAccession": "",
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746 {
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747 "@id": "#characteristic_category/accession_681",
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748 "characteristicType": {
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749 "annotationValue": "accession",
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750 "termAccession": "",
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751 "termSource": ""
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754 {
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755 "@id": "#characteristic_category/submission_date_682",
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
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756 "characteristicType": {
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757 "annotationValue": "submission date",
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1518 "outputs": [
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1519 {
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1520 "@id": "#data_file/235"
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1524 "@id": "#process/library_construction/235"
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1526 "nextProcess": {}
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1529 "dataFiles": [
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1530 {
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1532 "name": "RD file 1a",
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1533 "type": "Raw Data File",
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1541 "value": "fastq"
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1544 "name": "file checksum",
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1548 "name": "accession",
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1551 {
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1552 "name": "submission date",
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1555 {
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1556 "name": "status",
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1557 "value": "add"
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1562 "@id": "#data_file/234",
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1563 "name": "RD file 1b",
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1564 "type": "Raw Data File",
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1565 "comments": [
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1566 {
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1567 "name": "file_name",
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1568 "value": "ENA_TEST2.R2.fastq.gz"
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1570 {
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1571 "name": "file_type",
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1572 "value": "fastq"
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1575 "name": "file checksum",
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1579 "name": "accession",
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1583 "name": "submission date",
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1586 {
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1587 "name": "status",
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1588 "value": "add"
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1593 "@id": "#data_file/235",
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1594 "name": "RD file 3",
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1595 "type": "Raw Data File",
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1597 {
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1599 "value": "ENA_TEST1.R1.fastq.gz"
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1603 "value": "fastq"
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diff changeset
1611 "value": ""
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1612 },
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1613 {
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1614 "name": "submission date",
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1615 "value": ""
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1616 },
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1617 {
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1618 "name": "status",
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1619 "value": "add"
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
diff changeset
1620 }
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1621 ]
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1622 }
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1623 ],
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1624 "unitCategories": []
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1625 }
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1626 ],
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1627 "factors": [],
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1628 "unitCategories": []
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1629 }
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
parents:
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1630 ]
f803a68fc9e5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit c7f54e6e3b1ffad5631ff7c150449cb79bd3686d
iuc
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1631 }