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comparison ena_upload.xml @ 14:5cb6146337d8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit ab38fa3d5ec06729c1efa86240ec57b8143b21ed
author iuc
date Wed, 12 Jun 2024 16:01:11 +0000
parents ea5e944f447d
children
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13:ea5e944f447d 14:5cb6146337d8
1 <tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT"> 1 <tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT">
2 <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description> 2 <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.7.1</token> 4 <token name="@TOOL_VERSION@">0.7.3</token>
5 <token name="@VERSION_SUFFIX@">1</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 <import>samples_macros.xml</import> 6 <import>samples_macros.xml</import>
7 </macros> 7 </macros>
8 <requirements> 8 <requirements>
9 <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement> 9 <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement>
794 <assert_command> 794 <assert_command>
795 <has_text_matching expression="ena-upload-cli"/> 795 <has_text_matching expression="ena-upload-cli"/>
796 <has_text_matching expression="--data '1.fastqsanger.gz' '2.fastqsanger.gz'"/> 796 <has_text_matching expression="--data '1.fastqsanger.gz' '2.fastqsanger.gz'"/>
797 <has_text_matching expression="--action 'modify' --center 'Some research center'"/> 797 <has_text_matching expression="--action 'modify' --center 'Some research center'"/>
798 <has_text_matching expression="--checklist ERC000033"/> 798 <has_text_matching expression="--checklist ERC000033"/>
799 <not_has_text text="add" /> 799 <not_has_text text="--action 'add'" />
800 </assert_command> 800 </assert_command>
801 </test> 801 </test>
802 <!--Test 9: isa JSON input of NON-VIRAL samples--> 802 <!--Test 9: isa JSON input of NON-VIRAL samples-->
803 <test expect_num_outputs="5"> 803 <test expect_num_outputs="5">
804 <conditional name="action_options"> 804 <conditional name="action_options">