Mercurial > repos > iuc > ena_upload
comparison ena_upload.xml @ 13:ea5e944f447d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit d87ac7944bca149b5ae3fc33d445b6c25051ab26
author | iuc |
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date | Wed, 27 Mar 2024 16:46:55 +0000 |
parents | f803a68fc9e5 |
children | 5cb6146337d8 |
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12:29648e5e83a8 | 13:ea5e944f447d |
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1 <tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT"> | 1 <tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT"> |
2 <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description> | 2 <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description> |
3 <macros> | 3 <macros> |
4 <token name="@TOOL_VERSION@">0.7.1</token> | 4 <token name="@TOOL_VERSION@">0.7.1</token> |
5 <token name="@VERSION_SUFFIX@">0</token> | 5 <token name="@VERSION_SUFFIX@">1</token> |
6 <import>samples_macros.xml</import> | 6 <import>samples_macros.xml</import> |
7 </macros> | 7 </macros> |
8 <requirements> | 8 <requirements> |
9 <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement> | 9 <requirement type="package" version="@TOOL_VERSION@">ena-upload-cli</requirement> |
10 </requirements> | 10 </requirements> |
194 --study '$studies_table_path' | 194 --study '$studies_table_path' |
195 --run '$runs_table_path' | 195 --run '$runs_table_path' |
196 --sample '$samples_table_path' | 196 --sample '$samples_table_path' |
197 #elif $action_options.input_format_conditional.input_format == "isa_json": | 197 #elif $action_options.input_format_conditional.input_format == "isa_json": |
198 --isa_json ./isa_json_input.json | 198 --isa_json ./isa_json_input.json |
199 --isa_assay_stream '$isa_assay_stream' | 199 --isa_assay_stream '$action_options.input_format_conditional.isa_assay_stream' |
200 #end if | 200 #end if |
201 #if $action_options.input_format_conditional.input_format == "build_tables": | 201 #if $action_options.input_format_conditional.input_format == "build_tables": |
202 #if $action_options.input_format_conditional.conditional_viral_metadata.viral_sample == "True": | 202 #if $action_options.input_format_conditional.conditional_viral_metadata.viral_sample == "True": |
203 --checklist ERC000033 | 203 --checklist ERC000033 |
204 #end if | 204 #end if |