Mercurial > repos > iuc > ena_upload
diff mappings.py @ 2:9e2df763086c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit 1eed23745846ce215e9bdc4a4934d6bc8f41b24e"
author | iuc |
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date | Thu, 15 Jul 2021 20:12:34 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mappings.py Thu Jul 15 20:12:34 2021 +0000 @@ -0,0 +1,29 @@ + +optional_samples_cols_mapping = { + "collection date": "collection_date", + "geographic location (latitude)": "geographic_location_latitude", + "geographic location (longitude)": "geographic_location_longitude", + "geographic location (region)": "geographic_location_region", + "sample capture status": "sample_capture_status", + "host disease outcome": "host_disease_outcome", + "host_age": "host_age", + "virus identifier": "virus_identifier", + "receipt date": "receipt_date", + "definition for seropositive sample": "definition_for_seropositive_sample", + "serotype (required for a seropositive sample)": "serotype", + "host habitat": "host_habitat", + "isolation source host-associated": "isolation_source_host_associated", + "host behaviour": "host_behaviour", + "isolation source non-host-associated": "isolation_source_non_host_associated", + "subject exposure": "subject_exposure", + "subject exposure duration": "subject_exposure_duration", + "type exposure": "type_exposure", + "personal protective equipment": "personal_protective_equipment", + "hospitalisation": "hospitalisation", + "illness duration": "illness_duration", + "illness symptoms": "illness_symptoms", + "sample storage conditions": "sample_storage_conditions", + "strain": "strain", + "host description": "host_description", + "gravidity": "gravidity" +}