Mercurial > repos > iuc > ena_webin_cli

comparison process_input.py @ 1:93fac0ae859f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
author iuc
date Mon, 06 Oct 2025 12:13:19 +0000
parents c9f87770ba8f
children
comparison
equal deleted inserted replaced
0:c9f87770ba8f 1:93fac0ae859f
111 output_handle.write("ASSEMBLYNAME\tconsensus_" + sample_alias + "\n") 111 output_handle.write("ASSEMBLYNAME\tconsensus_" + sample_alias + "\n")
112 output_handle.write("PLATFORM\t" + platform + "\n") 112 output_handle.write("PLATFORM\t" + platform + "\n")
113 output_handle.write("STUDY\t" + study_accession + "\n") 113 output_handle.write("STUDY\t" + study_accession + "\n")
114 output_handle.write("SAMPLE\t" + sample_accession + "\n") 114 output_handle.write("SAMPLE\t" + sample_accession + "\n")
115 output_handle.write("FASTA\t" + sample_alias + '.fasta.gz' + "\n") 115 output_handle.write("FASTA\t" + sample_alias + '.fasta.gz' + "\n")
116 agp_path = os.path.join("./fasta", sample_alias + ".agp")
117 if os.path.exists(agp_path):
118 output_handle.write("AGP\t" + sample_alias + ".agp\n")
119 chr_list_path = os.path.join("./fasta", sample_alias + ".tsv.gz")
120 if os.path.exists(chr_list_path):
121 output_handle.write("CHROMOSOME_LIST\t" + sample_alias + ".tsv.gz\n")
116 122
117 found_metadata = True 123 found_metadata = True
118 written_manifests_out.write(manifest_path + '\n') 124 written_manifests_out.write(manifest_path + '\n')
119 break 125 break
120 126