Mercurial > repos > iuc > enasearch_retrieve_data
diff enasearch_retrieve_data.xml @ 0:cbc24be56f7b draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
author | iuc |
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date | Tue, 29 Aug 2017 04:13:09 -0400 |
parents | |
children | 0719cfc3ebcb |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/enasearch_retrieve_data.xml Tue Aug 29 04:13:09 2017 -0400 @@ -0,0 +1,72 @@ +<tool id="enasearch_retrieve_data" name="Retrieve ENA data" version="@WRAPPER_VERSION@.0"> + <description>(other than taxon and project)</description> + <macros> + <import>macros.xml</import> + <import>search_macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="version"/> + <command detect_errors="aggressive"><![CDATA[ +enasearch + retrieve_data + @IDS@ + @DISPLAY@ + $expanded + $header + --file '$output' + --download 'txt' + ]]></command> + <inputs> + <param argument="--ids" type="text" multiple="true" label="Ids for records to return" help="Other than Taxon and Project. It can also be range of ids (e.g. ERA000010-ERA000020)"/> + <expand macro="display_opt"/> + <expand macro="expanded"/> + <expand macro="header"/> + </inputs> + <outputs> + <data name="output" format="tabular" label="${tool.name} on ${ids}"> + <expand macro="change_format"/> + </data> + </outputs> + <tests> + <test> + <param name="ids" value="ERA000010-ERA000020"/> + <conditional name="display_opt"> + <param name="display" value="xml"/> + </conditional> + <output name="output" ftype="xml" md5="d42dec30c41578705ba9b167dc0c30b1"/> + </test> + <test> + <param name="ids" value="A00145"/> + <conditional name="display_opt"> + <param name="display" value="fasta"/> + <param name="range_start" value="3"/> + <param name="range_stop" value="63"/> + </conditional> + <output name="output" ftype="fasta" md5="758cb77161dcf6f8cf841cb141e9277e"/> + </test> + <test> + <param name="ids" value="AL513382"/> + <conditional name="display_opt"> + <param name="display" value="text"/> + <param name="offset" value="0"/> + <param name="length" value="100"/> + </conditional> + <param name="expanded" value="true"/> + <output name="output" md5="e77ed0fb6f75093251b6ddc98f9db835"/> + </test> + <test> + <param name="ids" value="PRJEB2772,AL513382"/> + <conditional name="display_opt"> + <param name="display" value="html"/> + </conditional> + <param name="header" value="true"/> + <output name="output" md5="7b23a8c12893728272f4993073e341f6"/> + </test> + </tests> + <help><![CDATA[ +**What it does** + +This tool retrieve ENA data (other than taxon and project) + ]]></help> + <expand macro="citations"/> +</tool>